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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5T0G | 8334 | 2023-07-26 | 2016-08-16 | 4.4 | 4.09 | — | 4.4 | 0.005 | 0.93 | 1.0 | 0.05 | 11.72 | 0.00 | 1.763 | 18.04 | 0.10 | 7.5 | 91.7 | 0.8 | -3.88 | 0.68 | 0.56 | — | 3.9 | 0.004 | 0.92 | 0.0 | 0.05 | 13.49 | 0.01 | 2.038 | 26.68 | 0.04 | 6.9 | 92.7 | 0.4 | -1.95 | 1.32 | 0.70 | 0.67 | — | 77800 | 9924 | 39 | 0 | 7 | 0 | 0 | logfile |
✔ | 7NWT | 12635 | 2023-07-26 | 2021-03-17 | 2.66 | 2.63 | — | 2.6 | 0.011 | 0.84 | 0.0 | 0.05 | 14.14 | 0.02 | 1.145 | 4.87 | 2.95 | 2.6 | 97.4 | 0.0 | -2.35 | 0.85 | 0.88 | 4.38 | 2.7 | 0.002 | 0.65 | 0.0 | 0.04 | 15.17 | 0.01 | 1.149 | 8.11 | 2.80 | 3.2 | 96.8 | 0.0 | 0.13 | 0.28 | 0.87 | 0.88 | 3.51 | 149932 | 6355 | 74 | 4641 | 439 | 2 | 0 | logfile |
✔ | 6GSi | 0056 | 2023-07-26 | 2018-06-14 | 3.75 | 4.09 | — | 4.0 | 0.011 | 0.92 | 0.0 | 0.06 | 9.92 | 0.01 | 1.076 | 9.23 | 0.71 | 15.3 | 84.5 | 0.2 | -5.00 | 0.55 | 0.81 | 2.93 | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 13.38 | 0.00 | 1.857 | 12.45 | 0.26 | 9.9 | 90.0 | 0.1 | -2.57 | 0.96 | 0.57 | 0.84 | 2.77 | 150378 | 9831 | 48 | 0 | 12 | 0 | 74247 | logfile |
✔ | 6WDB | 21630 | 2023-07-26 | 2020-03-31 | 4.0 | 4.30 | 5.11 | 4.1 | 0.006 | 0.99 | 0.0 | 0.08 | 13.33 | 0.01 | 2.211 | 11.44 | 0.77 | 11.9 | 86.2 | 1.9 | -4.97 | 0.78 | 0.72 | — | 4.1 | 0.005 | 0.80 | 0.0 | 0.04 | 17.32 | 0.01 | 1.991 | 33.89 | 1.16 | 12.4 | 87.4 | 0.2 | -3.23 | 0.91 | 0.81 | 0.77 | — | 150149 | 6024 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 8AGU | 15424 | 2023-07-25 | 2022-07-20 | 2.7 | 3.26 | 2.76 | 2.7 | 0.006 | 0.90 | 6.0 | 0.05 | 15.12 | 0.01 | 1.041 | 6.23 | 1.81 | 3.6 | 96.3 | 0.1 | 0.14 | 0.92 | 0.88 | 3.27 | 2.7 | 0.006 | 0.68 | 0.0 | 0.04 | 15.52 | 0.00 | 1.881 | 9.66 | 2.38 | 4.5 | 95.4 | 0.0 | 0.42 | 1.17 | 0.93 | 0.92 | 3.26 | 149748 | 9427 | 68 | 3568 | 38 | 0 | 0 | logfile |
✔ | 5MDY | 3492 | 2023-07-25 | 2016-11-13 | 3.35 | 3.40 | 3.43 | 3.4 | 0.009 | 1.39 | 22.0 | 0.11 | 17.07 | 0.02 | 1.409 | 4.38 | 9.85 | 6.0 | 93.5 | 0.5 | -2.09 | 0.78 | 0.85 | 2.23 | 3.4 | 0.006 | 0.77 | 0.0 | 0.04 | 15.91 | 0.01 | 1.804 | 9.44 | 0.75 | 5.6 | 94.4 | 0.1 | -0.59 | 0.60 | 0.78 | 0.85 | 2.05 | 149460 | 6323 | 68 | 4638 | 452 | 3 | 0 | logfile |
✔ | 7UNR | 26630 | 2023-07-25 | 2022-04-11 | 2.9 | 3.18 | 2.93 | 3.1 | 0.005 | 0.64 | 2.0 | 0.04 | 14.92 | 0.02 | 1.879 | 6.56 | 0.26 | 7.2 | 92.4 | 0.4 | -1.63 | 0.79 | 0.88 | 3.11 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 15.66 | 0.01 | 1.834 | 7.03 | 2.87 | 6.9 | 92.8 | 0.4 | -0.99 | 0.89 | 0.79 | 0.89 | 2.76 | 149327 | 6502 | 82 | 4606 | 632 | 200 | 0 | logfile |
✔ | 5MDV | 3489 | 2023-07-25 | 2016-11-13 | 2.97 | 3.05 | 2.97 | 3.0 | 0.008 | 1.26 | 22.0 | 0.10 | 16.59 | 0.02 | 1.257 | 3.21 | 7.74 | 4.9 | 94.7 | 0.4 | -1.77 | 0.79 | 0.88 | 3.19 | 3.0 | 0.005 | 0.67 | 0.0 | 0.04 | 15.80 | 0.01 | 1.819 | 7.90 | 3.99 | 3.6 | 96.4 | 0.0 | 0.19 | 0.46 | 0.81 | 0.89 | 2.98 | 149892 | 6382 | 67 | 4638 | 442 | 2 | 0 | logfile |
✔ | 5MDW | 3490 | 2023-07-25 | 2016-11-13 | 3.06 | 3.16 | 3.07 | 3.1 | 0.009 | 1.33 | 26.0 | 0.11 | 16.56 | 0.02 | 1.464 | 3.52 | 7.69 | 5.6 | 93.9 | 0.5 | -1.97 | 0.81 | 0.89 | 2.64 | 3.1 | 0.007 | 0.72 | 0.0 | 0.04 | 15.66 | 0.01 | 1.807 | 7.90 | 0.46 | 3.9 | 96.0 | 0.0 | -0.15 | 1.16 | 0.83 | 0.89 | 2.69 | 149607 | 6346 | 67 | 4638 | 440 | 2 | 0 | logfile |
✔ | 7UNU | 26633 | 2023-07-25 | 2022-04-11 | 2.9 | 3.16 | 2.89 | 3.1 | 0.007 | 0.70 | 0.0 | 0.04 | 14.92 | 0.02 | 1.895 | 6.14 | 0.20 | 8.0 | 91.6 | 0.4 | -1.70 | 0.81 | 0.89 | 3.42 | 3.1 | 0.002 | 0.67 | 0.0 | 0.04 | 15.85 | 0.01 | 1.936 | 7.18 | 3.16 | 6.7 | 92.9 | 0.4 | -1.00 | 2.56 | 0.79 | 0.89 | 2.72 | 149259 | 6488 | 86 | 4606 | 609 | 201 | 0 | logfile |
✔ | 7SS9 | 25405 | 2023-07-25 | 2021-11-10 | 3.9 | 4.09 | 4.66 | 4.0 | 0.010 | 1.07 | 0.0 | 0.09 | 16.35 | 0.01 | 2.130 | 12.90 | 1.63 | 11.7 | 87.8 | 0.5 | -4.79 | 0.76 | 0.73 | 0.63 | 4.0 | 0.005 | 0.78 | 0.0 | 0.04 | 17.95 | 0.01 | 1.998 | 25.79 | 1.49 | 12.4 | 87.4 | 0.2 | -2.96 | 0.68 | 0.77 | 0.72 | 0.56 | 149808 | 6171 | 57 | 4736 | 0 | 0 | 0 | logfile |
✔ | 5L3P | 4001 | 2023-07-25 | 2016-05-24 | 3.7 | 4.66 | — | 16.0 | 0.006 | 0.60 | 0.0 | 0.19 | 12.34 | 0.02 | 2.115 | 7.18 | 0.00 | 8.2 | 89.4 | 2.4 | -1.95 | 0.44 | 0.11 | 0.16 | 3.9 | 0.007 | 1.28 | 4.0 | 0.06 | 18.96 | 0.01 | 1.742 | 61.81 | 1.02 | 12.1 | 87.1 | 0.8 | -2.95 | 2.41 | 0.68 | 0.46 | -0.03 | 149606 | 6419 | 58 | 4704 | 76 | 0 | 0 | logfile |
✔ | 7MT7 | 23976 | 2023-07-25 | 2021-05-13 | 2.71 | 2.43 | — | 2.8 | 0.007 | 0.86 | 0.0 | 0.05 | 14.11 | 0.01 | 2.026 | 2.68 | 0.17 | 6.3 | 93.6 | 0.1 | -4.19 | 0.87 | 0.87 | 3.93 | 2.8 | 0.004 | 0.60 | 0.0 | 0.04 | 14.38 | 0.01 | 1.864 | 6.26 | 1.79 | 5.6 | 94.3 | 0.1 | -0.68 | 0.44 | 0.85 | 0.88 | 3.08 | 149696 | 5629 | 71 | 4912 | 449 | 0 | 0 | logfile |
✔ | 6WDi | 21637 | 2023-07-25 | 2020-03-31 | 4.0 | 4.30 | 4.79 | 4.1 | 0.006 | 0.98 | 0.0 | 0.08 | 13.16 | 0.01 | 2.280 | 9.88 | 0.49 | 12.5 | 85.9 | 1.6 | -4.84 | 0.77 | 0.71 | — | 4.1 | 0.005 | 0.81 | 0.0 | 0.04 | 17.46 | 0.01 | 1.877 | 32.96 | 0.87 | 12.8 | 87.1 | 0.1 | -3.23 | 1.61 | 0.81 | 0.75 | — | 149628 | 5954 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 5U4i | 8505 | 2023-07-25 | 2016-12-04 | 3.5 | 3.09 | 3.83 | 3.7 | 0.007 | 1.17 | 41.0 | 0.10 | 18.54 | 0.02 | 1.386 | 8.56 | 8.19 | 6.4 | 92.7 | 0.8 | -1.32 | 0.60 | 0.74 | 0.22 | 3.0 | 0.005 | 0.80 | 0.0 | 0.04 | 18.66 | 0.01 | 1.670 | 32.60 | 1.29 | 7.3 | 92.6 | 0.1 | -1.91 | 1.50 | 0.63 | 0.74 | 0.31 | 149495 | 6159 | 61 | 4715 | 125 | 0 | 0 | logfile |
✔ | 7UNV | 26634 | 2023-07-25 | 2022-04-11 | 2.7 | 3.21 | 2.68 | 3.0 | 0.005 | 0.62 | 0.0 | 0.04 | 15.01 | 0.02 | 1.751 | 6.95 | 0.16 | 6.6 | 93.0 | 0.4 | -1.44 | 0.90 | 0.89 | 3.23 | 3.0 | 0.004 | 0.71 | 0.0 | 0.04 | 15.77 | 0.01 | 1.764 | 8.46 | 2.74 | 7.0 | 92.7 | 0.3 | -0.81 | 0.37 | 0.88 | 0.93 | 2.85 | 149599 | 6534 | 85 | 4605 | 598 | 295 | 0 | logfile |
✔ | 8AGX | 15427 | 2023-07-25 | 2022-07-20 | 2.4 | 3.19 | 2.52 | 2.5 | 0.006 | 0.93 | 5.0 | 0.05 | 15.25 | 0.01 | 1.296 | 4.14 | 2.04 | 3.7 | 96.2 | 0.1 | -0.44 | 0.92 | 0.89 | 3.34 | 2.6 | 0.005 | 0.64 | 0.0 | 0.04 | 15.42 | 0.00 | 1.909 | 8.59 | 1.84 | 4.5 | 95.4 | 0.0 | 0.51 | 0.47 | 0.94 | 0.93 | 3.35 | 149706 | 9204 | 68 | 3640 | 41 | 0 | 0 | logfile |
✔ | 5KCS | 8238 | 2023-07-24 | 2016-06-06 | 3.9 | 4.07 | — | 4.0 | 0.006 | 0.51 | 0.0 | 0.04 | 12.43 | 0.02 | 1.981 | 9.49 | 0.19 | 8.8 | 88.6 | 2.6 | -3.12 | 0.61 | 0.61 | 0.64 | 4.0 | 0.004 | 0.76 | 0.0 | 0.04 | 15.46 | 0.01 | 1.967 | 16.63 | 1.04 | 9.0 | 90.4 | 0.7 | -1.78 | 1.92 | 0.71 | 0.80 | 0.83 | 148945 | 6656 | 59 | 4641 | 1 | 0 | 0 | logfile |
✔ | 7D6Z | 30598 | 2023-07-24 | 2020-10-02 | 3.4 | 3.68 | — | 3.5 | 0.007 | 0.77 | 0.0 | 0.04 | 14.81 | 0.01 | 1.815 | 3.87 | 0.39 | 10.0 | 89.6 | 0.4 | -5.33 | 0.89 | 0.91 | 2.53 | 3.5 | 0.009 | 0.75 | 0.0 | 0.04 | 15.24 | 0.01 | 2.017 | 10.50 | 0.96 | 11.8 | 87.9 | 0.3 | -2.62 | 0.39 | 0.89 | 0.92 | 2.07 | 148863 | 5970 | 58 | 4761 | 0 | 0 | 0 | logfile |
✔ | 6LB0 | 0866 | 2023-07-24 | 2019-11-13 | 3.6 | 3.79 | — | 3.7 | 0.006 | 0.86 | 0.0 | 0.05 | 13.62 | 0.01 | 0.919 | 7.46 | 0.00 | 6.5 | 93.5 | 0.0 | -3.90 | 0.74 | 0.89 | 4.20 | 3.7 | 0.002 | 0.61 | 0.0 | 0.04 | 14.24 | 0.00 | 2.237 | 7.40 | 0.39 | 4.7 | 95.3 | 0.0 | -2.02 | 0.52 | 0.74 | 0.89 | 3.68 | 148140 | 19440 | 60 | 0 | 0 | 0 | 0 | logfile |