Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5T0G	8334	2023-07-26	2016-08-16	4.4	4.09	—	4.4	0.005	0.93	1.0	0.05	11.72	0.00	1.763	18.04	0.10	7.5	91.7	0.8	-3.88	0.68	0.56	—	3.9	0.004	0.92	0.0	0.05	13.49	0.01	2.038	26.68	0.04	6.9	92.7	0.4	-1.95	1.32	0.70	0.67	—	77800	9924	39	0	7	0	0	logfile
✔	7NWT	12635	2023-07-26	2021-03-17	2.66	2.63	—	2.6	0.011	0.84	0.0	0.05	14.14	0.02	1.145	4.87	2.95	2.6	97.4	0.0	-2.35	0.85	0.88	4.38	2.7	0.002	0.65	0.0	0.04	15.17	0.01	1.149	8.11	2.80	3.2	96.8	0.0	0.13	0.28	0.87	0.88	3.51	149932	6355	74	4641	439	2	0	logfile
✔	6GSi	0056	2023-07-26	2018-06-14	3.75	4.09	—	4.0	0.011	0.92	0.0	0.06	9.92	0.01	1.076	9.23	0.71	15.3	84.5	0.2	-5.00	0.55	0.81	2.93	4.0	0.003	0.65	0.0	0.04	13.38	0.00	1.857	12.45	0.26	9.9	90.0	0.1	-2.57	0.96	0.57	0.84	2.77	150378	9831	48	0	12	0	74247	logfile
✔	6WDB	21630	2023-07-26	2020-03-31	4.0	4.30	5.11	4.1	0.006	0.99	0.0	0.08	13.33	0.01	2.211	11.44	0.77	11.9	86.2	1.9	-4.97	0.78	0.72	—	4.1	0.005	0.80	0.0	0.04	17.32	0.01	1.991	33.89	1.16	12.4	87.4	0.2	-3.23	0.91	0.81	0.77	—	150149	6024	59	4807	0	0	0	logfile
✔	8AGU	15424	2023-07-25	2022-07-20	2.7	3.26	2.76	2.7	0.006	0.90	6.0	0.05	15.12	0.01	1.041	6.23	1.81	3.6	96.3	0.1	0.14	0.92	0.88	3.27	2.7	0.006	0.68	0.0	0.04	15.52	0.00	1.881	9.66	2.38	4.5	95.4	0.0	0.42	1.17	0.93	0.92	3.26	149748	9427	68	3568	38	0	0	logfile
✔	5MDY	3492	2023-07-25	2016-11-13	3.35	3.40	3.43	3.4	0.009	1.39	22.0	0.11	17.07	0.02	1.409	4.38	9.85	6.0	93.5	0.5	-2.09	0.78	0.85	2.23	3.4	0.006	0.77	0.0	0.04	15.91	0.01	1.804	9.44	0.75	5.6	94.4	0.1	-0.59	0.60	0.78	0.85	2.05	149460	6323	68	4638	452	3	0	logfile
✔	7UNR	26630	2023-07-25	2022-04-11	2.9	3.18	2.93	3.1	0.005	0.64	2.0	0.04	14.92	0.02	1.879	6.56	0.26	7.2	92.4	0.4	-1.63	0.79	0.88	3.11	3.1	0.003	0.63	0.0	0.04	15.66	0.01	1.834	7.03	2.87	6.9	92.8	0.4	-0.99	0.89	0.79	0.89	2.76	149327	6502	82	4606	632	200	0	logfile
✔	5MDV	3489	2023-07-25	2016-11-13	2.97	3.05	2.97	3.0	0.008	1.26	22.0	0.10	16.59	0.02	1.257	3.21	7.74	4.9	94.7	0.4	-1.77	0.79	0.88	3.19	3.0	0.005	0.67	0.0	0.04	15.80	0.01	1.819	7.90	3.99	3.6	96.4	0.0	0.19	0.46	0.81	0.89	2.98	149892	6382	67	4638	442	2	0	logfile
✔	5MDW	3490	2023-07-25	2016-11-13	3.06	3.16	3.07	3.1	0.009	1.33	26.0	0.11	16.56	0.02	1.464	3.52	7.69	5.6	93.9	0.5	-1.97	0.81	0.89	2.64	3.1	0.007	0.72	0.0	0.04	15.66	0.01	1.807	7.90	0.46	3.9	96.0	0.0	-0.15	1.16	0.83	0.89	2.69	149607	6346	67	4638	440	2	0	logfile
✔	7UNU	26633	2023-07-25	2022-04-11	2.9	3.16	2.89	3.1	0.007	0.70	0.0	0.04	14.92	0.02	1.895	6.14	0.20	8.0	91.6	0.4	-1.70	0.81	0.89	3.42	3.1	0.002	0.67	0.0	0.04	15.85	0.01	1.936	7.18	3.16	6.7	92.9	0.4	-1.00	2.56	0.79	0.89	2.72	149259	6488	86	4606	609	201	0	logfile
✔	7SS9	25405	2023-07-25	2021-11-10	3.9	4.09	4.66	4.0	0.010	1.07	0.0	0.09	16.35	0.01	2.130	12.90	1.63	11.7	87.8	0.5	-4.79	0.76	0.73	0.63	4.0	0.005	0.78	0.0	0.04	17.95	0.01	1.998	25.79	1.49	12.4	87.4	0.2	-2.96	0.68	0.77	0.72	0.56	149808	6171	57	4736	0	0	0	logfile
✔	5L3P	4001	2023-07-25	2016-05-24	3.7	4.66	—	16.0	0.006	0.60	0.0	0.19	12.34	0.02	2.115	7.18	0.00	8.2	89.4	2.4	-1.95	0.44	0.11	0.16	3.9	0.007	1.28	4.0	0.06	18.96	0.01	1.742	61.81	1.02	12.1	87.1	0.8	-2.95	2.41	0.68	0.46	-0.03	149606	6419	58	4704	76	0	0	logfile
✔	7MT7	23976	2023-07-25	2021-05-13	2.71	2.43	—	2.8	0.007	0.86	0.0	0.05	14.11	0.01	2.026	2.68	0.17	6.3	93.6	0.1	-4.19	0.87	0.87	3.93	2.8	0.004	0.60	0.0	0.04	14.38	0.01	1.864	6.26	1.79	5.6	94.3	0.1	-0.68	0.44	0.85	0.88	3.08	149696	5629	71	4912	449	0	0	logfile
✔	6WDi	21637	2023-07-25	2020-03-31	4.0	4.30	4.79	4.1	0.006	0.98	0.0	0.08	13.16	0.01	2.280	9.88	0.49	12.5	85.9	1.6	-4.84	0.77	0.71	—	4.1	0.005	0.81	0.0	0.04	17.46	0.01	1.877	32.96	0.87	12.8	87.1	0.1	-3.23	1.61	0.81	0.75	—	149628	5954	59	4807	0	0	0	logfile
✔	5U4i	8505	2023-07-25	2016-12-04	3.5	3.09	3.83	3.7	0.007	1.17	41.0	0.10	18.54	0.02	1.386	8.56	8.19	6.4	92.7	0.8	-1.32	0.60	0.74	0.22	3.0	0.005	0.80	0.0	0.04	18.66	0.01	1.670	32.60	1.29	7.3	92.6	0.1	-1.91	1.50	0.63	0.74	0.31	149495	6159	61	4715	125	0	0	logfile
✔	7UNV	26634	2023-07-25	2022-04-11	2.7	3.21	2.68	3.0	0.005	0.62	0.0	0.04	15.01	0.02	1.751	6.95	0.16	6.6	93.0	0.4	-1.44	0.90	0.89	3.23	3.0	0.004	0.71	0.0	0.04	15.77	0.01	1.764	8.46	2.74	7.0	92.7	0.3	-0.81	0.37	0.88	0.93	2.85	149599	6534	85	4605	598	295	0	logfile
✔	8AGX	15427	2023-07-25	2022-07-20	2.4	3.19	2.52	2.5	0.006	0.93	5.0	0.05	15.25	0.01	1.296	4.14	2.04	3.7	96.2	0.1	-0.44	0.92	0.89	3.34	2.6	0.005	0.64	0.0	0.04	15.42	0.00	1.909	8.59	1.84	4.5	95.4	0.0	0.51	0.47	0.94	0.93	3.35	149706	9204	68	3640	41	0	0	logfile
✔	5KCS	8238	2023-07-24	2016-06-06	3.9	4.07	—	4.0	0.006	0.51	0.0	0.04	12.43	0.02	1.981	9.49	0.19	8.8	88.6	2.6	-3.12	0.61	0.61	0.64	4.0	0.004	0.76	0.0	0.04	15.46	0.01	1.967	16.63	1.04	9.0	90.4	0.7	-1.78	1.92	0.71	0.80	0.83	148945	6656	59	4641	1	0	0	logfile
✔	7D6Z	30598	2023-07-24	2020-10-02	3.4	3.68	—	3.5	0.007	0.77	0.0	0.04	14.81	0.01	1.815	3.87	0.39	10.0	89.6	0.4	-5.33	0.89	0.91	2.53	3.5	0.009	0.75	0.0	0.04	15.24	0.01	2.017	10.50	0.96	11.8	87.9	0.3	-2.62	0.39	0.89	0.92	2.07	148863	5970	58	4761	0	0	0	logfile
✔	6LB0	0866	2023-07-24	2019-11-13	3.6	3.79	—	3.7	0.006	0.86	0.0	0.05	13.62	0.01	0.919	7.46	0.00	6.5	93.5	0.0	-3.90	0.74	0.89	4.20	3.7	0.002	0.61	0.0	0.04	14.24	0.00	2.237	7.40	0.39	4.7	95.3	0.0	-2.02	0.52	0.74	0.89	3.68	148140	19440	60	0	0	0	0	logfile

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