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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6FTJ | 4317 | 2024-03-28 | 2018-02-22 | 4.7 | 4.88 | — | 4.7 | 0.011 | 1.39 | 18.0 | 0.10 | 25.54 | 0.01 | 0.475 | 12.11 | 11.77 | 9.8 | 87.8 | 2.4 | -4.05 | 0.63 | 0.62 | — | 4.7 | 0.007 | 1.00 | 0.0 | 0.05 | 24.64 | 0.01 | 0.951 | 43.92 | 0.04 | 11.6 | 87.9 | 0.5 | -2.52 | 1.18 | 0.67 | 0.71 | — | 152111 | 8263 | 74 | 3938 | 461 | 0 | 0 | logfile |
✔ | 7PJW | 13462 | 2024-03-28 | 2021-08-24 | 4.0 | 4.18 | 3.62 | 4.0 | 0.007 | 0.94 | 3.0 | 0.05 | 24.06 | 0.02 | 1.344 | 23.05 | 0.46 | 13.5 | 86.3 | 0.2 | -4.51 | 0.71 | 0.76 | — | 4.0 | 0.005 | 0.76 | 1.0 | 0.04 | 23.76 | 0.01 | 1.917 | 20.32 | 4.78 | 9.9 | 90.1 | 0.0 | -2.04 | 1.78 | 0.73 | 0.79 | — | 152719 | 6657 | 61 | 4728 | 2 | 0 | 0 | logfile |
✘ | 5MMM | 3533 | 2024-03-28 | 2016-12-11 | 3.4 | 3.54 | — | 3.4 | 0.008 | 1.13 | 0.0 | 0.05 | 23.72 | 0.01 | 1.757 | 9.01 | 9.93 | 4.9 | 94.8 | 0.3 | -3.33 | 0.90 | 0.86 | 1.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 152465 | 6586 | 86 | 4585 | 955 | 0 | 0 | logfile |
✘ | 8iDY | 35371 | 2024-03-28 | 2023-02-14 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155910 | 8949 | 56 | 3918 | 2 | 0 | 0 | logfile |
✔ | 7MSZ | 23972 | 2024-03-28 | 2021-05-12 | 3.1 | 2.44 | — | 2.9 | 0.013 | 1.14 | 1.0 | 0.06 | 22.78 | 0.01 | 1.949 | 3.55 | 0.54 | 9.3 | 90.6 | 0.1 | -4.96 | 0.83 | 0.84 | 3.69 | 2.9 | 0.008 | 0.78 | 0.0 | 0.04 | 22.66 | 0.01 | 1.764 | 8.48 | 4.69 | 8.4 | 91.5 | 0.1 | -2.28 | 0.46 | 0.83 | 0.85 | 2.69 | 152345 | 6171 | 72 | 4836 | 427 | 0 | 0 | logfile |
✘ | 5KPW | 8281 | 2024-03-28 | 2016-07-05 | 3.9 | 5.27 | 4.08 | 3.8 | 0.007 | 1.11 | 5.0 | 0.09 | 22.51 | 0.01 | 2.191 | 24.08 | 0.79 | 12.9 | 81.4 | 5.7 | -4.53 | 0.90 | 0.77 | 0.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 154603 | 6623 | 59 | 4812 | 0 | 0 | 0 | logfile |
✘ | 7PiN | 13444 | 2024-03-28 | 2021-08-22 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 152240 | 14846 | 170 | 0 | 721 | 0 | 0 | logfile |
✘ | 7RMC | 24560 | 2024-03-28 | 2021-07-27 | 3.5 | 3.50 | — | 3.6 | 0.013 | 2.05 | 44.0 | 0.15 | 17.28 | 0.02 | 2.304 | 1.80 | 1.65 | 4.6 | 95.1 | 0.4 | -1.78 | 0.26 | 0.38 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106824 | 6732 | 24 | 0 | 24 | 0 | 53244 | logfile |
✘ | 8iNK | 35599 | 2024-03-28 | 2023-03-10 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 152807 | 8896 | 54 | 3766 | 2 | 0 | 0 | logfile |
✔ | 7ACR | 11718 | 2024-03-27 | 2020-09-11 | 3.44 | 3.72 | 3.11 | 2.6 | 0.003 | 0.65 | 21.0 | 0.04 | 23.55 | 0.02 | 0.444 | 14.05 | 1.77 | 5.3 | 94.3 | 0.4 | -1.02 | 0.87 | 0.78 | 1.12 | 2.5 | 0.004 | 0.70 | 0.0 | 0.04 | 23.96 | 0.01 | 1.051 | 19.40 | 4.59 | 7.8 | 92.1 | 0.1 | -1.60 | 1.63 | 0.89 | 0.84 | 1.23 | 151668 | 5858 | 66 | 4920 | 214 | 0 | 0 | logfile |
✔ | 7UA3 | 26413 | 2024-03-27 | 2022-03-11 | 2.97 | 3.02 | — | 1.7 | 0.003 | 0.69 | 0.0 | 0.04 | 14.13 | 0.01 | 1.967 | 9.63 | 0.52 | 3.9 | 95.9 | 0.2 | 1.12 | 0.85 | 0.80 | 3.29 | 1.8 | 0.005 | 0.65 | 1.0 | 0.04 | 15.04 | 0.00 | 1.628 | 11.05 | 0.56 | 3.7 | 96.1 | 0.2 | 1.37 | 0.35 | 0.87 | 0.84 | 3.27 | 150252 | 18768 | 16 | 0 | 12 | 0 | 0 | logfile |
✔ | 6GXN | 0081 | 2024-03-27 | 2018-06-27 | 3.9 | 4.79 | — | 4.3 | 0.003 | 0.80 | 4.0 | 0.04 | 22.41 | 0.01 | 1.098 | 6.08 | 0.17 | 8.1 | 91.4 | 0.5 | -4.05 | 0.86 | 0.83 | 0.48 | 4.3 | 0.007 | 0.79 | 2.0 | 0.04 | 23.58 | 0.01 | 1.518 | 32.86 | 7.73 | 10.7 | 89.0 | 0.3 | -1.99 | 1.82 | 0.88 | 0.88 | 0.70 | 151860 | 6741 | 59 | 4638 | 1 | 0 | 0 | logfile |
✔ | 6GXM | 0080 | 2024-03-27 | 2018-06-27 | 3.8 | 4.73 | — | 4.3 | 0.004 | 0.81 | 0.0 | 0.04 | 22.40 | 0.01 | 1.322 | 6.07 | 0.20 | 8.4 | 91.2 | 0.4 | -4.08 | 0.85 | 0.83 | 0.31 | 4.3 | 0.005 | 0.73 | 0.0 | 0.04 | 23.42 | 0.01 | 2.033 | 27.01 | 5.68 | 10.3 | 89.4 | 0.2 | -1.79 | 1.78 | 0.87 | 0.87 | 0.41 | 151394 | 6643 | 59 | 4639 | 1 | 0 | 0 | logfile |
✘ | 7PiW | 13455 | 2024-03-27 | 2021-08-23 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 151508 | 14859 | 161 | 0 | 703 | 0 | 0 | logfile |
✔ | 6YL3 | 10835 | 2024-03-27 | 2020-04-06 | 1.98 | 2.04 | 1.99 | 2.0 | 0.067 | 3.60 | 246.0 | 0.36 | 16.31 | 0.02 | 1.877 | 4.50 | 2.74 | 5.3 | 94.4 | 0.4 | -2.46 | 0.78 | 0.83 | 6.40 | 2.0 | 0.004 | 0.74 | 0.0 | 0.05 | 16.13 | 0.01 | 1.767 | 5.13 | 1.70 | 3.8 | 96.0 | 0.1 | -0.04 | 0.82 | 0.81 | 0.86 | 6.97 | 150156 | 9552 | 84 | 0 | 24 | 3672 | 73044 | logfile |
✔ | 7ACJ | 11717 | 2024-03-27 | 2020-09-11 | 3.2 | 3.44 | 3.22 | 3.1 | 0.003 | 0.61 | 19.0 | 0.03 | 23.55 | 0.02 | 0.852 | 13.29 | 0.61 | 5.1 | 94.7 | 0.2 | -0.99 | 0.85 | 0.81 | 1.87 | 3.1 | 0.004 | 0.70 | 3.0 | 0.04 | 23.84 | 0.01 | 1.044 | 15.30 | 4.30 | 7.3 | 92.6 | 0.1 | -1.20 | 0.61 | 0.88 | 0.87 | 2.04 | 151803 | 5864 | 64 | 4920 | 310 | 0 | 0 | logfile |
✔ | 6C4i | 7341 | 2024-03-27 | 2018-01-12 | 3.24 | 3.32 | 3.41 | 3.4 | 0.007 | 1.19 | 44.0 | 0.10 | 23.94 | 0.02 | 1.796 | 5.21 | 9.75 | 4.2 | 95.4 | 0.4 | -0.69 | 0.55 | 0.81 | 1.76 | 3.3 | 0.004 | 0.64 | 1.0 | 0.04 | 23.36 | 0.01 | 1.885 | 11.33 | 5.02 | 4.0 | 96.0 | 0.1 | -0.07 | 0.60 | 0.61 | 0.84 | 1.94 | 151446 | 6381 | 72 | 4717 | 319 | 2 | 0 | logfile |
✔ | 6BU8 | 7289 | 2024-03-27 | 2017-12-08 | 3.5 | 4.67 | — | 3.7 | 0.006 | 0.91 | 0.0 | 0.08 | 21.95 | 0.01 | 2.239 | 17.31 | 0.70 | 14.8 | 81.8 | 3.4 | -5.26 | 0.91 | 0.87 | 0.88 | 3.7 | 0.003 | 0.66 | 0.0 | 0.03 | 23.43 | 0.00 | 1.956 | 21.91 | 4.30 | 9.2 | 90.5 | 0.3 | -1.78 | 1.42 | 0.91 | 0.88 | 0.72 | 152151 | 6272 | 61 | 4810 | 0 | 0 | 0 | logfile |
✔ | 5WYK | 6696 | 2024-03-27 | 2017-01-13 | 4.5 | 4.62 | — | 4.5 | 0.005 | 1.07 | 0.0 | 0.05 | 17.92 | 0.01 | 1.079 | 8.26 | 0.28 | 8.5 | 91.2 | 0.3 | -4.11 | 0.53 | 0.55 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.04 | 18.27 | 0.00 | 2.026 | 14.45 | 0.05 | 8.2 | 91.7 | 0.1 | -1.86 | 0.95 | 0.61 | 0.68 | — | 150760 | 11513 | 58 | 1619 | 5034 | 0 | 0 | logfile |
✔ | 6WD7 | 21626 | 2024-03-27 | 2020-03-31 | 3.9 | 4.24 | 4.25 | 4.1 | 0.006 | 0.98 | 0.0 | 0.08 | 21.85 | 0.01 | 2.166 | 9.61 | 0.62 | 11.7 | 86.5 | 1.9 | -4.81 | 0.81 | 0.80 | 0.76 | 4.0 | 0.006 | 0.78 | 0.0 | 0.04 | 23.68 | 0.01 | 2.026 | 30.15 | 7.73 | 11.3 | 88.6 | 0.1 | -2.80 | 1.55 | 0.84 | 0.83 | 0.64 | 150887 | 6113 | 60 | 4809 | 0 | 0 | 0 | logfile |