Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WHK	32503	2023-04-29	2021-12-30	3.01	2.59	—	3.1	0.004	0.70	1.0	0.05	11.56	0.01	2.208	7.01	6.30	5.6	94.1	0.3	-3.45	0.78	0.76	2.28	3.0	0.003	0.74	0.0	0.05	14.08	0.00	2.041	11.38	0.41	6.3	93.6	0.0	-1.41	0.71	0.79	0.82	2.57	29150	3697	11	0	28	0	0	logfile
✔	8HK1	34841	2023-04-29	2022-11-24	2.7	2.81	2.75	2.9	0.005	0.89	3.0	0.13	16.22	0.01	1.262	10.95	5.96	3.6	96.3	0.1	-2.81	0.56	0.61	2.14	2.8	0.005	0.78	0.0	0.05	16.67	0.00	2.036	7.86	4.06	5.1	94.9	0.0	0.06	1.31	0.66	0.81	2.51	30236	4205	24	148	5	0	0	logfile
✔	7WJY	32552	2023-04-29	2022-01-08	3.24	2.33	—	2.1	0.003	0.70	0.0	0.05	10.47	0.01	2.216	8.31	6.82	8.1	91.6	0.2	-4.98	0.69	0.71	2.44	2.1	0.006	0.75	0.0	0.05	14.07	0.01	2.092	11.26	0.56	10.2	89.8	0.0	-2.18	0.70	0.75	0.78	2.58	29429	3756	10	0	24	0	0	logfile
✔	6ZN5	11310	2023-04-29	2020-07-06	3.2	3.14	—	3.1	0.011	1.16	0.0	0.06	17.49	0.01	2.124	5.06	0.53	6.9	92.9	0.1	-4.30	0.80	0.80	2.26	3.1	0.003	0.63	0.0	0.04	17.53	0.00	2.106	10.23	0.53	5.1	94.8	0.0	-1.22	0.45	0.82	0.82	1.93	79377	5478	39	1671	3	0	0	logfile
✔	7VAL	31849	2023-04-29	2021-08-30	3.1	2.59	2.99	2.9	0.003	0.55	0.0	0.04	12.97	0.00	1.776	3.43	0.00	1.5	98.5	0.0	1.44	0.56	0.80	3.46	2.9	0.003	0.59	0.0	0.04	16.08	0.00	1.896	5.72	0.13	2.2	97.8	0.0	0.55	0.57	0.66	0.87	3.41	29558	3788	15	0	6	0	0	logfile
✘	5WVE	6690	2023-04-29	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.34	0.01	1.493	69.05	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	78605	9766	39	0	21	0	0	logfile
✔	8DEU	27399	2023-04-29	2022-06-21	2.95	3.22	3.03	3.1	0.006	0.97	0.0	0.05	15.77	0.00	2.211	14.97	3.07	4.7	95.3	0.0	-1.69	0.68	0.83	2.50	3.2	0.004	0.52	0.0	0.04	16.83	0.00	2.013	15.48	3.83	3.7	96.3	0.0	1.02	2.32	0.69	0.86	2.40	29088	3130	7	0	27	0	4959	logfile
✔	8D46	27176	2023-04-29	2022-06-01	2.84	3.04	2.86	3.1	0.004	0.77	0.0	0.05	17.11	0.01	2.196	4.90	2.97	3.4	96.6	0.0	-0.83	0.60	0.73	2.51	3.1	0.004	0.55	0.0	0.04	17.51	0.00	1.911	8.24	3.34	4.4	95.6	0.1	-0.34	0.39	0.61	0.74	2.49	30206	1956	4	0	0	0	15096	logfile
✘	7WoR	32656	2023-04-29	2022-01-22	3.7	2.87	—	3.2	0.003	0.53	0.0	0.05	9.19	0.01	2.216	8.02	5.34	7.7	92.2	0.1	-4.04	0.72	0.71	1.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29670	3799	9	0	23	0	0	logfile
✔	7VAM	31850	2023-04-29	2021-08-30	3.2	2.83	3.11	3.0	0.003	0.61	0.0	0.05	13.32	0.00	1.634	3.79	0.00	1.4	98.6	0.0	1.25	0.60	0.80	3.25	3.0	0.004	0.58	0.0	0.04	16.06	0.00	1.906	5.54	0.19	2.5	97.5	0.0	0.45	1.37	0.70	0.88	3.02	29558	3788	15	0	6	0	0	logfile
✔	7VAQ	31858	2023-04-29	2021-08-30	3.6	3.18	3.57	3.3	0.003	0.53	0.0	0.04	13.52	0.00	1.066	5.47	0.00	1.8	98.2	0.0	1.14	0.57	0.77	2.21	3.2	0.004	0.61	0.0	0.04	16.58	0.00	1.859	8.32	0.29	3.2	96.8	0.0	0.04	0.74	0.60	0.79	2.18	29558	3788	15	0	6	0	0	logfile
✔	7VAo	31854	2023-04-29	2021-08-30	3.4	3.03	3.34	3.2	0.004	0.56	0.0	0.04	13.49	0.00	2.144	4.61	0.00	2.3	97.7	0.0	1.13	0.58	0.80	2.81	3.1	0.004	0.59	0.0	0.04	16.37	0.00	1.898	6.43	0.19	2.8	97.2	0.0	0.10	0.67	0.63	0.84	2.50	29558	3788	15	0	6	0	0	logfile
✔	7PZP	13735	2023-04-29	2021-10-13	3.5	3.29	—	3.2	0.007	1.02	0.0	0.07	14.30	0.01	2.128	6.10	0.00	2.0	98.0	0.0	2.29	0.72	0.67	1.53	3.2	0.003	0.63	0.0	0.04	16.08	0.00	2.069	11.78	0.24	2.0	98.0	0.0	2.22	2.69	0.74	0.72	1.90	15602	1978	2	0	0	0	0	logfile
✔	7C4J	30285	2023-04-29	2020-05-18	2.89	3.14	—	3.0	0.008	0.96	3.0	0.06	16.23	0.00	2.196	10.66	6.35	5.8	93.4	0.8	-1.63	0.71	0.73	2.19	3.0	0.003	0.59	0.0	0.04	16.88	0.00	2.143	6.58	3.41	4.6	95.2	0.2	1.95	0.64	0.76	0.85	1.58	29757	3627	12	0	33	0	0	logfile
✔	7VAP	31857	2023-04-29	2021-08-30	3.0	2.45	2.98	2.9	0.004	0.54	0.0	0.04	13.36	0.00	1.645	3.89	0.00	2.0	98.0	0.0	1.43	0.54	0.79	3.19	2.9	0.003	0.58	0.0	0.04	17.12	0.00	1.931	5.93	2.50	2.3	97.7	0.0	0.60	0.62	0.63	0.85	2.90	29558	3788	15	0	6	0	0	logfile
✔	7U5C	26346	2023-04-29	2022-03-02	4.6	4.72	4.53	4.6	0.006	0.87	1.0	0.05	15.09	0.01	1.932	28.65	0.39	16.4	83.6	0.1	-5.85	0.77	0.76	—	4.6	0.003	0.70	0.0	0.04	14.59	0.00	1.915	15.85	0.00	8.7	91.3	0.0	-2.43	0.68	0.77	0.76	—	30077	3740	12	4	5	0	0	logfile
✔	7K9J	22750	2023-04-29	2020-09-29	3.0	3.59	3.08	3.5	0.005	0.84	1.0	0.06	13.02	0.01	2.084	8.81	0.57	3.8	96.2	0.0	-0.88	0.73	0.78	2.65	3.5	0.004	0.65	0.0	0.04	14.92	0.00	2.084	8.26	1.14	3.9	96.1	0.0	-0.53	0.46	0.73	0.80	2.25	29766	3627	54	0	111	0	0	logfile
✔	6JPU	9871	2023-04-29	2019-03-28	4.27	5.69	—	6.0	0.007	1.03	0.0	0.06	17.27	0.01	1.984	70.08	9.58	9.8	90.1	0.2	-3.97	0.80	0.76	—	5.2	0.003	0.67	0.0	0.04	13.41	0.00	1.861	100.50	0.00	10.5	89.5	0.0	-1.47	1.12	0.80	0.78	—	30378	3462	6	0	0	0	2610	logfile
✔	6ZH6	11215	2023-04-29	2020-06-21	3.93	4.77	4.04	4.1	0.003	0.68	0.0	0.04	14.44	0.00	2.170	12.73	0.00	8.0	91.9	0.1	-2.74	0.90	0.83	1.31	4.1	0.003	0.68	0.0	0.04	15.61	0.00	2.224	10.74	0.06	7.0	93.0	0.0	-0.08	1.14	0.90	0.84	1.02	29201	3677	2	0	28	0	0	logfile
✔	7LD1	23279	2023-04-29	2021-01-12	3.4	4.18	—	3.7	0.013	1.93	8.0	0.10	12.95	0.01	2.514	0.15	2.35	9.2	89.2	1.6	-2.22	0.84	0.79	2.71	3.7	0.004	0.70	0.0	0.04	13.50	0.00	2.164	7.49	0.29	7.6	92.3	0.0	-0.97	0.56	0.85	0.83	2.24	29444	4249	27	0	67	0	0	logfile

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