Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6LRS	0960	2023-04-29	2020-01-16	3.37	2.99	—	3.4	0.006	1.04	0.0	0.06	10.05	0.01	2.260	10.82	0.38	6.7	93.3	0.0	-5.21	0.63	0.74	2.94	3.4	0.003	0.69	0.0	0.04	15.06	0.00	2.117	19.64	0.76	4.7	95.3	0.0	-1.74	0.72	0.66	0.78	2.42	30156	3832	12	0	0	0	0	logfile
✔	7MDi	23773	2023-04-29	2021-04-05	4.3	4.42	—	4.3	0.006	0.75	0.0	0.04	13.13	0.00	2.089	11.76	0.17	10.8	89.2	0.1	-4.24	0.78	0.81	—	4.3	0.002	0.59	0.0	0.04	13.04	0.00	1.965	8.19	0.00	9.3	90.7	0.0	-1.47	0.46	0.78	0.81	—	30608	4348	20	0	24	24	0	logfile
✔	7WRC	32722	2023-04-29	2022-01-26	3.21	3.55	—	3.4	0.010	1.07	0.0	0.06	10.59	0.01	2.235	5.92	0.12	7.0	93.0	0.0	-3.90	0.71	0.77	2.04	3.4	0.005	0.70	0.0	0.04	14.64	0.00	2.159	12.36	0.45	5.4	94.6	0.0	0.46	1.73	0.74	0.83	1.86	30468	3720	8	0	8	0	0	logfile
✔	7VND	32039	2023-04-29	2021-10-10	3.6	3.59	—	3.5	0.009	0.75	0.0	0.05	14.15	0.00	2.170	9.07	0.00	8.1	91.9	0.0	-2.53	0.64	0.73	2.08	3.5	0.004	0.67	0.0	0.05	15.81	0.00	2.097	10.15	0.23	8.2	91.8	0.0	-1.90	0.43	0.67	0.79	1.80	27632	3442	24	0	52	0	0	logfile
✔	6BCJ	7081	2023-04-29	2017-10-20	3.14	3.22	—	3.2	0.008	0.97	0.0	0.05	9.60	0.01	2.301	2.63	0.38	5.9	94.1	0.0	-4.83	0.68	0.84	3.10	3.2	0.002	0.59	0.0	0.04	14.13	0.00	2.243	7.14	0.03	5.1	94.9	0.0	1.36	0.76	0.71	0.84	2.10	29868	3744	9	0	4	8	0	logfile
✔	6Y5D	10694	2023-04-29	2020-02-25	4.1	5.00	—	4.0	0.013	1.23	0.0	0.07	25.87	0.01	2.251	1.31	0.11	2.0	97.9	0.1	0.59	0.86	0.76	—	4.0	0.004	0.63	0.0	0.04	26.37	0.00	1.913	11.84	0.00	2.8	97.2	0.0	0.95	1.27	0.88	0.82	—	30372	2218	31	612	11	0	0	logfile
✔	7X0X	32928	2023-04-29	2022-02-22	2.56	3.09	2.66	3.0	0.008	1.00	0.0	0.06	15.31	0.01	2.280	3.83	1.15	4.7	95.3	0.0	-5.09	0.74	0.82	4.42	3.0	0.003	0.64	0.0	0.04	16.47	0.00	2.186	8.91	1.87	3.1	96.9	0.0	0.74	0.61	0.62	0.77	3.59	15680	1904	8	0	4	0	0	logfile
✔	6EEC	9041	2023-04-29	2018-08-13	3.55	3.91	—	3.8	0.011	1.02	2.0	0.05	15.64	0.01	1.828	36.23	0.55	11.6	88.1	0.3	-3.74	0.81	0.85	2.78	3.8	0.003	0.65	0.0	0.04	17.82	0.00	2.015	12.12	0.21	5.6	94.4	0.0	-0.49	0.69	0.81	0.85	1.99	29896	3508	12	128	4	0	0	logfile
✔	7W6M	32329	2023-04-29	2021-12-02	4.7	4.96	4.72	4.7	0.005	0.83	0.0	0.06	13.62	0.00	2.107	9.16	0.00	4.4	95.6	0.0	-0.63	0.85	0.80	—	4.7	0.004	0.74	0.0	0.05	13.62	0.00	2.036	13.13	0.00	6.2	93.8	0.0	-0.91	0.37	0.85	0.82	—	30756	3672	51	0	204	0	0	logfile
✘	7AoC	11840	2023-04-29	2020-10-14	3.84	3.91	—	3.9	0.007	0.88	0.0	0.05	15.05	0.01	1.929	15.82	0.33	11.2	88.5	0.3	-4.08	0.70	0.81	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29724	3746	17	0	6	0	0	logfile
✔	6YRK	10890	2023-04-29	2020-04-20	4.1	4.59	—	4.0	0.014	1.85	13.0	0.12	18.90	0.01	2.473	6.64	12.77	6.4	93.2	0.5	-2.49	0.68	0.44	—	4.1	0.003	0.72	0.0	0.04	14.01	0.00	2.124	20.91	0.00	5.0	94.9	0.1	-1.13	1.88	0.85	0.68	—	15058	1937	2	0	0	0	0	logfile
✘	6oPC	20149	2023-04-29	2019-04-24	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30015	4455	13	0	48	0	0	logfile
✔	6EE8	9039	2023-04-29	2018-08-13	3.92	4.56	—	4.0	0.007	1.04	2.0	0.06	15.74	0.01	2.082	7.88	0.65	6.5	93.4	0.1	-3.18	0.89	0.86	1.12	4.0	0.004	0.70	0.0	0.04	16.77	0.00	1.952	13.78	0.21	5.8	94.2	0.0	0.05	1.42	0.90	0.87	0.99	29784	3508	11	125	3	0	0	logfile
✔	7QBA	13885	2023-04-29	2021-11-18	3.78	3.61	—	3.7	0.006	1.07	18.0	0.06	13.93	0.01	1.363	16.56	0.72	5.6	94.1	0.4	-1.57	0.50	0.82	2.57	3.7	0.005	0.74	0.0	0.05	16.84	0.00	1.895	16.63	1.03	6.2	93.7	0.1	-1.12	0.57	0.51	0.84	1.99	20986	2694	11	0	6	0	0	logfile
✔	6V38	21029	2023-04-29	2019-11-25	3.8	3.97	—	3.8	0.014	1.47	0.0	0.07	18.17	0.02	2.255	15.24	4.55	5.3	94.7	0.0	-2.89	0.66	0.79	1.16	3.8	0.002	0.59	0.0	0.04	15.91	0.00	2.215	11.50	0.29	4.0	96.0	0.0	-0.37	0.65	0.66	0.80	0.96	29152	3496	8	0	56	0	0	logfile
✔	6M79	30128	2023-04-29	2020-03-18	3.1	3.20	3.11	3.2	0.008	0.75	0.0	0.05	14.66	0.00	2.067	5.52	3.99	3.9	96.1	0.0	-0.35	0.74	0.80	2.93	3.2	0.005	0.65	0.0	0.04	15.56	0.00	2.134	5.42	0.44	3.3	96.7	0.0	0.58	0.51	0.75	0.85	3.03	15324	1842	8	0	8	0	0	logfile
✘	7VB7	31874	2023-04-29	2021-08-30	2.4	2.41	—	2.4	0.007	0.77	1.0	0.05	16.42	0.01	1.988	6.35	1.28	3.0	96.9	0.1	0.48	0.76	0.90	5.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29279	3543	45	0	19	736	0	logfile
✔	6MDR	9104	2023-04-29	2018-09-05	3.47	3.55	—	3.5	0.007	0.93	0.0	0.06	9.55	0.01	2.349	3.19	0.00	6.6	93.4	0.0	-3.18	0.74	0.84	4.46	3.5	0.003	0.67	0.0	0.05	14.95	0.00	2.222	7.56	0.19	5.8	94.2	0.0	-1.25	1.28	0.74	0.85	3.26	29456	3696	16	0	0	0	0	logfile
✔	6ACJ	9593	2023-04-29	2018-07-26	4.2	4.37	—	4.2	0.010	1.33	2.0	0.07	11.28	0.01	1.731	12.04	0.61	16.8	82.7	0.6	-4.76	0.74	0.71	—	4.2	0.003	0.76	0.0	0.05	12.46	0.00	2.108	18.18	0.00	12.3	87.5	0.2	-2.61	2.04	0.74	0.71	—	29715	3784	4	0	0	0	0	logfile
✔	7PY3	13709	2023-04-29	2021-10-08	3.8	4.31	—	4.2	0.003	0.67	0.0	0.05	15.57	0.00	2.060	8.35	0.04	6.4	93.6	0.0	-1.94	0.78	0.78	1.22	4.2	0.004	0.65	0.0	0.04	17.16	0.00	1.992	13.09	0.15	8.0	91.9	0.1	-1.19	0.39	0.78	0.79	1.05	29362	3787	10	68	3	0	0	logfile

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