Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KWG	23052	2023-08-27	2020-11-30	3.75	3.89	—	3.8	0.009	1.43	1.0	0.07	17.12	0.01	2.227	5.46	2.86	10.7	88.8	0.4	-5.79	0.80	0.82	2.01	3.8	0.006	0.71	0.0	0.04	16.59	0.01	1.955	18.06	1.04	10.6	89.3	0.0	-2.56	1.28	0.80	0.81	1.61	51870	2251	21	1584	0	0	0	logfile
✔	8E4P	27895	2023-08-27	2022-08-18	3.59	4.02	3.50	3.9	0.004	0.75	0.0	0.05	13.14	0.00	2.242	7.79	0.00	3.0	97.0	0.0	2.88	0.65	0.74	1.40	3.8	0.003	0.47	0.0	0.03	13.81	0.00	2.116	8.42	0.16	3.2	96.8	0.0	2.77	0.46	0.66	0.76	1.18	51336	3596	8	0	12	0	24392	logfile
✔	7V2N	31657	2023-08-27	2021-08-09	3.6	3.38	3.41	3.1	0.008	1.21	2.0	0.11	17.76	0.00	2.085	8.71	0.63	7.0	92.7	0.3	-1.20	0.82	0.84	1.75	3.1	0.005	0.64	0.0	0.04	17.69	0.00	2.036	12.90	0.50	6.5	93.4	0.1	-0.26	0.37	0.81	0.84	1.43	51020	2626	24	1394	2	0	0	logfile
✔	7TF2	25859	2023-08-27	2022-01-06	3.62	4.27	—	3.8	0.004	0.74	0.0	0.05	13.20	0.01	2.277	3.32	0.35	2.1	97.9	0.0	-0.12	0.86	0.82	1.53	3.8	0.004	0.64	0.0	0.04	14.60	0.00	2.132	12.10	0.06	3.0	97.0	0.0	0.27	0.69	0.86	0.84	1.65	50292	6228	48	0	120	0	0	logfile
✔	7XSD	33524	2023-08-27	2022-05-13	3.3	2.86	3.23	2.8	0.009	1.34	0.0	0.06	11.07	0.01	2.253	7.34	0.77	7.2	92.7	0.1	-5.61	0.52	0.52	0.60	2.8	0.003	0.75	0.0	0.04	16.15	0.00	2.074	14.07	0.73	5.4	94.6	0.0	-2.01	1.76	0.57	0.62	1.56	49848	6272	32	0	0	0	0	logfile
✔	6RQH	4982	2023-08-27	2019-05-15	3.7	3.79	—	3.8	0.008	1.07	0.0	0.06	13.10	0.01	2.036	8.11	0.58	10.5	89.3	0.1	-5.22	0.67	0.68	1.59	3.8	0.003	0.65	0.0	0.04	16.44	0.00	2.077	11.41	0.20	6.6	93.4	0.0	-2.00	2.25	0.68	0.66	1.14	50851	6151	20	78	0	0	0	logfile
✔	7TAW	25788	2023-08-27	2021-12-21	2.7	3.38	—	3.2	0.003	0.67	0.0	0.04	14.86	0.01	2.234	7.30	0.06	4.5	95.5	0.0	-1.53	0.80	0.76	2.53	3.2	0.004	0.66	0.0	0.04	16.91	0.00	2.029	13.41	1.53	5.8	94.2	0.0	-0.40	1.27	0.78	0.82	2.39	51399	6242	24	160	0	0	0	logfile
✘	7Z5J	14522	2023-08-27	2022-03-09	2.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25576	3234	24	0	54	0	0	logfile
✔	7TF5	25862	2023-08-27	2022-01-06	3.16	3.97	—	3.4	0.004	0.75	0.0	0.05	13.23	0.01	2.262	3.03	0.37	2.1	97.9	0.0	-0.17	0.86	0.83	2.19	3.5	0.005	0.63	0.0	0.04	14.46	0.00	2.127	9.52	0.15	2.8	97.2	0.0	0.65	0.59	0.88	0.86	2.14	50298	6228	48	0	120	0	0	logfile
✘	6SL5	10236	2023-08-27	2019-08-18	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43789	3744	36	0	292	0	0	logfile
✘	6G53	4351	2023-08-27	2018-03-28	4.5	4.86	—	4.3	0.007	1.44	21.0	0.10	21.32	0.00	1.260	2.52	0.00	7.1	92.2	0.7	-2.88	0.67	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49052	5912	37	1659	0	0	0	logfile
✔	6G51	4350	2023-08-27	2018-03-28	4.1	4.42	—	4.0	0.007	1.44	22.0	0.10	21.21	0.00	0.264	3.79	0.00	7.0	92.3	0.8	-2.90	0.71	0.63	—	3.9	0.005	0.87	0.0	0.04	22.63	0.00	1.977	12.39	0.00	13.4	86.5	0.1	-2.16	1.66	0.81	0.69	—	50662	6237	38	1659	0	0	0	logfile
✔	6GMH	0031	2023-08-27	2018-05-26	3.1	3.78	3.06	3.2	0.006	0.97	0.0	0.06	12.73	0.01	1.921	5.48	0.53	4.8	95.1	0.1	-2.86	0.83	0.81	2.87	3.3	0.003	0.66	0.0	0.04	14.76	0.00	2.066	11.03	0.24	5.2	94.7	0.0	0.11	0.71	0.83	0.83	2.29	50239	6397	30	106	525	0	0	logfile
✔	6HRM	0261	2023-08-27	2018-09-27	2.96	3.03	—	3.0	0.010	1.02	0.0	0.17	14.98	0.02	2.029	3.00	0.49	5.2	94.8	0.1	-4.48	0.73	0.83	3.89	3.0	0.005	0.69	0.0	0.04	15.37	0.01	1.856	6.90	3.20	5.0	94.9	0.0	-1.36	1.14	0.72	0.84	2.99	145179	5972	64	4570	438	2	0	logfile
✔	7WTQ	32795	2023-08-27	2022-02-05	3.7	3.57	—	3.4	0.005	0.90	0.0	0.05	16.33	0.01	2.146	6.91	0.04	8.0	91.8	0.1	-1.90	0.82	0.79	1.74	3.4	0.007	0.81	0.0	0.04	17.09	0.01	1.974	17.27	0.91	9.7	90.2	0.1	-1.27	1.14	0.83	0.81	1.24	51309	3079	19	1255	1	0	0	logfile
✔	7V2P	31659	2023-08-27	2021-08-09	3.3	3.22	3.17	3.1	0.008	1.09	3.0	0.10	15.50	0.00	2.228	5.61	0.27	6.4	93.4	0.2	-0.50	0.83	0.89	2.28	3.1	0.005	0.61	0.0	0.04	15.77	0.00	2.066	7.98	0.54	6.4	93.4	0.1	-0.07	2.77	0.84	0.90	2.28	51135	2639	24	1394	2	0	0	logfile
✔	7XU6	33460	2023-08-27	2022-05-18	2.9	3.40	2.92	3.2	0.012	0.96	0.0	0.05	13.85	0.01	2.069	3.27	0.74	6.7	93.3	0.0	-1.74	0.80	0.78	2.99	3.2	0.003	0.56	0.0	0.04	14.70	0.00	1.936	8.19	0.74	4.8	95.2	0.0	-0.83	0.45	0.82	0.81	3.00	51464	3267	18	0	66	0	24902	logfile
✔	7TBH	25799	2023-08-27	2021-12-22	2.3	3.49	—	2.8	0.001	0.43	0.0	0.03	8.12	0.00	2.141	6.17	0.43	7.8	91.4	0.8	0.80	0.78	0.76	0.52	2.8	0.004	0.67	0.0	0.04	13.73	0.00	2.121	8.34	0.61	1.9	97.7	0.4	2.87	0.96	0.81	0.87	2.93	51768	6288	48	0	0	0	0	logfile
✘	6oFX	20048	2023-08-27	2019-04-01	3.3	4.60	—	2.8	0.008	1.07	0.0	0.09	14.39	0.01	2.098	16.59	0.43	9.3	90.1	0.6	-4.73	0.91	0.82	1.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	144986	5753	55	4659	0	0	0	logfile
✔	6MU2	9244	2023-08-27	2018-10-22	3.9	4.63	—	4.5	0.012	2.05	157.0	0.17	15.10	0.01	1.078	53.92	14.66	11.0	87.3	1.7	-1.58	0.70	0.68	0.40	4.5	0.007	1.10	3.0	0.06	15.83	0.01	1.939	33.68	2.58	12.3	87.2	0.5	-0.70	1.02	0.73	0.73	0.35	51404	8680	4	0	0	0	0	logfile

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