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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5T0G | 8334 | 2024-03-26 | 2016-08-16 | 4.4 | 4.09 | — | 4.4 | 0.005 | 0.93 | 1.0 | 0.05 | 11.89 | 0.00 | 1.763 | 18.04 | 0.10 | 7.5 | 91.7 | 0.8 | -3.88 | 0.68 | 0.56 | — | 3.9 | 0.003 | 0.89 | 0.0 | 0.05 | 13.51 | 0.01 | 2.046 | 24.60 | 0.04 | 6.8 | 92.8 | 0.4 | -1.66 | 1.28 | 0.70 | 0.68 | — | 77800 | 9924 | 39 | 0 | 7 | 0 | 0 | logfile |
✔ | 5o31 | 3731 | 2024-03-26 | 2017-05-23 | 4.13 | 4.19 | — | 4.1 | 0.008 | 1.37 | 11.0 | 1.11 | 14.05 | 0.01 | 2.512 | 2.82 | 2.22 | 9.3 | 88.3 | 2.4 | -4.78 | 0.70 | 0.73 | — | 4.1 | 0.009 | 1.82 | 0.0 | 0.33 | 12.95 | 0.00 | 2.063 | 13.64 | 0.00 | 9.4 | 90.2 | 0.4 | -1.57 | 2.17 | 0.70 | 0.76 | — | 52703 | 7006 | 52 | 0 | 816 | 0 | 0 | logfile |
✔ | 6YBW | 10775 | 2024-03-26 | 2020-03-18 | 3.1 | 3.30 | 2.98 | 3.2 | 0.008 | 1.06 | 0.0 | 0.05 | 22.64 | 0.02 | 2.097 | 4.22 | 3.04 | 3.7 | 96.3 | 0.0 | -2.06 | 0.74 | 0.87 | 3.02 | 3.2 | 0.003 | 0.67 | 0.0 | 0.04 | 22.48 | 0.01 | 1.929 | 8.34 | 3.92 | 2.7 | 97.3 | 0.0 | -0.16 | 1.12 | 0.74 | 0.88 | 2.97 | 52840 | 3374 | 30 | 1248 | 61 | 0 | 0 | logfile |
✔ | 8BH7 | 16049 | 2024-03-26 | 2022-10-30 | 4.23 | 9.20 | — | 4.5 | 0.005 | 0.83 | 0.0 | 0.07 | 25.73 | 0.01 | 2.136 | 63.21 | 0.43 | 7.8 | 92.2 | 0.0 | -3.39 | 0.91 | 0.80 | — | 4.5 | 0.004 | 0.80 | 0.0 | 0.04 | 25.35 | 0.01 | 1.941 | 58.93 | 0.05 | 11.7 | 88.3 | 0.0 | -2.72 | 1.32 | 0.92 | 0.82 | — | 52615 | 2464 | 21 | 1541 | 0 | 0 | 0 | logfile |
✔ | 7AEF | 11745 | 2024-03-26 | 2020-09-17 | 2.8 | 2.86 | — | 2.8 | 0.015 | 1.59 | 7.0 | 0.09 | 11.19 | 0.01 | 1.331 | 4.67 | 0.02 | 2.5 | 97.4 | 0.1 | -0.11 | 0.67 | 0.78 | 3.00 | 2.8 | 0.006 | 0.77 | 0.0 | 0.05 | 16.71 | 0.01 | 1.922 | 4.34 | 2.63 | 4.6 | 95.3 | 0.0 | -0.47 | 0.74 | 0.73 | 0.86 | 3.15 | 149535 | 19014 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WDC | 21631 | 2024-03-26 | 2020-03-31 | 4.2 | 4.07 | 4.55 | 3.9 | 0.006 | 1.01 | 0.0 | 0.08 | 22.00 | 0.01 | 2.262 | 11.85 | 1.14 | 13.3 | 84.6 | 2.1 | -5.10 | 0.77 | 0.73 | — | 3.9 | 0.005 | 0.83 | 0.0 | 0.04 | 23.70 | 0.01 | 1.973 | 31.36 | 0.08 | 13.4 | 86.5 | 0.1 | -3.35 | 1.58 | 0.80 | 0.77 | — | 150149 | 6024 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 8AGU | 15424 | 2024-03-26 | 2022-07-20 | 2.7 | 3.26 | 2.76 | 2.7 | 0.006 | 0.90 | 6.0 | 0.05 | 21.59 | 0.01 | 1.041 | 6.23 | 1.81 | 3.6 | 96.3 | 0.1 | 0.14 | 0.92 | 0.88 | 3.27 | 2.7 | 0.005 | 0.69 | 5.0 | 0.04 | 21.61 | 0.01 | 1.922 | 10.25 | 2.38 | 4.3 | 95.7 | 0.0 | 0.57 | 0.48 | 0.93 | 0.91 | 3.23 | 149748 | 9427 | 68 | 3568 | 38 | 0 | 0 | logfile |
✔ | 5ZEB | 6920 | 2024-03-26 | 2018-02-27 | 3.4 | 3.46 | — | 3.4 | 0.010 | 1.18 | 2.0 | 0.06 | 24.03 | 0.01 | 1.088 | 18.34 | 3.23 | 8.4 | 90.3 | 1.4 | -3.95 | 0.79 | 0.77 | 1.84 | 3.4 | 0.007 | 0.80 | 0.0 | 0.04 | 23.71 | 0.01 | 1.956 | 14.34 | 3.86 | 9.4 | 90.3 | 0.3 | -1.56 | 4.01 | 0.82 | 0.84 | 1.63 | 150328 | 6095 | 56 | 4802 | 0 | 0 | 0 | logfile |
✔ | 8AGX | 15427 | 2024-03-26 | 2022-07-20 | 2.4 | 3.19 | 2.52 | 2.5 | 0.006 | 0.93 | 5.0 | 0.05 | 21.77 | 0.01 | 1.296 | 4.14 | 2.04 | 3.7 | 96.2 | 0.1 | -0.44 | 0.92 | 0.89 | 3.34 | 2.6 | 0.004 | 0.63 | 1.0 | 0.04 | 21.68 | 0.00 | 1.910 | 8.64 | 2.02 | 4.4 | 95.6 | 0.0 | 0.51 | 0.46 | 0.94 | 0.93 | 3.42 | 149706 | 9204 | 68 | 3640 | 41 | 0 | 0 | logfile |
✘ | 8iR1 | 35672 | 2024-03-26 | 2023-03-17 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 150033 | 8866 | 54 | 3644 | 2 | 0 | 0 | logfile |
✔ | 6GSi | 0056 | 2024-03-26 | 2018-06-14 | 3.75 | 4.09 | — | 4.0 | 0.011 | 0.92 | 0.0 | 0.06 | 9.92 | 0.01 | 1.076 | 9.23 | 0.71 | 15.3 | 84.5 | 0.2 | -5.00 | 0.55 | 0.81 | 2.93 | 4.0 | 0.003 | 0.64 | 0.0 | 0.04 | 13.34 | 0.00 | 1.865 | 11.53 | 1.50 | 9.4 | 90.5 | 0.1 | -2.58 | 0.94 | 0.57 | 0.84 | 2.80 | 150378 | 9831 | 48 | 0 | 12 | 0 | 74247 | logfile |
✘ | 8iPD | 35639 | 2024-03-26 | 2023-03-14 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 149878 | 8564 | 53 | 3756 | 2 | 0 | 0 | logfile |
✔ | 7XC2 | 33112 | 2024-03-26 | 2022-03-22 | 3.0 | 3.52 | — | 2.8 | 0.007 | 0.83 | 0.0 | 0.05 | 12.95 | 0.00 | 2.093 | 8.50 | 1.80 | 7.3 | 92.7 | 0.0 | -2.27 | 0.80 | 0.71 | 2.27 | 2.9 | 0.004 | 0.59 | 0.0 | 0.04 | 14.58 | 0.00 | 2.202 | 6.24 | 1.13 | 5.3 | 94.7 | 0.0 | 0.38 | 2.00 | 0.93 | 0.90 | 1.89 | 52070 | 6445 | 15 | 0 | 5 | 0 | 0 | logfile |
✔ | 5MDW | 3490 | 2024-03-26 | 2016-11-13 | 3.06 | 3.16 | 3.07 | 3.1 | 0.009 | 1.33 | 26.0 | 0.11 | 23.73 | 0.02 | 1.464 | 3.52 | 7.69 | 5.6 | 93.9 | 0.5 | -1.97 | 0.81 | 0.89 | 2.64 | 3.1 | 0.008 | 0.75 | 0.0 | 0.04 | 23.01 | 0.01 | 1.786 | 7.83 | 5.78 | 4.1 | 95.9 | 0.0 | -0.19 | 1.15 | 0.83 | 0.89 | 2.54 | 149607 | 6346 | 67 | 4638 | 440 | 2 | 0 | logfile |
✔ | 6iXH | 9747 | 2024-03-26 | 2018-12-10 | 4.0 | 4.11 | — | 4.0 | 0.010 | 1.11 | 0.0 | 0.06 | 15.28 | 0.01 | 2.228 | 6.64 | 0.60 | 7.6 | 92.0 | 0.4 | -4.89 | 0.84 | 0.87 | — | 4.0 | 0.008 | 0.88 | 0.0 | 0.05 | 16.91 | 0.00 | 2.098 | 16.23 | 4.46 | 7.5 | 92.4 | 0.1 | -2.22 | 0.60 | 0.85 | 0.87 | — | 52280 | 6785 | 25 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FL7 | 29269 | 2024-03-26 | 2022-12-21 | 2.55 | 2.80 | 2.68 | 2.9 | 0.007 | 0.74 | 0.0 | 0.04 | 21.70 | 0.03 | 1.958 | 2.09 | 0.01 | 1.3 | 98.7 | 0.0 | 0.88 | 0.86 | 0.86 | 4.06 | 2.9 | 0.003 | 0.71 | 1.0 | 0.04 | 22.17 | 0.01 | 1.837 | 5.88 | 1.94 | 1.9 | 98.1 | 0.0 | 1.13 | 0.43 | 0.85 | 0.87 | 3.66 | 149506 | 8711 | 69 | 3684 | 95 | 0 | 0 | logfile |
✔ | 7UGU | 26406 | 2024-03-26 | 2022-03-25 | 2.6 | 2.77 | 2.61 | 2.8 | 0.014 | 2.09 | 33.0 | 0.10 | 14.05 | 0.02 | 2.521 | 0.04 | 0.73 | 5.0 | 94.9 | 0.1 | -2.11 | 0.64 | 0.75 | 3.42 | 2.8 | 0.004 | 0.69 | 0.0 | 0.04 | 16.85 | 0.01 | 1.823 | 4.25 | 3.85 | 5.8 | 94.2 | 0.0 | -1.07 | 1.40 | 0.61 | 0.74 | 2.45 | 52752 | 3488 | 8 | 0 | 0 | 0 | 26176 | logfile |
✔ | 7RFi | 24443 | 2024-03-26 | 2021-07-14 | 2.6 | 2.65 | — | 2.6 | 0.014 | 1.87 | 8.0 | 0.11 | 19.32 | 0.01 | 2.335 | 3.53 | 1.61 | 4.0 | 95.6 | 0.4 | -1.71 | 0.67 | 0.87 | 5.21 | 2.6 | 0.004 | 0.81 | 2.0 | 0.04 | 18.60 | 0.00 | 2.016 | 4.57 | 1.42 | 3.5 | 96.5 | 0.0 | 0.00 | 0.63 | 0.66 | 0.88 | 4.66 | 52194 | 3376 | 16 | 0 | 32 | 0 | 25698 | logfile |
✔ | 8UZ0 | 42829 | 2024-03-26 | 2023-11-14 | 2.8 | 3.08 | 2.94 | 3.1 | 0.012 | 1.89 | 40.0 | 0.11 | 15.93 | 0.02 | 1.973 | 0.23 | 3.11 | 3.7 | 96.2 | 0.1 | -1.29 | 0.69 | 0.81 | 4.01 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 16.78 | 0.00 | 1.907 | 5.03 | 1.88 | 3.1 | 96.9 | 0.0 | 0.63 | 1.55 | 0.63 | 0.80 | 3.17 | 52290 | 3348 | 18 | 0 | 18 | 0 | 25857 | logfile |
✔ | 8UZ1 | 42830 | 2024-03-26 | 2023-11-14 | 3.6 | 3.84 | 3.63 | 3.9 | 0.012 | 1.91 | 30.0 | 0.11 | 15.16 | 0.01 | 1.829 | 0.04 | 1.34 | 4.9 | 94.9 | 0.2 | -1.77 | 0.76 | 0.83 | 3.08 | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 15.51 | 0.00 | 0.770 | 6.48 | 1.52 | 3.9 | 96.1 | 0.0 | -0.24 | 1.52 | 0.70 | 0.81 | 2.01 | 52329 | 3348 | 18 | 0 | 27 | 0 | 25860 | logfile |