Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GXX	34364	2023-04-29	2022-09-21	3.0	2.61	3.12	2.9	0.006	0.56	0.0	0.04	11.56	0.00	1.758	5.57	0.06	3.0	96.9	0.0	0.65	0.67	0.82	3.77	2.8	0.003	0.59	0.0	0.04	16.97	0.00	1.956	7.51	2.76	2.1	97.9	0.0	0.94	1.10	0.74	0.85	3.19	29553	3788	15	0	5	0	0	logfile
✔	7MXD	24071	2023-04-29	2021-05-19	3.4	3.54	3.38	3.5	0.005	0.72	1.0	0.06	14.28	0.00	2.107	7.65	0.00	5.9	94.1	0.0	-1.62	0.80	0.80	2.29	3.5	0.004	0.61	0.0	0.05	15.77	0.00	2.125	8.46	0.35	6.2	93.8	0.0	-0.94	0.32	0.82	0.85	2.04	29496	3519	58	0	146	0	0	logfile
✔	6RiC	4888	2023-04-29	2019-04-23	2.8	2.91	2.91	2.8	0.006	0.75	0.0	0.05	14.01	0.01	2.068	5.10	0.03	3.5	96.5	0.0	-4.16	0.76	0.83	4.00	2.9	0.004	0.64	0.0	0.05	16.52	0.00	2.057	10.81	1.67	3.1	96.9	0.0	-0.09	1.02	0.79	0.89	3.45	29677	3663	12	0	5	0	0	logfile
✔	7VNJ	32041	2023-04-29	2021-10-11	2.56	2.25	—	2.5	0.003	0.52	0.0	0.04	13.80	0.00	2.166	5.63	0.40	5.0	95.0	0.0	-0.46	0.69	0.78	3.16	2.3	0.003	0.61	0.0	0.05	16.17	0.00	2.128	6.50	1.99	5.7	94.3	0.0	-0.05	0.58	0.79	0.88	3.87	30661	3856	15	0	21	0	0	logfile
✔	6VBU	21144	2023-04-29	2019-12-19	3.1	3.24	3.18	3.2	0.005	0.69	1.0	0.05	14.74	0.00	2.096	12.13	0.24	6.5	93.5	0.0	-3.06	0.73	0.75	2.48	3.2	0.003	0.63	0.0	0.04	16.66	0.00	2.143	11.95	0.15	5.1	94.8	0.0	-0.21	0.64	0.75	0.80	2.16	30209	3820	9	0	2	0	0	logfile
✘	7N4E	24148	2023-04-29	2021-06-04	3.8	3.85	—	3.8	0.004	0.72	0.0	0.04	17.45	0.01	1.705	13.32	3.45	4.3	95.7	0.0	-0.65	0.78	0.77	1.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29822	3559	10	89	3	0	0	logfile
✔	8DBF	27282	2023-04-29	2022-06-14	2.2	2.32	2.21	2.3	0.014	0.99	0.0	0.05	17.66	0.05	1.866	9.33	3.08	4.1	95.9	0.0	0.97	0.74	0.87	5.47	2.3	0.003	1.61	0.0	0.05	17.73	0.00	1.853	5.92	1.93	2.2	97.8	0.0	0.39	1.14	0.75	0.89	5.72	29964	3792	36	0	60	84	0	logfile
✔	5SZS	8331	2023-04-29	2016-08-15	3.4	3.57	—	3.5	0.024	3.04	3.0	0.20	11.59	0.01	1.476	3.47	0.68	5.7	93.7	0.6	-0.27	0.85	0.83	2.56	3.5	0.003	0.71	0.0	0.05	13.96	0.00	2.161	5.80	0.26	5.2	94.5	0.3	0.03	0.71	0.85	0.86	2.55	30306	3531	69	0	222	0	0	logfile
✔	6H3N	0136	2023-04-29	2018-07-19	3.25	3.45	—	3.4	0.015	1.52	0.0	0.07	10.78	0.01	2.457	1.67	0.00	4.7	94.6	0.7	-0.43	0.77	0.79	4.55	3.4	0.003	0.56	0.0	0.04	14.71	0.00	1.908	5.73	0.25	3.7	96.3	0.0	-0.01	1.46	0.71	0.77	4.07	29319	1881	3	0	0	0	14388	logfile
✔	7Ni0	12348	2023-04-29	2021-02-11	3.32	3.94	—	3.7	0.003	0.66	0.0	0.04	14.41	0.01	1.874	14.80	0.06	4.1	95.8	0.1	-2.29	0.81	0.74	1.76	3.7	0.004	0.62	0.0	0.04	15.97	0.00	1.924	14.50	0.19	4.5	95.4	0.1	-0.05	0.84	0.81	0.79	1.54	29334	1794	5	23	0	0	14500	logfile
✘	7AoC	11840	2023-04-29	2020-10-14	3.84	3.91	—	3.9	0.007	0.88	0.0	0.05	15.05	0.01	1.929	15.82	0.33	11.2	88.5	0.3	-4.08	0.70	0.81	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29724	3746	17	0	6	0	0	logfile
✔	6MDR	9104	2023-04-29	2018-09-05	3.47	3.55	—	3.5	0.007	0.93	0.0	0.06	9.55	0.01	2.349	3.19	0.00	6.6	93.4	0.0	-3.18	0.74	0.84	4.46	3.5	0.003	0.67	0.0	0.05	14.95	0.00	2.222	7.56	0.19	5.8	94.2	0.0	-1.25	1.28	0.74	0.85	3.26	29456	3696	16	0	0	0	0	logfile
✔	6YRK	10890	2023-04-29	2020-04-20	4.1	4.59	—	4.0	0.014	1.85	13.0	0.12	18.90	0.01	2.473	6.64	12.77	6.4	93.2	0.5	-2.49	0.68	0.44	—	4.1	0.003	0.72	0.0	0.04	14.01	0.00	2.124	20.91	0.00	5.0	94.9	0.1	-1.13	1.88	0.85	0.68	—	15058	1937	2	0	0	0	0	logfile
✘	7VB7	31874	2023-04-29	2021-08-30	2.4	2.41	—	2.4	0.007	0.77	1.0	0.05	16.42	0.01	1.988	6.35	1.28	3.0	96.9	0.1	0.48	0.76	0.90	5.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29279	3543	45	0	19	736	0	logfile
✔	6Z16	11027	2023-04-29	2020-05-12	2.98	2.98	—	3.1	0.008	1.13	0.0	0.06	12.51	0.01	2.238	3.49	0.10	4.5	95.5	0.0	-2.64	0.73	0.83	3.55	3.1	0.003	0.69	0.0	0.04	15.59	0.00	2.056	11.04	1.91	4.2	95.8	0.0	1.13	1.31	0.74	0.83	2.71	30250	3744	24	0	30	0	0	logfile
✔	6LNB	0929	2023-04-29	2019-12-28	3.18	2.72	—	3.0	0.006	1.07	1.0	0.06	13.32	0.01	2.202	3.97	0.50	12.1	87.9	0.0	-5.23	0.70	0.76	3.53	3.0	0.004	0.71	0.0	0.04	16.03	0.01	2.131	9.17	0.33	11.4	88.6	0.0	-2.80	0.55	0.70	0.79	2.82	29583	3425	13	100	0	0	0	logfile
✔	7RES	24438	2023-04-29	2021-07-13	3.05	2.96	—	2.9	0.017	1.40	3.0	0.06	16.62	0.00	2.150	11.59	4.87	7.0	93.0	0.1	-3.02	0.64	0.83	4.11	3.0	0.003	0.56	0.0	0.04	16.73	0.00	2.062	9.92	0.29	4.7	95.3	0.0	-0.49	1.12	0.64	0.84	3.12	30088	3856	16	0	32	0	0	logfile
✘	6oPC	20149	2023-04-29	2019-04-24	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30015	4455	13	0	48	0	0	logfile
✔	7VND	32039	2023-04-29	2021-10-10	3.6	3.59	—	3.5	0.009	0.75	0.0	0.05	14.15	0.00	2.170	9.07	0.00	8.1	91.9	0.0	-2.53	0.64	0.73	2.08	3.5	0.004	0.67	0.0	0.05	15.81	0.00	2.097	10.15	0.23	8.2	91.8	0.0	-1.90	0.43	0.67	0.79	1.80	27632	3442	24	0	52	0	0	logfile
✔	6N57	0348	2023-04-29	2018-11-21	3.7	3.83	—	3.8	0.012	1.14	3.0	0.06	10.41	0.01	1.366	39.05	0.37	15.4	84.0	0.6	-4.55	0.75	0.82	2.12	3.8	0.003	0.69	0.0	0.04	15.32	0.00	2.140	11.35	0.21	7.2	92.6	0.2	-0.93	2.04	0.72	0.80	1.47	30233	3841	11	0	8	0	0	logfile

• ← previous
• Page 5 of 372
• next →