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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7UNR | 26630 | 2024-03-25 | 2022-04-11 | 2.9 | 3.18 | 2.93 | 3.1 | 0.005 | 0.64 | 2.0 | 0.04 | 22.70 | 0.02 | 1.879 | 6.56 | 0.26 | 7.2 | 92.4 | 0.4 | -1.63 | 0.79 | 0.88 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 149327 | 6502 | 82 | 4606 | 632 | 200 | 0 | logfile |
✔ | 7ZX7 | 15006 | 2024-03-25 | 2022-05-20 | 3.4 | 4.37 | 3.42 | 3.0 | 0.004 | 0.52 | 0.0 | 0.04 | 17.07 | 0.00 | 1.385 | 9.44 | 0.00 | 3.0 | 97.0 | 0.0 | 1.17 | 0.88 | 0.76 | 0.98 | 3.0 | 0.006 | 0.75 | 0.0 | 0.04 | 18.10 | 0.00 | 1.931 | 18.80 | 1.44 | 4.1 | 95.9 | 0.0 | 0.82 | 2.27 | 0.91 | 0.85 | 1.46 | 49277 | 5789 | 32 | 132 | 12 | 0 | 0 | logfile |
✘ | 7A4P | 11640 | 2024-03-25 | 2020-08-20 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48636 | 4086 | 38 | 0 | 337 | 0 | 0 | logfile |
✔ | 5KPS | 8279 | 2024-03-25 | 2016-07-05 | 3.9 | 5.38 | 4.05 | 3.9 | 0.008 | 1.11 | 0.0 | 0.08 | 22.56 | 0.01 | 1.923 | 27.29 | 0.32 | 12.5 | 82.8 | 4.6 | -4.23 | 0.90 | 0.78 | 0.50 | 3.9 | 0.004 | 0.73 | 0.0 | 0.04 | 23.82 | 0.01 | 2.016 | 31.04 | 4.36 | 10.0 | 89.2 | 0.8 | -2.04 | 2.12 | 0.95 | 0.90 | 0.23 | 149128 | 6091 | 58 | 4734 | 0 | 0 | 0 | logfile |
✔ | 6UTF | 20877 | 2024-03-25 | 2019-10-29 | 3.4 | 4.04 | 3.76 | 4.0 | 0.009 | 1.29 | 0.0 | 0.07 | 10.41 | 0.01 | 2.036 | 7.47 | 0.70 | 5.7 | 93.9 | 0.5 | -3.27 | 0.75 | 0.77 | 1.47 | 4.0 | 0.004 | 0.87 | 0.0 | 0.05 | 16.82 | 0.00 | 2.085 | 16.59 | 4.60 | 5.9 | 94.1 | 0.1 | -0.60 | 2.05 | 0.77 | 0.81 | 1.08 | 46494 | 6013 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HRA | 34965 | 2024-03-25 | 2022-12-15 | 3.76 | 3.86 | 3.86 | 3.8 | 0.003 | 0.50 | 0.0 | 0.04 | 15.37 | 0.00 | 2.207 | 6.03 | 0.02 | 4.4 | 95.6 | 0.0 | -0.18 | 0.77 | 0.85 | 1.80 | 3.8 | 0.003 | 0.51 | 0.0 | 0.04 | 16.70 | 0.00 | 2.128 | 7.20 | 1.35 | 4.3 | 95.6 | 0.1 | 0.62 | 1.13 | 0.76 | 0.85 | 1.38 | 48146 | 5885 | 14 | 51 | 4 | 0 | 0 | logfile |
✔ | 7R4R | 14315 | 2024-03-25 | 2022-02-09 | 3.9 | 4.20 | — | 6.8 | 0.036 | 4.11 | 135.0 | 0.31 | 18.82 | 0.03 | 1.228 | 59.98 | 7.44 | 8.5 | 91.3 | 0.2 | -3.20 | 0.62 | 0.41 | -0.13 | 5.7 | 0.006 | 1.43 | 18.0 | 0.24 | 16.22 | 0.00 | 1.707 | 35.48 | 6.54 | 9.7 | 90.2 | 0.1 | -2.52 | 1.26 | 0.68 | 0.60 | -0.26 | 50505 | 3293 | 12 | 0 | 43 | 0 | 24171 | logfile |
✘ | 7TYR | 26192 | 2024-03-25 | 2022-02-14 | 3.33 | 3.67 | 3.41 | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 19.61 | 0.00 | 2.171 | 8.15 | 2.70 | 5.1 | 94.7 | 0.2 | 0.19 | 0.79 | 0.79 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31610 | 3957 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5N61 | 3593 | 2024-03-25 | 2017-02-14 | 3.4 | 3.59 | — | 3.5 | 0.012 | 1.19 | 0.0 | 0.05 | 14.86 | 0.01 | 0.343 | 36.26 | 7.23 | 9.1 | 88.8 | 2.1 | -4.08 | 0.72 | 0.65 | 2.60 | 3.5 | 0.003 | 0.73 | 0.0 | 0.04 | 16.48 | 0.00 | 2.018 | 14.67 | 2.45 | 5.5 | 94.3 | 0.2 | -0.48 | 2.74 | 0.81 | 0.84 | 2.07 | 48547 | 5887 | 27 | 79 | 9 | 0 | 0 | logfile |
✔ | 6TU3 | 10586 | 2024-03-25 | 2020-01-02 | 2.7 | 2.82 | 2.74 | 2.8 | 0.006 | 0.81 | 0.0 | 0.05 | 16.10 | 0.01 | 1.264 | 9.26 | 8.29 | 5.8 | 94.2 | 0.0 | -2.57 | 0.76 | 0.83 | 2.83 | 2.8 | 0.005 | 0.72 | 0.0 | 0.05 | 17.46 | 0.01 | 2.031 | 6.60 | 4.52 | 4.7 | 95.3 | 0.0 | -0.09 | 0.56 | 0.77 | 0.85 | 2.77 | 47002 | 6158 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SSo | 25411 | 2024-03-25 | 2021-11-11 | 3.2 | 3.61 | 3.43 | 3.3 | 0.010 | 1.02 | 0.0 | 0.08 | 23.20 | 0.01 | 1.353 | 14.35 | 0.93 | 11.4 | 88.1 | 0.6 | -4.86 | 0.85 | 0.86 | 1.78 | 3.3 | 0.004 | 0.61 | 0.0 | 0.03 | 22.96 | 0.00 | 2.016 | 13.09 | 3.74 | 10.1 | 89.7 | 0.1 | -2.04 | 1.00 | 0.85 | 0.86 | 1.49 | 148980 | 6070 | 60 | 4735 | 0 | 0 | 0 | logfile |
✔ | 7PXA | 13695 | 2024-03-25 | 2021-10-08 | 2.8 | 2.56 | — | 2.8 | 0.002 | 0.42 | 0.0 | 0.04 | 9.39 | 0.00 | 2.147 | 3.67 | 1.14 | 1.5 | 98.5 | 0.0 | 2.60 | 0.76 | 0.84 | 2.86 | 2.8 | 0.004 | 0.59 | 0.0 | 0.04 | 15.18 | 0.00 | 2.077 | 5.39 | 2.84 | 2.3 | 97.7 | 0.0 | 2.16 | 1.44 | 0.77 | 0.87 | 2.78 | 46614 | 6187 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UTi | 20880 | 2024-03-25 | 2019-10-29 | 3.4 | 3.66 | 3.48 | 3.7 | 0.007 | 1.12 | 0.0 | 0.06 | 10.05 | 0.01 | 2.232 | 3.12 | 0.22 | 5.1 | 94.8 | 0.1 | -2.89 | 0.75 | 0.83 | 2.32 | 3.6 | 0.004 | 0.89 | 7.0 | 0.05 | 15.24 | 0.01 | 2.151 | 5.05 | 2.30 | 3.2 | 96.7 | 0.1 | 0.53 | 1.37 | 0.74 | 0.86 | 2.35 | 46396 | 6006 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DFA | 27403 | 2024-03-25 | 2022-06-21 | 2.8 | 3.02 | 2.79 | 3.0 | 0.037 | 2.80 | 322.0 | 0.32 | 16.53 | 0.01 | 1.474 | 3.88 | 1.63 | 5.3 | 94.6 | 0.0 | -1.30 | 0.69 | 0.65 | 3.15 | 3.0 | 0.011 | 0.96 | 0.0 | 0.06 | 17.87 | 0.01 | 1.914 | 5.57 | 1.76 | 4.7 | 95.3 | 0.0 | -0.41 | 1.38 | 0.80 | 0.83 | 2.65 | 46813 | 2855 | 13 | 64 | 0 | 0 | 23023 | logfile |
✔ | 7Q59 | 13829 | 2024-03-25 | 2021-11-03 | 4.36 | 4.89 | — | 4.4 | 0.003 | 0.63 | 0.0 | 0.04 | 10.22 | 0.00 | 1.925 | 6.09 | 0.72 | 3.6 | 96.4 | 0.0 | -0.17 | 0.79 | 0.65 | — | 4.4 | 0.004 | 0.69 | 0.0 | 0.04 | 11.74 | 0.00 | 1.967 | 16.26 | 0.00 | 4.5 | 95.5 | 0.0 | -0.14 | 1.43 | 0.90 | 0.84 | — | 47632 | 6118 | 14 | 0 | 6 | 0 | 0 | logfile |
✘ | 6iGZ | 9670 | 2024-03-25 | 2018-09-27 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 51585 | 4518 | 44 | 0 | 320 | 0 | 0 | logfile |
✔ | 7V7i | 31772 | 2024-03-25 | 2021-08-21 | 3.3 | 4.09 | — | 3.8 | 0.005 | 0.67 | 0.0 | 0.05 | 14.45 | 0.00 | 2.128 | 8.29 | 0.00 | 5.4 | 94.5 | 0.2 | -0.23 | 0.86 | 0.85 | 2.37 | 3.8 | 0.003 | 0.55 | 0.0 | 0.04 | 14.14 | 0.00 | 1.980 | 6.73 | 1.25 | 4.6 | 95.3 | 0.1 | -0.04 | 0.31 | 0.87 | 0.87 | 1.87 | 51072 | 6228 | 84 | 0 | 174 | 0 | 0 | logfile |
✔ | 6WSG | 21892 | 2024-03-25 | 2020-04-30 | 3.16 | 3.73 | — | 3.5 | 0.011 | 0.83 | 0.0 | 0.05 | 13.60 | 0.01 | 1.970 | 3.31 | 0.04 | 0.7 | 99.3 | 0.0 | -1.08 | 0.76 | 0.73 | 3.52 | 3.5 | 0.002 | 0.61 | 0.0 | 0.04 | 14.86 | 0.00 | 1.839 | 6.86 | 0.65 | 2.3 | 97.7 | 0.0 | 1.01 | 1.06 | 0.73 | 0.79 | 3.07 | 52087 | 3334 | 26 | 0 | 9 | 7 | 26155 | logfile |
✔ | 6Z2W | 11050 | 2024-03-25 | 2020-05-18 | 2.82 | 3.21 | — | 3.2 | 0.008 | 1.18 | 0.0 | 0.07 | 11.99 | 0.01 | 2.071 | 5.92 | 0.81 | 8.5 | 91.5 | 0.0 | -4.67 | 0.64 | 0.79 | 2.57 | 3.2 | 0.003 | 0.73 | 0.0 | 0.04 | 15.91 | 0.00 | 1.933 | 13.47 | 2.58 | 6.9 | 93.1 | 0.0 | -0.99 | 1.25 | 0.62 | 0.79 | 1.89 | 46588 | 5766 | 8 | 0 | 8 | 4 | 0 | logfile |
✔ | 6LB0 | 0866 | 2024-03-25 | 2019-11-13 | 3.6 | 3.79 | — | 3.7 | 0.006 | 0.86 | 0.0 | 0.05 | 13.62 | 0.01 | 0.919 | 7.46 | 0.00 | 6.5 | 93.5 | 0.0 | -3.90 | 0.74 | 0.89 | 4.20 | 3.7 | 0.002 | 0.61 | 0.0 | 0.04 | 14.50 | 0.00 | 2.016 | 7.35 | 3.76 | 4.6 | 95.4 | 0.0 | -2.14 | 0.52 | 0.74 | 0.89 | 3.90 | 148140 | 19440 | 60 | 0 | 0 | 0 | 0 | logfile |