Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8EFB	28077	2023-11-14	2022-09-08	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8947	1136	6	0	1	0	0	logfile
✘	6PP7	20421	2023-11-21	2019-07-05	4.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32499	2081	13	0	25	0	16296	logfile
✔	5FN4	3239	2023-11-14	2015-11-10	4.0	4.24	—	4.2	0.010	1.71	17.0	0.10	18.07	0.01	2.131	10.17	10.51	12.0	84.8	3.2	-1.44	0.61	0.55	—	4.1	0.004	0.89	0.0	0.05	17.23	0.01	2.157	20.48	0.57	7.4	91.9	0.6	-0.37	1.73	0.69	0.79	—	9776	1250	5	0	0	0	0	logfile
✘	7E2Y	30972	2023-11-14	2021-02-07	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6987	868	4	0	6	0	0	logfile
✘	7D1T	30547	2023-11-13	2020-09-15	1.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✔	7PDG	13337	2023-11-14	2021-08-05	4.3	4.51	—	3.1	0.005	0.82	0.0	0.05	14.59	0.00	2.161	16.17	0.00	5.2	94.8	0.0	-0.49	0.58	0.72	—	3.1	0.003	0.73	0.0	0.04	14.74	0.00	2.173	12.63	0.00	4.3	95.7	0.0	0.21	0.88	0.58	0.72	—	7642	970	2	0	0	0	0	logfile
✘	6Po1	20406	2023-11-13	2019-07-03	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53244	3407	20	0	18	0	26717	logfile
✔	7E8B	31013	2023-11-22	2021-03-01	4.2	3.74	4.28	3.8	0.003	0.61	0.0	0.04	14.23	0.00	2.120	15.19	0.05	7.3	92.7	0.0	-1.09	0.67	0.65	—	3.6	0.005	0.74	0.0	0.05	14.51	0.01	2.108	21.99	0.05	9.2	90.8	0.0	-1.45	0.58	0.68	0.68	—	36832	4580	8	0	0	0	0	logfile
✔	5J8V	8073	2023-11-18	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	0.96	4.0	0.04	9.37	0.00	2.173	6.74	0.32	9.5	88.8	1.7	0.19	0.81	0.75	0.74	—	73616	13812	4	0	0	0	0	logfile
✘	6R93	4767	2023-11-18	2019-04-02	4.0	4.29	—	4.1	0.010	1.48	2.0	0.10	29.24	0.01	1.600	2.04	0.00	2.5	97.0	0.5	0.30	0.78	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22961	775	10	290	0	0	10123	logfile
✘	7DR2	30823	2023-11-20	2020-12-25	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	89952	8588	76	0	438	0	0	logfile
✔	6VFL	21186	2023-11-16	2020-01-05	4.14	4.24	4.09	4.2	0.020	1.69	0.0	0.10	10.16	0.01	2.247	1.36	0.20	1.4	98.6	0.0	0.90	0.77	0.84	—	4.2	0.007	0.83	0.0	0.05	13.18	0.00	2.054	11.25	0.00	4.1	95.9	0.0	0.15	0.85	0.77	0.85	—	14925	1710	42	0	102	0	0	logfile
✔	7NPU	12521	2023-11-17	2021-02-28	4.48	4.74	4.43	3.8	0.008	1.19	0.0	0.06	11.87	0.01	2.086	1.37	0.37	1.8	98.1	0.1	-0.61	0.66	0.68	—	3.8	0.003	0.60	0.0	0.04	12.55	0.00	1.902	8.02	0.00	2.8	97.2	0.0	1.44	3.28	0.69	0.76	—	126727	8230	24	0	0	0	64397	logfile
✔	7RZ9	24755	2023-11-19	2021-08-27	4.15	3.58	—	4.1	0.007	0.98	0.0	0.05	10.41	0.01	2.264	3.46	0.26	5.6	94.4	0.0	-5.15	0.68	0.80	—	4.1	0.003	0.60	0.0	0.04	13.04	0.00	2.174	8.74	0.00	3.5	96.5	0.0	0.04	1.16	0.69	0.78	—	27934	3550	4	0	0	0	0	logfile
✔	6oFJ	20047	2023-11-15	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.69	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.58	0.0	0.04	14.03	0.00	2.002	10.00	0.00	8.7	91.3	0.0	-1.93	1.22	0.56	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	8G6K	29772	2023-11-14	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.003	0.60	0.0	0.04	4.50	0.00	2.284	2.64	0.00	6.7	93.3	0.0	0.05	1.47	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile
✔	7F24	31427	2023-11-15	2021-06-10	4.16	4.05	—	4.0	0.009	1.05	0.0	0.06	15.53	0.01	2.076	24.77	0.65	5.1	94.8	0.1	-2.40	0.69	0.76	—	4.0	0.003	0.72	0.0	0.05	14.76	0.00	2.180	18.15	0.26	3.8	96.2	0.0	0.02	1.38	0.69	0.75	—	7165	900	6	0	2	0	0	logfile
✔	7S7B	24882	2023-11-18	2021-09-15	4.06	3.82	—	3.6	0.004	0.46	0.0	0.04	10.74	0.00	1.963	8.58	1.54	7.9	92.1	0.0	0.42	0.81	0.80	—	3.6	0.004	0.63	0.0	0.04	12.64	0.00	2.184	10.11	0.04	6.2	93.8	0.0	0.46	0.62	0.82	0.81	—	22217	2709	10	22	2	0	0	logfile
✔	8BAH	15948	2023-11-16	2022-10-11	4.13	4.37	4.14	4.2	0.003	0.54	0.0	0.04	10.66	0.00	1.951	2.05	0.00	2.2	97.8	0.0	0.61	0.73	0.72	—	4.2	0.004	0.57	0.0	0.04	12.12	0.00	1.846	11.55	0.00	5.9	94.1	0.0	-0.19	0.70	0.73	0.74	—	13675	855	5	0	4	0	6801	logfile
✘	7VZB	32224	2023-11-14	2021-11-15	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9524	1170	4	0	4	0	0	logfile

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