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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8EFB | 28077 | 2023-11-14 | 2022-09-08 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8947 | 1136 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6PP7 | 20421 | 2023-11-21 | 2019-07-05 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32499 | 2081 | 13 | 0 | 25 | 0 | 16296 | logfile |
✔ | 5FN4 | 3239 | 2023-11-14 | 2015-11-10 | 4.0 | 4.24 | — | 4.2 | 0.010 | 1.71 | 17.0 | 0.10 | 18.07 | 0.01 | 2.131 | 10.17 | 10.51 | 12.0 | 84.8 | 3.2 | -1.44 | 0.61 | 0.55 | — | 4.1 | 0.004 | 0.89 | 0.0 | 0.05 | 17.23 | 0.01 | 2.157 | 20.48 | 0.57 | 7.4 | 91.9 | 0.6 | -0.37 | 1.73 | 0.69 | 0.79 | — | 9776 | 1250 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7E2Y | 30972 | 2023-11-14 | 2021-02-07 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6987 | 868 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 7D1T | 30547 | 2023-11-13 | 2020-09-15 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52994 | 5312 | 108 | 0 | 196 | 2432 | 0 | logfile |
✔ | 7PDG | 13337 | 2023-11-14 | 2021-08-05 | 4.3 | 4.51 | — | 3.1 | 0.005 | 0.82 | 0.0 | 0.05 | 14.59 | 0.00 | 2.161 | 16.17 | 0.00 | 5.2 | 94.8 | 0.0 | -0.49 | 0.58 | 0.72 | — | 3.1 | 0.003 | 0.73 | 0.0 | 0.04 | 14.74 | 0.00 | 2.173 | 12.63 | 0.00 | 4.3 | 95.7 | 0.0 | 0.21 | 0.88 | 0.58 | 0.72 | — | 7642 | 970 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Po1 | 20406 | 2023-11-13 | 2019-07-03 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53244 | 3407 | 20 | 0 | 18 | 0 | 26717 | logfile |
✔ | 7E8B | 31013 | 2023-11-22 | 2021-03-01 | 4.2 | 3.74 | 4.28 | 3.8 | 0.003 | 0.61 | 0.0 | 0.04 | 14.23 | 0.00 | 2.120 | 15.19 | 0.05 | 7.3 | 92.7 | 0.0 | -1.09 | 0.67 | 0.65 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.05 | 14.51 | 0.01 | 2.108 | 21.99 | 0.05 | 9.2 | 90.8 | 0.0 | -1.45 | 0.58 | 0.68 | 0.68 | — | 36832 | 4580 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5J8V | 8073 | 2023-11-18 | 2016-04-08 | 4.9 | 4.81 | — | 4.7 | 0.024 | 2.67 | 214.0 | 0.16 | 10.17 | 0.01 | 1.145 | 73.68 | 28.71 | 6.2 | 86.5 | 7.3 | 2.50 | 0.71 | 0.67 | — | 4.7 | 0.003 | 0.96 | 4.0 | 0.04 | 9.37 | 0.00 | 2.173 | 6.74 | 0.32 | 9.5 | 88.8 | 1.7 | 0.19 | 0.81 | 0.75 | 0.74 | — | 73616 | 13812 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6R93 | 4767 | 2023-11-18 | 2019-04-02 | 4.0 | 4.29 | — | 4.1 | 0.010 | 1.48 | 2.0 | 0.10 | 29.24 | 0.01 | 1.600 | 2.04 | 0.00 | 2.5 | 97.0 | 0.5 | 0.30 | 0.78 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22961 | 775 | 10 | 290 | 0 | 0 | 10123 | logfile |
✘ | 7DR2 | 30823 | 2023-11-20 | 2020-12-25 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 89952 | 8588 | 76 | 0 | 438 | 0 | 0 | logfile |
✔ | 6VFL | 21186 | 2023-11-16 | 2020-01-05 | 4.14 | 4.24 | 4.09 | 4.2 | 0.020 | 1.69 | 0.0 | 0.10 | 10.16 | 0.01 | 2.247 | 1.36 | 0.20 | 1.4 | 98.6 | 0.0 | 0.90 | 0.77 | 0.84 | — | 4.2 | 0.007 | 0.83 | 0.0 | 0.05 | 13.18 | 0.00 | 2.054 | 11.25 | 0.00 | 4.1 | 95.9 | 0.0 | 0.15 | 0.85 | 0.77 | 0.85 | — | 14925 | 1710 | 42 | 0 | 102 | 0 | 0 | logfile |
✔ | 7NPU | 12521 | 2023-11-17 | 2021-02-28 | 4.48 | 4.74 | 4.43 | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 11.87 | 0.01 | 2.086 | 1.37 | 0.37 | 1.8 | 98.1 | 0.1 | -0.61 | 0.66 | 0.68 | — | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 12.55 | 0.00 | 1.902 | 8.02 | 0.00 | 2.8 | 97.2 | 0.0 | 1.44 | 3.28 | 0.69 | 0.76 | — | 126727 | 8230 | 24 | 0 | 0 | 0 | 64397 | logfile |
✔ | 7RZ9 | 24755 | 2023-11-19 | 2021-08-27 | 4.15 | 3.58 | — | 4.1 | 0.007 | 0.98 | 0.0 | 0.05 | 10.41 | 0.01 | 2.264 | 3.46 | 0.26 | 5.6 | 94.4 | 0.0 | -5.15 | 0.68 | 0.80 | — | 4.1 | 0.003 | 0.60 | 0.0 | 0.04 | 13.04 | 0.00 | 2.174 | 8.74 | 0.00 | 3.5 | 96.5 | 0.0 | 0.04 | 1.16 | 0.69 | 0.78 | — | 27934 | 3550 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oFJ | 20047 | 2023-11-15 | 2019-03-30 | 4.5 | 5.60 | 3.27 | 7.8 | 0.007 | 0.96 | 0.0 | 0.05 | 15.74 | 0.01 | 2.135 | 3.69 | 0.00 | 7.1 | 92.9 | 0.0 | -4.36 | 0.48 | 0.33 | — | 7.8 | 0.002 | 0.58 | 0.0 | 0.04 | 14.03 | 0.00 | 2.002 | 10.00 | 0.00 | 8.7 | 91.3 | 0.0 | -1.93 | 1.22 | 0.56 | 0.54 | — | 10310 | 650 | 2 | 0 | 0 | 0 | 5142 | logfile |
✔ | 8G6K | 29772 | 2023-11-14 | 2023-02-15 | 3.6 | 3.71 | 3.52 | 3.4 | 0.002 | 0.48 | 0.0 | 0.04 | 4.19 | 0.00 | 2.523 | 0.20 | 0.00 | 2.7 | 97.3 | 0.0 | 1.65 | 0.54 | 0.71 | — | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 4.50 | 0.00 | 2.284 | 2.64 | 0.00 | 6.7 | 93.3 | 0.0 | 0.05 | 1.47 | 0.54 | 0.74 | — | 9388 | 1379 | 7 | 0 | 0 | 0 | 2576 | logfile |
✔ | 7F24 | 31427 | 2023-11-15 | 2021-06-10 | 4.16 | 4.05 | — | 4.0 | 0.009 | 1.05 | 0.0 | 0.06 | 15.53 | 0.01 | 2.076 | 24.77 | 0.65 | 5.1 | 94.8 | 0.1 | -2.40 | 0.69 | 0.76 | — | 4.0 | 0.003 | 0.72 | 0.0 | 0.05 | 14.76 | 0.00 | 2.180 | 18.15 | 0.26 | 3.8 | 96.2 | 0.0 | 0.02 | 1.38 | 0.69 | 0.75 | — | 7165 | 900 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7S7B | 24882 | 2023-11-18 | 2021-09-15 | 4.06 | 3.82 | — | 3.6 | 0.004 | 0.46 | 0.0 | 0.04 | 10.74 | 0.00 | 1.963 | 8.58 | 1.54 | 7.9 | 92.1 | 0.0 | 0.42 | 0.81 | 0.80 | — | 3.6 | 0.004 | 0.63 | 0.0 | 0.04 | 12.64 | 0.00 | 2.184 | 10.11 | 0.04 | 6.2 | 93.8 | 0.0 | 0.46 | 0.62 | 0.82 | 0.81 | — | 22217 | 2709 | 10 | 22 | 2 | 0 | 0 | logfile |
✔ | 8BAH | 15948 | 2023-11-16 | 2022-10-11 | 4.13 | 4.37 | 4.14 | 4.2 | 0.003 | 0.54 | 0.0 | 0.04 | 10.66 | 0.00 | 1.951 | 2.05 | 0.00 | 2.2 | 97.8 | 0.0 | 0.61 | 0.73 | 0.72 | — | 4.2 | 0.004 | 0.57 | 0.0 | 0.04 | 12.12 | 0.00 | 1.846 | 11.55 | 0.00 | 5.9 | 94.1 | 0.0 | -0.19 | 0.70 | 0.73 | 0.74 | — | 13675 | 855 | 5 | 0 | 4 | 0 | 6801 | logfile |
✘ | 7VZB | 32224 | 2023-11-14 | 2021-11-15 | 3.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9524 | 1170 | 4 | 0 | 4 | 0 | 0 | logfile |