Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7VZG	32228	2023-04-26	2021-11-16	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22458	2402	25	0	119	6	0	logfile
✔	7N64	24193	2023-04-20	2021-06-07	4.2	3.94	—	3.9	0.009	1.06	0.0	0.06	15.21	0.01	2.157	36.86	1.78	20.8	78.9	0.3	-3.80	0.65	0.71	—	3.9	0.005	0.83	0.0	0.05	13.92	0.01	2.089	23.18	0.13	14.5	85.5	0.0	-2.77	0.52	0.64	0.69	—	7189	906	7	0	7	0	0	logfile
✔	7P5J	13200	2023-04-20	2021-07-14	4.0	3.72	3.98	4.0	0.004	0.72	0.0	0.04	15.50	0.01	2.264	8.81	0.60	2.5	97.5	0.0	2.65	0.51	0.76	—	4.0	0.003	0.79	0.0	0.04	17.82	0.00	2.172	11.51	0.45	1.8	98.2	0.0	3.11	0.48	0.53	0.77	—	6250	798	6	0	8	0	0	logfile
✘	7VZR	32229	2023-04-25	2021-11-16	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21354	2266	22	0	117	6	0	logfile
✔	6DMo	7964	2023-04-20	2018-06-05	4.1	4.16	—	4.1	0.008	1.27	0.0	0.06	13.73	0.01	1.764	8.90	2.78	11.1	88.6	0.3	-4.11	0.55	0.64	—	4.1	0.003	0.83	0.0	0.05	13.68	0.00	2.175	14.88	0.00	9.1	90.9	0.0	-0.52	2.16	0.58	0.71	—	7853	982	3	0	7	0	0	logfile
✘	7NKZ	12451	2023-04-20	2021-02-19	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6424	792	4	0	5	42	0	logfile
✔	7BZW	30261	2023-04-21	2020-04-28	4.6	7.66	4.73	6.0	0.003	0.82	0.0	0.05	15.82	0.01	2.176	28.88	0.00	19.4	80.6	0.0	-5.59	0.85	0.67	—	6.5	0.003	0.82	0.0	0.05	14.68	0.01	1.922	20.13	0.00	19.3	80.7	0.0	-2.79	1.80	0.93	0.86	—	9756	1212	12	0	0	0	0	logfile
✔	6GH6	0002	2023-04-28	2018-05-04	4.1	4.20	—	3.9	0.004	0.91	0.0	0.05	14.40	0.00	1.934	15.53	0.38	9.7	89.3	0.9	-3.61	0.85	0.74	—	3.9	0.005	0.81	0.0	0.04	15.96	0.00	1.965	12.53	0.11	9.9	89.5	0.6	-1.09	1.78	0.87	0.81	—	28051	3482	8	96	51	0	0	logfile
✔	6B19	7031	2023-04-20	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	16.18	0.00	19.4	80.5	0.1	-5.73	0.74	0.63	—	4.4	0.003	0.84	0.0	0.04	12.73	0.00	1.937	28.68	0.00	25.4	74.6	0.0	-4.85	1.32	0.78	0.68	—	5699	907	4	38	0	0	409	logfile
✘	7N62	24192	2023-04-20	2021-06-07	4.0	3.42	—	3.9	0.006	0.82	0.0	0.05	13.98	0.01	2.203	21.20	0.00	14.9	85.1	0.0	-2.74	0.73	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5613	712	4	0	5	0	0	logfile
✔	7W6M	32329	2023-04-29	2021-12-02	4.7	4.96	4.72	4.7	0.005	0.83	0.0	0.06	13.62	0.00	2.107	9.16	0.00	4.4	95.6	0.0	-0.63	0.85	0.80	—	4.7	0.004	0.74	0.0	0.05	13.62	0.00	2.036	13.13	0.00	6.2	93.8	0.0	-0.91	0.37	0.85	0.82	—	30756	3672	51	0	204	0	0	logfile
✔	6V8P	21108	2023-04-23	2019-12-11	4.1	4.54	—	4.2	0.005	0.76	0.0	0.81	11.30	0.00	2.210	3.96	0.29	6.7	93.2	0.0	-2.58	0.82	0.79	—	4.2	0.009	1.50	0.0	0.26	11.97	0.01	2.061	12.84	0.00	10.4	89.6	0.0	-0.79	1.64	0.85	0.84	—	14548	2117	6	0	1	0	0	logfile
✔	6PVM	20493	2023-04-25	2019-07-21	4.5	4.24	—	4.3	0.006	1.18	0.0	0.06	12.60	0.01	2.154	6.75	0.87	15.6	84.1	0.3	-6.13	0.49	0.74	—	4.3	0.003	0.88	0.0	0.04	13.70	0.00	2.121	13.51	0.00	13.6	86.1	0.3	-2.67	1.03	0.49	0.74	—	21006	2576	6	0	2	0	0	logfile
✔	7oTi	13060	2023-04-21	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.86	0.0	0.04	14.40	0.00	2.119	20.52	0.00	7.2	92.3	0.5	-1.27	1.77	0.52	0.51	—	9171	1182	1	0	0	0	0	logfile
✘	7F73	31484	2023-04-20	2021-06-27	4.0	4.29	3.95	4.3	0.007	1.07	0.0	0.06	15.26	0.00	2.247	11.96	4.10	3.1	96.9	0.0	0.17	0.57	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4934	586	2	0	0	0	0	logfile
✔	7ML1	23905	2023-04-22	2021-04-27	4.0	4.59	—	2.6	0.005	0.66	0.0	0.04	16.62	0.00	1.767	25.40	12.14	8.8	91.1	0.1	-1.89	0.65	0.57	—	2.8	0.003	0.67	0.0	0.04	16.63	0.00	2.014	19.24	0.31	7.6	92.4	0.1	-0.93	0.64	0.84	0.79	—	64538	8076	43	114	142	0	0	logfile
✘	7VZB	32224	2023-04-21	2021-11-15	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9524	1170	4	0	4	0	0	logfile
✔	6ZY7	11553	2023-04-25	2020-07-30	4.64	8.26	4.84	4.6	0.009	1.01	0.0	0.08	12.28	0.01	2.218	6.54	0.00	1.7	98.3	0.0	-1.71	0.93	0.83	—	4.6	0.002	0.57	0.0	0.04	13.75	0.00	2.166	14.32	0.00	2.3	97.7	0.0	-0.31	2.28	0.92	0.71	—	19979	2319	10	60	4	0	0	logfile
✔	6UGF	20763	2023-04-23	2019-09-26	4.2	4.51	—	4.2	0.008	1.11	0.0	0.05	13.93	0.01	2.046	4.71	0.30	6.0	93.9	0.1	-4.55	0.80	0.72	—	4.3	0.003	0.61	0.0	0.04	13.25	0.00	1.877	8.62	0.00	4.7	95.3	0.0	-0.44	0.62	0.84	0.82	—	13874	1862	12	0	9	0	0	logfile
✘	6XZD	10659	2023-04-22	2020-02-04	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile

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