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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7XT9 | 33443 | 2024-03-16 | 2022-05-16 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14875 | 927 | 4 | 0 | 7 | 0 | 7351 | logfile |
✔ | 5ZBo | 6746 | 2024-03-18 | 2018-02-12 | 4.12 | 4.69 | — | 4.8 | 0.001 | 0.38 | 0.0 | 0.04 | 15.92 | 0.00 | 2.148 | 1.93 | 0.49 | 11.1 | 86.2 | 2.7 | -4.88 | 0.71 | 0.60 | — | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 13.32 | 0.00 | 2.104 | 19.31 | 0.00 | 5.9 | 94.1 | 0.0 | -2.51 | 2.96 | 0.73 | 0.77 | — | 89100 | 10860 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7C2E | 30274 | 2024-03-11 | 2020-05-07 | 4.2 | 4.27 | — | 4.2 | 0.004 | 0.80 | 0.0 | 0.05 | 9.29 | 0.01 | 2.071 | 4.42 | 0.00 | 4.9 | 95.1 | 0.0 | -3.36 | 0.63 | 0.67 | — | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 12.44 | 0.00 | 2.151 | 17.10 | 0.00 | 5.9 | 94.1 | 0.0 | -0.61 | 2.64 | 0.65 | 0.72 | — | 8828 | 1094 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7CGN | 30358 | 2024-03-16 | 2020-07-01 | 4.3 | 4.32 | — | 4.2 | 0.006 | 1.12 | 0.0 | 0.06 | 16.92 | 0.01 | 2.225 | 7.81 | 6.36 | 9.4 | 89.8 | 0.7 | -5.60 | 0.68 | 0.76 | — | 4.2 | 0.004 | 0.78 | 0.0 | 0.05 | 14.54 | 0.00 | 2.039 | 14.07 | 0.06 | 9.5 | 90.3 | 0.2 | -1.45 | 1.78 | 0.69 | 0.78 | — | 15854 | 2092 | 14 | 0 | 2 | 0 | 0 | logfile |
✔ | 8A06 | 15051 | 2024-03-10 | 2022-05-26 | 4.0 | 3.63 | 3.78 | 3.8 | 0.003 | 0.56 | 0.0 | 0.05 | 13.75 | 0.00 | 2.201 | 6.79 | 0.73 | 2.8 | 97.2 | 0.0 | -0.86 | 0.27 | 0.78 | — | 3.7 | 0.003 | 0.61 | 0.0 | 0.05 | 17.11 | 0.00 | 2.273 | 4.67 | 8.76 | 4.1 | 95.9 | 0.0 | -1.52 | 0.41 | 0.26 | 0.79 | — | 1185 | 147 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZDZ | 14678 | 2024-03-15 | 2022-03-30 | 4.3 | 4.37 | 4.35 | 4.3 | 0.003 | 0.86 | 0.0 | 0.05 | 15.05 | 0.00 | 2.192 | 12.57 | 0.35 | 11.1 | 88.6 | 0.3 | -1.61 | 0.64 | 0.70 | — | 4.3 | 0.003 | 0.75 | 0.0 | 0.05 | 14.71 | 0.00 | 2.205 | 14.26 | 0.00 | 12.8 | 87.0 | 0.2 | -1.92 | 1.78 | 0.64 | 0.72 | — | 10369 | 1292 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 7XTA | 33444 | 2024-03-17 | 2022-05-16 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17478 | 1115 | 5 | 0 | 1 | 0 | 8707 | logfile |
✘ | 8BX5 | 16308 | 2024-03-15 | 2022-12-07 | 4.2 | 4.41 | 4.00 | 4.3 | 0.003 | 0.78 | 1.0 | 0.06 | 14.22 | 0.01 | 2.218 | 14.11 | 0.63 | 3.9 | 96.1 | 0.0 | -0.69 | 0.60 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12527 | 1630 | 13 | 0 | 4 | 4 | 0 | logfile |
✔ | 6PW9 | 20501 | 2024-03-11 | 2019-07-22 | 4.03 | 4.12 | — | 4.1 | 0.007 | 1.23 | 0.0 | 0.24 | 15.09 | 0.01 | 1.781 | 6.70 | 1.81 | 4.4 | 95.6 | 0.0 | -4.47 | 0.71 | 0.70 | — | 4.1 | 0.003 | 0.82 | 0.0 | 0.05 | 14.13 | 0.00 | 2.226 | 12.89 | 0.00 | 3.9 | 96.1 | 0.0 | -1.23 | 2.49 | 0.73 | 0.74 | — | 8836 | 1075 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2024-03-15 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.004 | 0.91 | 0.0 | 0.05 | 12.88 | 0.01 | 2.123 | 26.89 | 0.14 | 19.3 | 80.6 | 0.1 | -3.97 | 1.15 | 0.86 | 0.78 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XPE | 22286 | 2024-03-10 | 2020-07-08 | 4.1 | 4.23 | — | 4.2 | 0.006 | 0.82 | 0.0 | 0.04 | 14.30 | 0.00 | 1.492 | 20.11 | 2.08 | 10.6 | 88.1 | 1.3 | -5.36 | 0.60 | 0.84 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 13.33 | 0.00 | 1.829 | 11.38 | 0.00 | 5.5 | 94.5 | 0.0 | -0.21 | 2.63 | 0.61 | 0.82 | — | 4292 | 554 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 7SLP | 25197 | 2024-03-10 | 2021-10-24 | 4.1 | 4.19 | — | 4.2 | 0.008 | 1.22 | 1.0 | 0.07 | 19.40 | 0.01 | 2.221 | 7.09 | 1.77 | 4.2 | 95.3 | 0.5 | -3.76 | 0.62 | 0.56 | — | 4.1 | 0.002 | 0.63 | 0.0 | 0.04 | 17.72 | 0.00 | 2.200 | 9.52 | 0.00 | 4.6 | 95.4 | 0.0 | 0.09 | 1.46 | 0.70 | 0.70 | — | 5176 | 561 | 4 | 37 | 0 | 0 | 0 | logfile |
✔ | 6MU1 | 9243 | 2024-03-25 | 2018-10-22 | 4.1 | 4.75 | — | 6.9 | 0.013 | 2.22 | 146.0 | 0.16 | 14.97 | 0.01 | 1.066 | 78.96 | 16.69 | 12.1 | 85.0 | 2.9 | -0.62 | 0.71 | 0.66 | — | 6.9 | 0.003 | 0.84 | 0.0 | 0.05 | 12.22 | 0.00 | 2.148 | 17.52 | 0.03 | 11.2 | 88.2 | 0.5 | -0.70 | 1.02 | 0.71 | 0.68 | — | 50164 | 8596 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7W0F | 32241 | 2024-03-16 | 2021-11-18 | 4.55 | 8.43 | — | 7.5 | 0.003 | 0.64 | 1.0 | 0.04 | 17.27 | 0.00 | 1.356 | 21.15 | 1.19 | 4.4 | 94.7 | 0.8 | -0.94 | 0.71 | 0.38 | — | 7.3 | 0.003 | 0.71 | 0.0 | 0.04 | 17.30 | 0.00 | 2.139 | 24.93 | 0.07 | 6.2 | 93.7 | 0.1 | -1.01 | 1.51 | 0.87 | 0.72 | — | 14097 | 1492 | 6 | 94 | 0 | 0 | 0 | logfile |
✔ | 6E11 | 8952 | 2024-03-11 | 2018-07-08 | 4.23 | 4.35 | — | 4.2 | 0.007 | 1.11 | 6.0 | 0.06 | 10.08 | 0.01 | 1.079 | 10.29 | 0.49 | 7.9 | 91.8 | 0.3 | -4.77 | 0.79 | 0.73 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 12.83 | 0.00 | 2.073 | 13.76 | 0.00 | 7.2 | 92.7 | 0.1 | -1.09 | 1.06 | 0.81 | 0.79 | — | 57401 | 6820 | 34 | 0 | 373 | 0 | 0 | logfile |
✔ | 7VWY | 32165 | 2024-03-22 | 2021-11-12 | 4.57 | 3.68 | — | 3.8 | 0.006 | 0.94 | 0.0 | 0.05 | 18.49 | 0.01 | 2.039 | 12.27 | 0.86 | 7.9 | 91.9 | 0.2 | -4.94 | 0.72 | 0.69 | — | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 17.62 | 0.00 | 1.928 | 13.67 | 0.06 | 7.7 | 92.2 | 0.0 | -2.32 | 1.44 | 0.74 | 0.71 | — | 34628 | 4061 | 10 | 129 | 3 | 0 | 0 | logfile |
✔ | 6NT7 | 0504 | 2024-03-10 | 2019-01-28 | 4.0 | 4.27 | — | 4.1 | 0.008 | 0.90 | 0.0 | 0.05 | 14.87 | 0.01 | 2.238 | 5.64 | 0.00 | 6.2 | 93.8 | 0.0 | -3.29 | 0.75 | 0.85 | — | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 16.79 | 0.00 | 2.211 | 8.78 | 2.54 | 3.8 | 96.2 | 0.0 | 1.07 | 1.18 | 0.75 | 0.85 | — | 4729 | 588 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7SQT | 25394 | 2024-03-10 | 2021-11-06 | 4.0 | 7.13 | 4.01 | 3.5 | 0.010 | 0.70 | 0.0 | 0.05 | 15.78 | 0.01 | 0.902 | 2.31 | 1.25 | 2.5 | 97.5 | 0.0 | 1.39 | 0.94 | 0.84 | — | 3.4 | 0.003 | 0.76 | 0.0 | 0.04 | 15.77 | 0.00 | 2.133 | 10.60 | 0.60 | 1.6 | 98.4 | 0.0 | 1.64 | 3.02 | 0.93 | 0.86 | — | 107136 | 13752 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JD8 | 6640 | 2024-03-15 | 2016-05-01 | 4.43 | 4.58 | — | 4.4 | 0.015 | 1.56 | 5.0 | 0.13 | 18.26 | 0.02 | 1.335 | 78.13 | 11.82 | 11.9 | 79.7 | 8.4 | -3.27 | 0.54 | 0.62 | — | 4.4 | 0.004 | 0.91 | 0.0 | 0.05 | 12.11 | 0.00 | 2.055 | 19.37 | 0.00 | 8.3 | 90.7 | 1.0 | -0.86 | 1.17 | 0.57 | 0.73 | — | 8050 | 1133 | 7 | 0 | 25 | 0 | 0 | logfile |
✔ | 7TK0 | 25948 | 2024-03-18 | 2022-01-17 | 4.4 | 6.63 | 4.39 | 4.1 | 0.019 | 2.21 | 0.0 | 0.00 | 6.55 | 0.01 | 2.394 | 0.08 | 0.00 | 3.9 | 94.5 | 1.5 | -0.40 | 0.58 | 0.62 | — | 4.1 | 0.003 | 0.80 | 0.0 | 0.00 | 5.24 | 0.00 | 2.105 | 7.94 | 0.00 | 8.9 | 90.9 | 0.3 | -0.45 | 0.81 | 0.83 | 0.81 | — | 20220 | 5054 | 27 | 0 | 0 | 0 | 0 | logfile |