Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ENJ	31211	2022-12-12	2021-04-17	4.4	4.62	—	4.0	0.011	1.18	16.0	0.07	15.29	0.01	2.211	7.87	1.23	5.7	93.7	0.6	-2.67	0.75	0.49	—	4.1	0.003	0.67	0.0	0.04	14.09	0.00	2.106	12.63	0.02	5.0	94.9	0.1	1.41	0.72	0.81	0.66	—	57971	7340	27	0	21	0	0	logfile
✔	7M2Y	23637	2022-12-14	2021-03-17	4.03	4.58	3.93	4.4	0.022	1.80	0.0	0.11	10.99	0.01	1.961	4.31	0.05	2.2	97.6	0.3	0.03	0.52	0.71	—	4.4	0.004	0.76	0.0	0.04	13.21	0.00	2.167	20.49	0.10	5.6	94.2	0.2	-0.32	1.80	0.52	0.76	—	18560	2278	7	2	0	0	0	logfile
✔	7BK0	12195	2022-12-19	2021-01-14	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57536	7411	34	0	0	0	0	logfile
✔	7JQQ	22441	2022-12-16	2020-08-11	4.1	4.43	—	4.3	0.004	0.88	0.0	0.04	23.12	0.01	1.379	26.31	0.00	9.7	90.3	0.0	-2.31	0.35	0.57	—	4.3	0.005	0.92	0.0	0.05	23.22	0.01	1.853	31.60	0.00	12.8	87.1	0.1	-2.68	0.50	0.35	0.60	—	28416	1635	15	705	6	0	0	logfile
✔	7AKD	11812	2022-12-15	2020-09-30	4.0	3.98	—	4.0	0.003	0.64	0.0	0.05	13.02	0.00	2.126	2.92	0.21	2.7	97.3	0.0	-1.66	0.74	0.77	—	4.0	0.004	0.66	0.0	0.05	14.69	0.00	2.122	5.85	0.31	4.3	95.7	0.0	-0.37	1.24	0.75	0.79	—	27358	3404	29	0	79	0	0	logfile
✔	7NVW	12615	2022-12-15	2021-03-16	4.3	4.32	4.26	4.2	0.002	0.45	0.0	0.04	15.45	0.00	1.971	7.13	0.00	4.4	95.6	0.0	0.80	0.71	0.66	—	4.2	0.004	0.73	0.0	0.04	15.78	0.00	2.097	18.82	0.04	5.6	94.4	0.0	-0.62	1.05	0.73	0.69	—	23647	2814	17	42	35	0	0	logfile
✔	7NVR	12610	2022-12-17	2021-03-15	4.5	4.38	4.40	3.5	0.003	0.55	0.0	0.04	15.01	0.00	1.807	8.82	0.01	3.9	96.0	0.0	0.72	0.75	0.57	—	3.5	0.003	0.63	0.0	0.04	15.27	0.00	1.962	14.53	0.01	4.2	95.8	0.0	0.44	1.67	0.73	0.54	—	96126	11548	71	128	157	0	0	logfile
✔	6ZY6	11551	2022-12-13	2020-07-30	4.1	4.75	4.09	4.6	0.010	1.07	2.0	0.08	13.11	0.01	2.304	5.56	0.00	1.6	98.4	0.0	-0.70	0.83	0.77	—	4.6	0.002	0.61	0.0	0.04	16.29	0.00	2.145	9.75	0.00	3.4	96.6	0.0	0.20	1.90	0.86	0.81	—	13504	1520	8	60	2	0	0	logfile
✔	6ZY7	11553	2022-12-14	2020-07-30	4.64	8.26	4.84	4.6	0.009	1.01	0.0	0.08	12.28	0.01	2.218	6.62	0.00	1.7	98.3	0.0	-1.71	0.93	0.83	—	4.6	0.003	0.63	0.0	0.04	13.94	0.00	2.117	20.08	0.00	3.1	96.9	0.0	-0.62	2.30	0.94	0.82	—	19979	2319	10	60	4	0	0	logfile
✔	7BiN	12192	2022-12-19	2021-01-12	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81721	10887	56	0	0	0	0	logfile
✔	6ZGD	11202	2022-12-12	2020-06-18	4.1	4.30	3.99	4.2	0.006	0.62	0.0	0.05	10.93	0.01	2.137	10.94	0.61	4.6	95.4	0.0	-1.11	0.74	0.82	—	4.2	0.003	0.61	0.0	0.05	11.97	0.00	2.182	9.05	0.12	2.4	97.6	0.0	-0.46	1.00	0.71	0.81	—	10175	1440	5	0	0	0	0	logfile
✔	7EGA	31110	2022-12-16	2021-03-24	4.1	4.55	—	4.1	0.008	1.08	35.0	0.07	16.87	0.01	1.445	18.80	3.89	6.5	93.1	0.4	-3.75	0.60	0.28	—	3.9	0.004	0.71	0.0	0.04	15.57	0.00	1.930	15.63	0.00	5.4	94.5	0.1	-0.50	1.39	0.75	0.55	—	85697	10273	49	170	11	0	0	logfile
✔	7EDX	31075	2022-12-15	2021-03-17	4.5	4.87	—	4.1	0.008	1.09	34.0	0.07	16.62	0.01	1.497	21.08	3.31	6.1	93.4	0.5	-3.70	0.67	0.35	—	3.7	0.005	0.77	0.0	0.04	15.45	0.00	1.970	18.29	0.00	6.2	93.7	0.1	-0.63	0.97	0.78	0.59	—	81790	9837	46	154	10	0	0	logfile
✔	7LJF	23392	2022-12-13	2021-01-29	4.0	4.34	—	4.2	0.003	0.62	0.0	0.04	13.74	0.00	1.987	14.43	0.41	3.4	96.6	0.0	0.00	0.83	0.80	—	4.2	0.006	0.77	0.0	0.05	15.72	0.00	1.752	24.09	0.41	6.1	93.9	0.0	-0.76	0.36	0.83	0.82	—	15742	2007	9	0	6	0	0	logfile
✔	7BL6	12219	2022-12-16	2021-01-18	4.0	7.11	—	4.0	0.002	0.42	0.0	0.03	13.17	0.00	2.117	11.03	0.07	4.7	95.3	0.1	-0.28	0.92	0.83	—	4.0	0.005	0.68	0.0	0.04	17.05	0.00	1.923	37.80	0.31	8.5	91.4	0.1	-1.66	3.13	0.94	0.82	—	92769	3600	42	3016	5	27	0	logfile
✔	7LV9	23530	2022-12-11	2021-02-24	4.5	7.82	4.59	4.4	0.003	0.64	0.0	0.04	27.26	0.00	1.334	3.02	0.00	3.2	96.8	0.0	-3.35	0.82	0.66	—	4.4	0.005	0.68	0.0	0.04	29.24	0.00	2.127	22.13	0.00	3.3	96.7	0.0	1.18	1.55	0.90	0.85	—	8238	581	8	190	0	0	0	logfile
✔	7M2W	23635	2022-12-20	2021-03-17	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39366	4827	16	0	4	0	0	logfile
✘	7BL2	12215	2022-12-19	2021-01-18	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✔	7NBX	12262	2022-12-14	2021-01-28	4.8	5.30	4.72	4.9	0.008	1.04	0.0	0.05	15.90	0.01	1.950	12.59	0.00	12.3	87.6	0.1	-4.49	0.76	0.82	—	4.9	0.005	0.69	0.0	0.04	14.27	0.00	1.835	16.83	0.00	12.7	87.3	0.0	-2.53	0.70	0.76	0.81	—	22637	1475	5	0	0	0	11129	logfile
✔	7BNQ	12232	2022-12-12	2021-01-22	4.1	4.35	4.09	4.2	0.005	0.80	0.0	0.05	14.89	0.01	2.293	4.99	0.32	5.4	94.6	0.0	-3.83	0.78	0.86	—	4.2	0.003	0.61	0.0	0.04	14.26	0.00	2.213	9.59	0.00	5.4	94.6	0.0	-1.42	1.21	0.78	0.85	—	11617	1488	5	0	0	0	0	logfile

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