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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6TU7 | 10590 | 2023-02-24 | 2020-01-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 7ZC6 | 14622 | 2023-02-20 | 2022-03-25 | 4.27 | 4.35 | 4.17 | 4.3 | 0.014 | 1.95 | 12.0 | 2.55 | 19.20 | 0.01 | 2.098 | 12.11 | 10.79 | 6.1 | 93.1 | 0.8 | -1.59 | 0.66 | 0.74 | — | 4.3 | 0.020 | 3.91 | 0.0 | 0.76 | 14.97 | 0.00 | 1.087 | 12.35 | 0.00 | 4.2 | 95.8 | 0.0 | -0.82 | 0.73 | 0.68 | 0.77 | — | 11428 | 1513 | 11 | 0 | 12 | 0 | 0 | logfile |
✔ | 3J5R | 5777 | 2023-02-22 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.36 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | 7.3 | 0.004 | 0.91 | 0.0 | 0.04 | 13.17 | 0.00 | 2.141 | 20.76 | 0.00 | 6.8 | 92.9 | 0.4 | 0.29 | 1.77 | 0.67 | 0.53 | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 6V3G | 21036 | 2023-02-26 | 2019-11-25 | 4.0 | 4.39 | — | 4.1 | 0.008 | 1.05 | 0.0 | 0.07 | 10.57 | 0.01 | 2.211 | 13.47 | 2.66 | 5.6 | 94.4 | 0.0 | -2.76 | 0.72 | 0.77 | — | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 12.72 | 0.00 | 2.157 | 14.36 | 0.19 | 3.5 | 96.5 | 0.0 | -0.65 | 0.88 | 0.72 | 0.83 | — | 28520 | 3580 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oPC | 20149 | 2023-02-27 | 2019-04-24 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30015 | 4455 | 13 | 0 | 48 | 0 | 0 | logfile |
✘ | 7BKD | 12210 | 2023-02-25 | 2021-01-15 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24799 | 3177 | 18 | 0 | 26 | 0 | 0 | logfile |
✘ | 6NQ0 | 0477 | 2023-02-19 | 2019-01-18 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1242 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 6XZR | 10666 | 2023-02-25 | 2020-02-05 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 7XQJ | 33398 | 2023-02-19 | 2022-05-07 | 4.0 | 4.56 | 3.73 | 4.2 | 0.007 | 0.84 | 0.0 | 0.05 | 15.98 | 0.01 | 2.401 | 6.40 | 6.01 | 6.5 | 93.5 | 0.0 | -2.82 | 0.78 | 0.85 | — | 4.3 | 0.004 | 0.84 | 0.0 | 0.04 | 15.98 | 0.00 | 2.320 | 10.96 | 0.46 | 4.8 | 95.2 | 0.0 | 0.90 | 0.78 | 0.78 | 0.85 | — | 9960 | 1224 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7W9M | 32370 | 2023-02-21 | 2021-12-10 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14219 | 1710 | 7 | 0 | 18 | 0 | 0 | logfile |
✘ | 6C9A | 7435 | 2023-02-20 | 2018-01-25 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12182 | 1446 | 6 | 0 | 8 | 0 | 0 | logfile |
✔ | 7KVC | 23046 | 2023-02-24 | 2020-11-27 | 4.7 | 4.90 | — | 4.8 | 0.005 | 0.84 | 0.0 | 0.05 | 13.91 | 0.00 | 2.224 | 33.61 | 0.00 | 10.7 | 89.3 | 0.0 | -2.46 | 0.82 | 0.81 | — | 4.8 | 0.004 | 0.76 | 0.0 | 0.04 | 14.05 | 0.01 | 2.222 | 24.53 | 0.00 | 5.6 | 94.4 | 0.0 | -0.15 | 0.55 | 0.81 | 0.79 | — | 21920 | 2660 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R7Y | 4747 | 2023-02-19 | 2019-03-29 | 4.2 | 4.23 | 4.05 | 4.2 | 0.010 | 1.07 | 0.0 | 0.06 | 13.58 | 0.01 | 2.188 | 3.88 | 1.71 | 2.6 | 97.3 | 0.2 | -3.14 | 0.64 | 0.86 | — | 4.2 | 0.004 | 0.64 | 0.0 | 0.04 | 14.13 | 0.00 | 2.200 | 7.07 | 0.00 | 2.8 | 97.0 | 0.2 | 1.52 | 1.09 | 0.65 | 0.85 | — | 10062 | 1254 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6YRK | 10890 | 2023-02-27 | 2020-04-20 | 4.1 | 4.59 | — | 4.0 | 0.014 | 1.85 | 13.0 | 0.12 | 18.90 | 0.01 | 2.473 | 6.64 | 12.77 | 6.4 | 93.2 | 0.5 | -2.49 | 0.68 | 0.44 | — | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 14.01 | 0.00 | 2.124 | 20.91 | 0.00 | 5.0 | 94.9 | 0.1 | -1.13 | 1.88 | 0.85 | 0.68 | — | 15058 | 1937 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 3J5Q | 5776 | 2023-02-22 | 2013-10-28 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18556 | 2448 | 8 | 0 | 44 | 0 | 292 | logfile |
✔ | 6oCE | 20017 | 2023-02-20 | 2019-03-23 | 4.9 | 4.11 | — | 4.0 | 0.006 | 0.73 | 0.0 | 0.04 | 8.07 | 0.01 | 1.868 | 8.56 | 0.00 | 9.9 | 90.1 | 0.0 | -4.37 | 0.45 | 0.60 | — | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 12.78 | 0.01 | 2.268 | 10.55 | 0.00 | 12.4 | 87.6 | 0.0 | -2.55 | 1.79 | 0.46 | 0.62 | — | 11228 | 1378 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DZW | 8941 | 2023-02-18 | 2018-07-05 | 4.3 | 4.31 | 5.22 | 4.9 | 0.004 | 0.86 | 0.0 | 0.09 | 13.51 | 0.01 | 2.052 | 3.87 | 0.36 | 3.2 | 96.8 | 0.0 | -4.99 | 0.45 | 0.53 | — | 5.0 | 0.003 | 0.73 | 0.0 | 0.04 | 13.45 | 0.00 | 2.178 | 15.02 | 0.12 | 4.6 | 95.4 | 0.0 | -1.34 | 1.76 | 0.48 | 0.60 | — | 7829 | 988 | 6 | 0 | 4 | 0 | 0 | logfile |
✘ | 6NQ2 | 0479 | 2023-02-19 | 2019-01-18 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1242 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7UY8 | 26867 | 2023-02-19 | 2022-05-06 | 4.5 | 8.56 | 4.38 | 4.2 | 0.003 | 0.63 | 1.0 | 0.05 | 14.55 | 0.00 | 2.207 | 8.69 | 0.00 | 6.1 | 93.9 | 0.0 | -0.66 | 0.79 | 0.60 | — | 4.4 | 0.003 | 0.66 | 0.0 | 0.04 | 14.44 | 0.00 | 2.152 | 20.87 | 0.00 | 5.8 | 94.1 | 0.1 | -0.35 | 1.42 | 0.92 | 0.85 | — | 9552 | 1161 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6U1N | 20612 | 2023-02-17 | 2019-08-16 | 4.0 | 4.36 | — | 4.0 | 0.008 | 0.81 | 0.0 | 0.04 | 12.09 | 0.00 | 2.198 | 17.99 | 0.00 | 7.8 | 92.2 | 0.0 | -4.67 | 0.84 | 0.82 | — | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 13.20 | 0.00 | 2.160 | 12.27 | 0.00 | 4.5 | 95.5 | 0.0 | -0.54 | 0.51 | 0.84 | 0.81 | — | 5863 | 864 | 5 | 0 | 1 | 0 | 0 | logfile |