Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NJ7	12375	2023-11-20	2021-02-16	4.82	5.23	—	4.8	0.004	0.73	1.0	0.04	13.69	0.01	1.907	8.72	0.19	4.3	95.7	0.0	-0.72	0.74	0.46	—	4.9	0.003	0.63	0.0	0.04	13.62	0.00	1.843	18.66	0.00	5.1	94.9	0.0	-0.81	2.32	0.82	0.64	—	28818	1797	6	23	0	0	13868	logfile
✘	7WU5	32820	2023-11-14	2022-02-05	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6948	888	4	0	2	0	0	logfile
✔	7F46	31444	2023-11-14	2021-06-17	4.79	5.15	—	3.3	0.006	0.84	0.0	0.05	13.38	0.01	2.218	12.18	0.00	8.9	91.1	0.0	-2.90	0.77	0.60	—	4.4	0.003	0.77	0.0	0.05	12.89	0.01	2.142	16.52	0.00	6.3	93.7	0.0	-2.00	1.56	0.79	0.62	—	6564	842	6	0	2	0	0	logfile
✘	6JZo	9898	2023-11-18	2019-05-03	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21405	2657	8	0	12	0	0	logfile
✘	6TF9	10491	2023-11-16	2019-11-13	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✘	6Hio	0226	2023-11-16	2018-08-30	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16085	1925	20	0	30	0	0	logfile
✘	8HKU	34860	2023-11-13	2022-11-28	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✘	6AEi	9615	2023-11-18	2018-08-05	2.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21142	2568	8	0	13	0	0	logfile
✔	7WD8	32434	2023-11-13	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	8.80	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.4	0.005	0.84	0.0	0.05	12.81	0.01	2.128	19.11	0.00	7.2	92.6	0.2	-0.68	1.67	0.64	0.68	—	4029	524	4	0	0	0	0	logfile
✘	7DXH	30909	2023-11-17	2021-01-18	3.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20054	2150	31	0	69	0	0	logfile
✔	7Y0o	33551	2023-11-13	2022-06-05	4.4	3.19	4.10	3.0	0.004	0.93	0.0	0.06	15.07	0.01	2.254	9.72	0.00	9.8	90.1	0.2	-3.24	0.65	0.55	—	3.0	0.003	0.70	0.0	0.05	15.01	0.00	2.162	16.60	0.00	10.5	89.5	0.0	-2.96	0.45	0.66	0.56	—	4185	541	6	0	0	18	0	logfile
✔	8HPL	34932	2023-11-15	2022-12-12	4.29	4.66	4.34	4.3	0.012	1.77	1.0	0.14	12.37	0.01	2.269	5.50	0.00	8.9	91.1	0.0	-2.47	0.70	0.80	—	4.4	0.003	0.68	0.0	0.04	11.88	0.00	2.106	10.12	0.00	4.5	95.5	0.0	-0.18	0.77	0.70	0.80	—	12013	1757	8	0	4	0	0	logfile
✔	7NK2	12429	2023-11-20	2021-02-17	4.84	4.93	—	4.8	0.004	0.73	2.0	0.05	13.61	0.01	1.907	8.81	0.32	4.3	95.7	0.0	-0.71	0.61	0.43	—	4.8	0.003	0.66	0.0	0.04	13.83	0.00	1.914	17.59	0.00	5.7	94.3	0.0	-0.91	4.61	0.73	0.68	—	28776	1794	6	23	0	0	13868	logfile
✔	5LiJ	4054	2023-11-13	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.17	0.0	0.04	10.44	0.00	2.149	15.78	0.00	35.3	64.7	0.0	-5.53	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✘	6DG8	7883	2023-11-16	2018-05-17	3.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16715	1955	24	0	40	0	0	logfile
✔	6R23	4708	2023-11-13	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.61	0.0	0.04	16.41	0.00	2.466	11.77	0.00	9.0	91.0	0.0	-0.07	3.42	0.60	0.74	—	1518	182	2	0	0	0	0	logfile
✔	7NKi	12440	2023-11-20	2021-02-18	4.67	4.96	—	4.6	0.004	0.67	0.0	0.04	13.49	0.01	1.908	8.85	0.00	4.0	96.0	0.0	-0.64	0.67	0.41	—	4.6	0.003	0.64	0.0	0.04	14.03	0.00	1.892	18.40	0.00	4.7	95.3	0.0	-0.65	2.33	0.79	0.63	—	28775	1794	6	23	0	0	13868	logfile
✔	7WLC	32581	2023-11-13	2022-01-13	4.0	4.24	—	4.1	0.003	0.70	0.0	0.04	13.71	0.00	2.198	15.62	0.00	6.1	93.9	0.0	-1.35	0.71	0.77	—	4.2	0.004	0.80	0.0	0.05	16.00	0.00	2.188	18.56	0.56	8.3	91.7	0.0	-1.72	0.54	0.72	0.78	—	3307	430	3	0	0	0	0	logfile
✔	7MFE	23814	2023-11-14	2021-04-09	4.07	3.82	—	3.8	0.002	0.59	0.0	0.04	15.26	0.00	1.387	18.00	0.41	6.6	93.4	0.0	-2.56	0.63	0.64	—	3.8	0.003	0.69	0.0	0.04	15.41	0.00	2.119	16.38	0.00	5.6	94.4	0.0	-1.25	0.57	0.62	0.63	—	6844	859	4	0	2	0	0	logfile
✘	6MN7	9166	2023-11-18	2018-10-01	4.8	5.01	—	5.0	0.016	2.23	12.0	0.12	10.62	0.02	1.395	35.74	0.57	8.6	89.4	2.0	-2.34	0.50	0.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21447	2418	66	0	192	0	0	logfile

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