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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6DMo | 7964 | 2022-07-03 | 2018-06-05 | 4.1 | 4.16 | — | 4.1 | 0.008 | 1.26 | 0.0 | 0.06 | 13.66 | 0.01 | 1.764 | 8.97 | 2.78 | 11.1 | 88.6 | 0.3 | -4.11 | 0.55 | 0.64 | — | 4.1 | 0.004 | 0.87 | 0.0 | 0.05 | 13.51 | 0.00 | 2.132 | 16.15 | 0.00 | 10.5 | 89.5 | 0.0 | -0.53 | 1.27 | 0.59 | 0.72 | — | 7853 | 982 | 1 | 0 | 7 | 0 | 0 | logfile |
✘ | 3J5R | 5777 | 2022-07-04 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.60 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 6SFX | 10162 | 2022-07-04 | 2019-08-02 | 4.0 | 3.90 | 3.75 | 3.9 | 0.012 | 1.02 | 1.0 | 0.06 | 16.15 | 0.01 | 0.560 | 24.28 | 0.14 | 7.7 | 92.0 | 0.3 | -4.75 | 0.73 | 0.74 | — | 3.8 | 0.004 | 0.91 | 0.0 | 0.05 | 18.21 | 0.01 | 2.058 | 23.86 | 0.74 | 4.7 | 95.2 | 0.0 | -1.10 | 1.52 | 0.74 | 0.76 | — | 20196 | 2602 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 5KYH | 8298 | 2022-07-07 | 2016-07-21 | 4.0 | 3.99 | — | 4.2 | 0.014 | 1.82 | 0.0 | 0.11 | 11.44 | 0.01 | 1.692 | 34.34 | 3.90 | 2.5 | 96.2 | 1.3 | -0.68 | 0.47 | 0.78 | — | 4.1 | 0.003 | 0.75 | 0.0 | 0.05 | 15.12 | 0.00 | 2.070 | 10.40 | 0.35 | 5.4 | 94.6 | 0.0 | 0.13 | 1.73 | 0.47 | 0.79 | — | 38892 | 5082 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 6B19 | 7031 | 2022-07-03 | 2017-09-18 | 4.5 | 4.61 | — | 4.4 | 0.023 | 1.38 | 0.0 | 0.05 | 6.45 | 0.01 | 2.201 | 16.18 | 0.00 | 19.4 | 80.5 | 0.1 | -5.73 | 0.74 | 0.63 | — | 4.4 | 0.003 | 0.87 | 0.0 | 0.04 | 13.09 | 0.00 | 1.943 | 28.42 | 0.00 | 24.5 | 75.5 | 0.0 | -5.38 | 1.33 | 0.77 | 0.65 | — | 5699 | 907 | 4 | 38 | 0 | 0 | 409 | logfile |
✔ | 6V3G | 21036 | 2022-07-06 | 2019-11-25 | 4.0 | 4.39 | — | 4.1 | 0.008 | 1.05 | 0.0 | 0.07 | 10.57 | 0.01 | 2.211 | 13.54 | 2.66 | 5.6 | 94.4 | 0.0 | -2.76 | 0.72 | 0.77 | — | 4.1 | 0.003 | 0.74 | 0.0 | 0.04 | 12.79 | 0.00 | 2.151 | 15.13 | 0.38 | 3.7 | 96.3 | 0.0 | -0.51 | 0.89 | 0.73 | 0.83 | — | 28520 | 3580 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Y5Y | 6811 | 2022-07-06 | 2017-08-10 | 4.7 | 4.66 | — | 4.6 | 0.027 | 2.87 | 128.0 | 0.17 | 18.51 | 0.03 | 2.246 | 4.76 | 9.44 | 16.3 | 75.1 | 8.6 | -5.44 | 0.70 | 0.77 | — | 4.6 | 0.007 | 1.01 | 0.0 | 0.05 | 15.19 | 0.01 | 2.040 | 19.31 | 0.00 | 10.8 | 88.8 | 0.5 | -1.68 | 1.75 | 0.70 | 0.82 | — | 32159 | 4164 | 15 | 0 | 2 | 0 | 0 | logfile |
✔ | 6HRB | 0258 | 2022-07-03 | 2018-09-26 | 4.0 | 4.20 | 3.96 | 4.0 | 0.008 | 0.96 | 0.0 | 0.05 | 9.28 | 0.01 | 2.186 | 6.75 | 0.26 | 7.2 | 92.8 | 0.0 | -4.97 | 0.74 | 0.84 | — | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 13.56 | 0.00 | 2.132 | 15.05 | 0.18 | 4.3 | 95.7 | 0.0 | -0.40 | 1.27 | 0.74 | 0.84 | — | 10787 | 1447 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6J50 | 0675 | 2022-07-08 | 2019-01-10 | 4.7 | 5.34 | — | 3.4 | 0.009 | 1.21 | 3.0 | 0.07 | 19.05 | 0.01 | 1.789 | 9.58 | 0.77 | 4.3 | 95.0 | 0.7 | -1.67 | 0.74 | 0.56 | — | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 19.34 | 0.00 | 2.005 | 14.25 | 0.00 | 3.6 | 96.3 | 0.1 | 1.02 | 1.74 | 0.85 | 0.77 | — | 47422 | 5061 | 34 | 349 | 10 | 0 | 0 | logfile |
✔ | 6UGF | 20763 | 2022-07-04 | 2019-09-26 | 4.2 | 4.51 | — | 4.2 | 0.008 | 1.11 | 0.0 | 0.05 | 13.93 | 0.01 | 2.046 | 4.71 | 0.30 | 6.0 | 93.9 | 0.1 | -4.55 | 0.80 | 0.72 | — | 4.3 | 0.002 | 0.59 | 0.0 | 0.04 | 13.19 | 0.00 | 1.955 | 7.70 | 0.00 | 4.1 | 95.9 | 0.0 | -0.21 | 0.62 | 0.84 | 0.81 | — | 13874 | 1862 | 12 | 0 | 9 | 0 | 0 | logfile |
✔ | 5KEN | 8242 | 2022-07-04 | 2016-06-09 | 4.3 | 6.36 | 5.67 | 5.5 | 0.014 | 1.81 | 4.0 | 0.19 | 11.62 | 0.01 | 1.282 | 7.95 | 0.22 | 2.9 | 95.6 | 1.4 | 1.45 | 0.82 | 0.71 | — | 5.5 | 0.004 | 0.77 | 0.0 | 0.04 | 13.20 | 0.00 | 1.986 | 29.93 | 0.00 | 8.5 | 90.9 | 0.6 | -1.64 | 2.78 | 0.84 | 0.80 | — | 16913 | 2147 | 20 | 0 | 24 | 0 | 0 | logfile |
✔ | 6GH6 | 0002 | 2022-07-05 | 2018-05-04 | 4.1 | 4.20 | — | 3.9 | 0.004 | 0.91 | 0.0 | 0.05 | 14.40 | 0.00 | 1.934 | 16.38 | 0.38 | 9.7 | 89.3 | 0.9 | -3.61 | 0.85 | 0.74 | — | 3.9 | 0.004 | 0.77 | 0.0 | 0.04 | 16.02 | 0.00 | 1.988 | 11.94 | 0.08 | 9.3 | 90.0 | 0.6 | -0.97 | 1.78 | 0.87 | 0.81 | — | 28051 | 3482 | 8 | 96 | 51 | 0 | 0 | logfile |
✔ | 6HV9 | 0288 | 2022-07-08 | 2018-10-10 | 4.98 | 4.88 | — | 4.5 | 0.012 | 1.86 | 14.0 | 0.09 | 12.25 | 0.01 | 1.447 | 9.27 | 0.49 | 10.9 | 88.8 | 0.3 | -4.02 | 0.78 | 0.66 | — | 4.5 | 0.010 | 0.99 | 1.0 | 0.04 | 13.60 | 0.01 | 1.541 | 18.29 | 0.04 | 8.9 | 91.1 | 0.1 | -1.85 | 1.66 | 0.79 | 0.68 | — | 47617 | 6040 | 18 | 49 | 4 | 0 | 0 | logfile |
✘ | 6HiN | 0225 | 2022-07-04 | 2018-08-30 | 4.1 | 4.24 | — | 4.2 | 0.009 | 1.15 | 0.0 | 0.07 | 11.82 | 0.01 | 1.347 | 6.61 | 0.32 | 1.5 | 98.5 | 0.0 | -4.98 | 0.81 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14220 | 1675 | 10 | 0 | 30 | 0 | 0 | logfile |
✘ | 6Q0J | 20550 | 2022-07-03 | 2019-08-01 | 4.9 | 4.69 | — | 4.1 | 0.012 | 1.51 | 3.0 | 0.09 | 7.93 | 0.00 | 1.185 | 2.10 | 0.00 | 5.4 | 93.3 | 1.3 | -2.84 | 0.74 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8213 | 1633 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 6R7Y | 4747 | 2022-07-03 | 2019-03-29 | 4.2 | 4.23 | 4.05 | 4.2 | 0.010 | 1.07 | 0.0 | 0.06 | 13.58 | 0.01 | 2.188 | 3.98 | 1.71 | 2.6 | 97.3 | 0.2 | -3.14 | 0.64 | 0.86 | — | 4.2 | 0.004 | 0.67 | 0.0 | 0.04 | 14.40 | 0.00 | 2.149 | 7.56 | 0.00 | 2.7 | 97.1 | 0.2 | 1.36 | 1.10 | 0.65 | 0.85 | — | 10062 | 1254 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6J4Z | 0674 | 2022-07-08 | 2019-01-10 | 4.1 | 4.64 | — | 3.0 | 0.009 | 1.21 | 3.0 | 0.07 | 19.06 | 0.01 | 1.393 | 7.20 | 0.75 | 4.3 | 95.0 | 0.7 | -1.66 | 0.75 | 0.63 | — | 3.0 | 0.004 | 0.66 | 0.0 | 0.04 | 19.47 | 0.00 | 2.071 | 14.14 | 0.00 | 4.5 | 95.4 | 0.1 | 0.73 | 0.91 | 0.84 | 0.79 | — | 47463 | 5061 | 34 | 351 | 10 | 0 | 0 | logfile |
✔ | 6J4X | 0672 | 2022-07-07 | 2019-01-10 | 4.3 | 4.78 | — | 3.1 | 0.009 | 1.21 | 3.0 | 0.07 | 17.53 | 0.01 | 1.803 | 7.07 | 0.74 | 4.3 | 95.1 | 0.7 | -1.67 | 0.75 | 0.60 | — | 3.0 | 0.004 | 0.67 | 0.0 | 0.04 | 18.01 | 0.00 | 1.972 | 15.80 | 0.02 | 4.2 | 95.8 | 0.1 | 0.62 | 2.30 | 0.85 | 0.79 | — | 46185 | 5122 | 34 | 265 | 11 | 0 | 0 | logfile |
✔ | 5KEL | 8240 | 2022-07-04 | 2016-06-09 | 4.3 | 4.47 | — | 4.3 | 0.014 | 1.80 | 0.0 | 0.10 | 11.20 | 0.01 | 1.763 | 12.88 | 0.45 | 3.4 | 95.3 | 1.3 | 1.64 | 0.78 | 0.75 | — | 4.3 | 0.005 | 0.88 | 0.0 | 0.05 | 13.37 | 0.01 | 2.059 | 24.93 | 0.00 | 9.2 | 90.3 | 0.5 | -1.27 | 1.10 | 0.81 | 0.82 | — | 19278 | 2409 | 24 | 0 | 45 | 0 | 0 | logfile |
✔ | 6oo2 | 20142 | 2022-07-04 | 2019-04-22 | 4.4 | 4.52 | — | 3.5 | 0.007 | 1.14 | 1.0 | 0.07 | 13.96 | 0.01 | 2.037 | 7.03 | 0.00 | 7.1 | 92.3 | 0.6 | -3.55 | 0.75 | 0.61 | — | 2.5 | 0.004 | 0.74 | 0.0 | 0.04 | 12.97 | 0.00 | 0.867 | 17.94 | 0.00 | 5.8 | 94.2 | 0.0 | 1.38 | 1.01 | 0.86 | 0.80 | — | 16691 | 2436 | 24 | 0 | 19 | 0 | 0 | logfile |