Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6TU7	10590	2023-02-24	2020-01-03	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✔	7ZC6	14622	2023-02-20	2022-03-25	4.27	4.35	4.17	4.3	0.014	1.95	12.0	2.55	19.20	0.01	2.098	12.11	10.79	6.1	93.1	0.8	-1.59	0.66	0.74	—	4.3	0.020	3.91	0.0	0.76	14.97	0.00	1.087	12.35	0.00	4.2	95.8	0.0	-0.82	0.73	0.68	0.77	—	11428	1513	11	0	12	0	0	logfile
✔	3J5R	5777	2023-02-22	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.36	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	7.3	0.004	0.91	0.0	0.04	13.17	0.00	2.141	20.76	0.00	6.8	92.9	0.4	0.29	1.77	0.67	0.53	—	17564	2324	4	0	44	0	0	logfile
✔	6V3G	21036	2023-02-26	2019-11-25	4.0	4.39	—	4.1	0.008	1.05	0.0	0.07	10.57	0.01	2.211	13.47	2.66	5.6	94.4	0.0	-2.76	0.72	0.77	—	4.1	0.003	0.77	0.0	0.04	12.72	0.00	2.157	14.36	0.19	3.5	96.5	0.0	-0.65	0.88	0.72	0.83	—	28520	3580	4	0	0	0	0	logfile
✘	6oPC	20149	2023-02-27	2019-04-24	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30015	4455	13	0	48	0	0	logfile
✘	7BKD	12210	2023-02-25	2021-01-15	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24799	3177	18	0	26	0	0	logfile
✘	6NQ0	0477	2023-02-19	2019-01-18	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1242	4	0	2	0	0	logfile
✘	6XZR	10666	2023-02-25	2020-02-05	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✔	7XQJ	33398	2023-02-19	2022-05-07	4.0	4.56	3.73	4.2	0.007	0.84	0.0	0.05	15.98	0.01	2.401	6.40	6.01	6.5	93.5	0.0	-2.82	0.78	0.85	—	4.3	0.004	0.84	0.0	0.04	15.98	0.00	2.320	10.96	0.46	4.8	95.2	0.0	0.90	0.78	0.78	0.85	—	9960	1224	6	0	0	0	0	logfile
✘	7W9M	32370	2023-02-21	2021-12-10	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14219	1710	7	0	18	0	0	logfile
✘	6C9A	7435	2023-02-20	2018-01-25	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12182	1446	6	0	8	0	0	logfile
✔	7KVC	23046	2023-02-24	2020-11-27	4.7	4.90	—	4.8	0.005	0.84	0.0	0.05	13.91	0.00	2.224	33.61	0.00	10.7	89.3	0.0	-2.46	0.82	0.81	—	4.8	0.004	0.76	0.0	0.04	14.05	0.01	2.222	24.53	0.00	5.6	94.4	0.0	-0.15	0.55	0.81	0.79	—	21920	2660	10	0	0	0	0	logfile
✔	6R7Y	4747	2023-02-19	2019-03-29	4.2	4.23	4.05	4.2	0.010	1.07	0.0	0.06	13.58	0.01	2.188	3.88	1.71	2.6	97.3	0.2	-3.14	0.64	0.86	—	4.2	0.004	0.64	0.0	0.04	14.13	0.00	2.200	7.07	0.00	2.8	97.0	0.2	1.52	1.09	0.65	0.85	—	10062	1254	4	0	6	0	0	logfile
✔	6YRK	10890	2023-02-27	2020-04-20	4.1	4.59	—	4.0	0.014	1.85	13.0	0.12	18.90	0.01	2.473	6.64	12.77	6.4	93.2	0.5	-2.49	0.68	0.44	—	4.1	0.003	0.72	0.0	0.04	14.01	0.00	2.124	20.91	0.00	5.0	94.9	0.1	-1.13	1.88	0.85	0.68	—	15058	1937	2	0	0	0	0	logfile
✘	3J5Q	5776	2023-02-22	2013-10-28	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18556	2448	8	0	44	0	292	logfile
✔	6oCE	20017	2023-02-20	2019-03-23	4.9	4.11	—	4.0	0.006	0.73	0.0	0.04	8.07	0.01	1.868	8.56	0.00	9.9	90.1	0.0	-4.37	0.45	0.60	—	4.0	0.003	0.72	0.0	0.04	12.78	0.01	2.268	10.55	0.00	12.4	87.6	0.0	-2.55	1.79	0.46	0.62	—	11228	1378	2	0	0	0	0	logfile
✔	6DZW	8941	2023-02-18	2018-07-05	4.3	4.31	5.22	4.9	0.004	0.86	0.0	0.09	13.51	0.01	2.052	3.87	0.36	3.2	96.8	0.0	-4.99	0.45	0.53	—	5.0	0.003	0.73	0.0	0.04	13.45	0.00	2.178	15.02	0.12	4.6	95.4	0.0	-1.34	1.76	0.48	0.60	—	7829	988	6	0	4	0	0	logfile
✘	6NQ2	0479	2023-02-19	2019-01-18	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1242	4	0	2	0	0	logfile
✔	7UY8	26867	2023-02-19	2022-05-06	4.5	8.56	4.38	4.2	0.003	0.63	1.0	0.05	14.55	0.00	2.207	8.69	0.00	6.1	93.9	0.0	-0.66	0.79	0.60	—	4.4	0.003	0.66	0.0	0.04	14.44	0.00	2.152	20.87	0.00	5.8	94.1	0.1	-0.35	1.42	0.92	0.85	—	9552	1161	5	0	1	0	0	logfile
✔	6U1N	20612	2023-02-17	2019-08-16	4.0	4.36	—	4.0	0.008	0.81	0.0	0.04	12.09	0.00	2.198	17.99	0.00	7.8	92.2	0.0	-4.67	0.84	0.82	—	4.0	0.004	0.69	0.0	0.04	13.20	0.00	2.160	12.27	0.00	4.5	95.5	0.0	-0.54	0.51	0.84	0.81	—	5863	864	5	0	1	0	0	logfile

• ← previous
• Page 2 of 353
• next →