Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DMo	7964	2022-07-03	2018-06-05	4.1	4.16	—	4.1	0.008	1.26	0.0	0.06	13.66	0.01	1.764	8.97	2.78	11.1	88.6	0.3	-4.11	0.55	0.64	—	4.1	0.004	0.87	0.0	0.05	13.51	0.00	2.132	16.15	0.00	10.5	89.5	0.0	-0.53	1.27	0.59	0.72	—	7853	982	1	0	7	0	0	logfile
✘	3J5R	5777	2022-07-04	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.60	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17564	2324	4	0	44	0	0	logfile
✔	6SFX	10162	2022-07-04	2019-08-02	4.0	3.90	3.75	3.9	0.012	1.02	1.0	0.06	16.15	0.01	0.560	24.28	0.14	7.7	92.0	0.3	-4.75	0.73	0.74	—	3.8	0.004	0.91	0.0	0.05	18.21	0.01	2.058	23.86	0.74	4.7	95.2	0.0	-1.10	1.52	0.74	0.76	—	20196	2602	14	0	0	0	0	logfile
✔	5KYH	8298	2022-07-07	2016-07-21	4.0	3.99	—	4.2	0.014	1.82	0.0	0.11	11.44	0.01	1.692	34.34	3.90	2.5	96.2	1.3	-0.68	0.47	0.78	—	4.1	0.003	0.75	0.0	0.05	15.12	0.00	2.070	10.40	0.35	5.4	94.6	0.0	0.13	1.73	0.47	0.79	—	38892	5082	21	0	0	0	0	logfile
✔	6B19	7031	2022-07-03	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	16.18	0.00	19.4	80.5	0.1	-5.73	0.74	0.63	—	4.4	0.003	0.87	0.0	0.04	13.09	0.00	1.943	28.42	0.00	24.5	75.5	0.0	-5.38	1.33	0.77	0.65	—	5699	907	4	38	0	0	409	logfile
✔	6V3G	21036	2022-07-06	2019-11-25	4.0	4.39	—	4.1	0.008	1.05	0.0	0.07	10.57	0.01	2.211	13.54	2.66	5.6	94.4	0.0	-2.76	0.72	0.77	—	4.1	0.003	0.74	0.0	0.04	12.79	0.00	2.151	15.13	0.38	3.7	96.3	0.0	-0.51	0.89	0.73	0.83	—	28520	3580	4	0	0	0	0	logfile
✔	5Y5Y	6811	2022-07-06	2017-08-10	4.7	4.66	—	4.6	0.027	2.87	128.0	0.17	18.51	0.03	2.246	4.76	9.44	16.3	75.1	8.6	-5.44	0.70	0.77	—	4.6	0.007	1.01	0.0	0.05	15.19	0.01	2.040	19.31	0.00	10.8	88.8	0.5	-1.68	1.75	0.70	0.82	—	32159	4164	15	0	2	0	0	logfile
✔	6HRB	0258	2022-07-03	2018-09-26	4.0	4.20	3.96	4.0	0.008	0.96	0.0	0.05	9.28	0.01	2.186	6.75	0.26	7.2	92.8	0.0	-4.97	0.74	0.84	—	4.0	0.003	0.76	0.0	0.04	13.56	0.00	2.132	15.05	0.18	4.3	95.7	0.0	-0.40	1.27	0.74	0.84	—	10787	1447	5	0	1	0	0	logfile
✔	6J50	0675	2022-07-08	2019-01-10	4.7	5.34	—	3.4	0.009	1.21	3.0	0.07	19.05	0.01	1.789	9.58	0.77	4.3	95.0	0.7	-1.67	0.74	0.56	—	3.2	0.003	0.64	0.0	0.04	19.34	0.00	2.005	14.25	0.00	3.6	96.3	0.1	1.02	1.74	0.85	0.77	—	47422	5061	34	349	10	0	0	logfile
✔	6UGF	20763	2022-07-04	2019-09-26	4.2	4.51	—	4.2	0.008	1.11	0.0	0.05	13.93	0.01	2.046	4.71	0.30	6.0	93.9	0.1	-4.55	0.80	0.72	—	4.3	0.002	0.59	0.0	0.04	13.19	0.00	1.955	7.70	0.00	4.1	95.9	0.0	-0.21	0.62	0.84	0.81	—	13874	1862	12	0	9	0	0	logfile
✔	5KEN	8242	2022-07-04	2016-06-09	4.3	6.36	5.67	5.5	0.014	1.81	4.0	0.19	11.62	0.01	1.282	7.95	0.22	2.9	95.6	1.4	1.45	0.82	0.71	—	5.5	0.004	0.77	0.0	0.04	13.20	0.00	1.986	29.93	0.00	8.5	90.9	0.6	-1.64	2.78	0.84	0.80	—	16913	2147	20	0	24	0	0	logfile
✔	6GH6	0002	2022-07-05	2018-05-04	4.1	4.20	—	3.9	0.004	0.91	0.0	0.05	14.40	0.00	1.934	16.38	0.38	9.7	89.3	0.9	-3.61	0.85	0.74	—	3.9	0.004	0.77	0.0	0.04	16.02	0.00	1.988	11.94	0.08	9.3	90.0	0.6	-0.97	1.78	0.87	0.81	—	28051	3482	8	96	51	0	0	logfile
✔	6HV9	0288	2022-07-08	2018-10-10	4.98	4.88	—	4.5	0.012	1.86	14.0	0.09	12.25	0.01	1.447	9.27	0.49	10.9	88.8	0.3	-4.02	0.78	0.66	—	4.5	0.010	0.99	1.0	0.04	13.60	0.01	1.541	18.29	0.04	8.9	91.1	0.1	-1.85	1.66	0.79	0.68	—	47617	6040	18	49	4	0	0	logfile
✘	6HiN	0225	2022-07-04	2018-08-30	4.1	4.24	—	4.2	0.009	1.15	0.0	0.07	11.82	0.01	1.347	6.61	0.32	1.5	98.5	0.0	-4.98	0.81	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14220	1675	10	0	30	0	0	logfile
✘	6Q0J	20550	2022-07-03	2019-08-01	4.9	4.69	—	4.1	0.012	1.51	3.0	0.09	7.93	0.00	1.185	2.10	0.00	5.4	93.3	1.3	-2.84	0.74	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8213	1633	8	0	6	0	0	logfile
✔	6R7Y	4747	2022-07-03	2019-03-29	4.2	4.23	4.05	4.2	0.010	1.07	0.0	0.06	13.58	0.01	2.188	3.98	1.71	2.6	97.3	0.2	-3.14	0.64	0.86	—	4.2	0.004	0.67	0.0	0.04	14.40	0.00	2.149	7.56	0.00	2.7	97.1	0.2	1.36	1.10	0.65	0.85	—	10062	1254	4	0	6	0	0	logfile
✔	6J4Z	0674	2022-07-08	2019-01-10	4.1	4.64	—	3.0	0.009	1.21	3.0	0.07	19.06	0.01	1.393	7.20	0.75	4.3	95.0	0.7	-1.66	0.75	0.63	—	3.0	0.004	0.66	0.0	0.04	19.47	0.00	2.071	14.14	0.00	4.5	95.4	0.1	0.73	0.91	0.84	0.79	—	47463	5061	34	351	10	0	0	logfile
✔	6J4X	0672	2022-07-07	2019-01-10	4.3	4.78	—	3.1	0.009	1.21	3.0	0.07	17.53	0.01	1.803	7.07	0.74	4.3	95.1	0.7	-1.67	0.75	0.60	—	3.0	0.004	0.67	0.0	0.04	18.01	0.00	1.972	15.80	0.02	4.2	95.8	0.1	0.62	2.30	0.85	0.79	—	46185	5122	34	265	11	0	0	logfile
✔	5KEL	8240	2022-07-04	2016-06-09	4.3	4.47	—	4.3	0.014	1.80	0.0	0.10	11.20	0.01	1.763	12.88	0.45	3.4	95.3	1.3	1.64	0.78	0.75	—	4.3	0.005	0.88	0.0	0.05	13.37	0.01	2.059	24.93	0.00	9.2	90.3	0.5	-1.27	1.10	0.81	0.82	—	19278	2409	24	0	45	0	0	logfile
✔	6oo2	20142	2022-07-04	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	7.03	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.5	0.004	0.74	0.0	0.04	12.97	0.00	0.867	17.94	0.00	5.8	94.2	0.0	1.38	1.01	0.86	0.80	—	16691	2436	24	0	19	0	0	logfile

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