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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7NJ7 | 12375 | 2023-11-20 | 2021-02-16 | 4.82 | 5.23 | — | 4.8 | 0.004 | 0.73 | 1.0 | 0.04 | 13.69 | 0.01 | 1.907 | 8.72 | 0.19 | 4.3 | 95.7 | 0.0 | -0.72 | 0.74 | 0.46 | — | 4.9 | 0.003 | 0.63 | 0.0 | 0.04 | 13.62 | 0.00 | 1.843 | 18.66 | 0.00 | 5.1 | 94.9 | 0.0 | -0.81 | 2.32 | 0.82 | 0.64 | — | 28818 | 1797 | 6 | 23 | 0 | 0 | 13868 | logfile |
✘ | 7WU5 | 32820 | 2023-11-14 | 2022-02-05 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6948 | 888 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7F46 | 31444 | 2023-11-14 | 2021-06-17 | 4.79 | 5.15 | — | 3.3 | 0.006 | 0.84 | 0.0 | 0.05 | 13.38 | 0.01 | 2.218 | 12.18 | 0.00 | 8.9 | 91.1 | 0.0 | -2.90 | 0.77 | 0.60 | — | 4.4 | 0.003 | 0.77 | 0.0 | 0.05 | 12.89 | 0.01 | 2.142 | 16.52 | 0.00 | 6.3 | 93.7 | 0.0 | -2.00 | 1.56 | 0.79 | 0.62 | — | 6564 | 842 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 6JZo | 9898 | 2023-11-18 | 2019-05-03 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21405 | 2657 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6TF9 | 10491 | 2023-11-16 | 2019-11-13 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6Hio | 0226 | 2023-11-16 | 2018-08-30 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16085 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 8HKU | 34860 | 2023-11-13 | 2022-11-28 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6AEi | 9615 | 2023-11-18 | 2018-08-05 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21142 | 2568 | 8 | 0 | 13 | 0 | 0 | logfile |
✔ | 7WD8 | 32434 | 2023-11-13 | 2021-12-21 | 4.3 | 3.48 | — | 3.5 | 0.002 | 0.51 | 0.0 | 0.04 | 6.43 | 0.00 | 2.246 | 8.80 | 0.00 | 4.1 | 95.7 | 0.2 | -0.96 | 0.60 | 0.61 | — | 3.4 | 0.005 | 0.84 | 0.0 | 0.05 | 12.81 | 0.01 | 2.128 | 19.11 | 0.00 | 7.2 | 92.6 | 0.2 | -0.68 | 1.67 | 0.64 | 0.68 | — | 4029 | 524 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7DXH | 30909 | 2023-11-17 | 2021-01-18 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20054 | 2150 | 31 | 0 | 69 | 0 | 0 | logfile |
✔ | 7Y0o | 33551 | 2023-11-13 | 2022-06-05 | 4.4 | 3.19 | 4.10 | 3.0 | 0.004 | 0.93 | 0.0 | 0.06 | 15.07 | 0.01 | 2.254 | 9.72 | 0.00 | 9.8 | 90.1 | 0.2 | -3.24 | 0.65 | 0.55 | — | 3.0 | 0.003 | 0.70 | 0.0 | 0.05 | 15.01 | 0.00 | 2.162 | 16.60 | 0.00 | 10.5 | 89.5 | 0.0 | -2.96 | 0.45 | 0.66 | 0.56 | — | 4185 | 541 | 6 | 0 | 0 | 18 | 0 | logfile |
✔ | 8HPL | 34932 | 2023-11-15 | 2022-12-12 | 4.29 | 4.66 | 4.34 | 4.3 | 0.012 | 1.77 | 1.0 | 0.14 | 12.37 | 0.01 | 2.269 | 5.50 | 0.00 | 8.9 | 91.1 | 0.0 | -2.47 | 0.70 | 0.80 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.04 | 11.88 | 0.00 | 2.106 | 10.12 | 0.00 | 4.5 | 95.5 | 0.0 | -0.18 | 0.77 | 0.70 | 0.80 | — | 12013 | 1757 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7NK2 | 12429 | 2023-11-20 | 2021-02-17 | 4.84 | 4.93 | — | 4.8 | 0.004 | 0.73 | 2.0 | 0.05 | 13.61 | 0.01 | 1.907 | 8.81 | 0.32 | 4.3 | 95.7 | 0.0 | -0.71 | 0.61 | 0.43 | — | 4.8 | 0.003 | 0.66 | 0.0 | 0.04 | 13.83 | 0.00 | 1.914 | 17.59 | 0.00 | 5.7 | 94.3 | 0.0 | -0.91 | 4.61 | 0.73 | 0.68 | — | 28776 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 5LiJ | 4054 | 2023-11-13 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.17 | 0.0 | 0.04 | 10.44 | 0.00 | 2.149 | 15.78 | 0.00 | 35.3 | 64.7 | 0.0 | -5.53 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 6DG8 | 7883 | 2023-11-16 | 2018-05-17 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16715 | 1955 | 24 | 0 | 40 | 0 | 0 | logfile |
✔ | 6R23 | 4708 | 2023-11-13 | 2019-03-15 | 4.9 | 4.57 | — | 4.6 | 0.006 | 1.07 | 0.0 | 0.05 | 16.56 | 0.01 | 2.332 | 7.52 | 0.00 | 7.9 | 92.1 | 0.0 | -4.61 | 0.60 | 0.75 | — | 4.6 | 0.003 | 0.61 | 0.0 | 0.04 | 16.41 | 0.00 | 2.466 | 11.77 | 0.00 | 9.0 | 91.0 | 0.0 | -0.07 | 3.42 | 0.60 | 0.74 | — | 1518 | 182 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NKi | 12440 | 2023-11-20 | 2021-02-18 | 4.67 | 4.96 | — | 4.6 | 0.004 | 0.67 | 0.0 | 0.04 | 13.49 | 0.01 | 1.908 | 8.85 | 0.00 | 4.0 | 96.0 | 0.0 | -0.64 | 0.67 | 0.41 | — | 4.6 | 0.003 | 0.64 | 0.0 | 0.04 | 14.03 | 0.00 | 1.892 | 18.40 | 0.00 | 4.7 | 95.3 | 0.0 | -0.65 | 2.33 | 0.79 | 0.63 | — | 28775 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7WLC | 32581 | 2023-11-13 | 2022-01-13 | 4.0 | 4.24 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.71 | 0.00 | 2.198 | 15.62 | 0.00 | 6.1 | 93.9 | 0.0 | -1.35 | 0.71 | 0.77 | — | 4.2 | 0.004 | 0.80 | 0.0 | 0.05 | 16.00 | 0.00 | 2.188 | 18.56 | 0.56 | 8.3 | 91.7 | 0.0 | -1.72 | 0.54 | 0.72 | 0.78 | — | 3307 | 430 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MFE | 23814 | 2023-11-14 | 2021-04-09 | 4.07 | 3.82 | — | 3.8 | 0.002 | 0.59 | 0.0 | 0.04 | 15.26 | 0.00 | 1.387 | 18.00 | 0.41 | 6.6 | 93.4 | 0.0 | -2.56 | 0.63 | 0.64 | — | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 15.41 | 0.00 | 2.119 | 16.38 | 0.00 | 5.6 | 94.4 | 0.0 | -1.25 | 0.57 | 0.62 | 0.63 | — | 6844 | 859 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 6MN7 | 9166 | 2023-11-18 | 2018-10-01 | 4.8 | 5.01 | — | 5.0 | 0.016 | 2.23 | 12.0 | 0.12 | 10.62 | 0.02 | 1.395 | 35.74 | 0.57 | 8.6 | 89.4 | 2.0 | -2.34 | 0.50 | 0.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21447 | 2418 | 66 | 0 | 192 | 0 | 0 | logfile |