Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RFE	24439	2022-11-29	2021-07-14	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59096	3800	16	0	32	0	29576	logfile
✔	7P16	13157	2022-11-29	2021-07-01	4.3	4.40	3.53	4.3	0.004	0.73	0.0	0.04	15.07	0.00	2.178	7.56	0.00	2.5	97.5	0.0	-0.08	0.65	0.77	—	4.3	0.003	0.71	0.0	0.04	14.24	0.00	2.164	11.96	0.00	3.4	96.6	0.0	0.67	1.45	0.64	0.77	—	3621	444	3	0	1	0	0	logfile
✔	7T4L	25679	2022-11-29	2021-12-10	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6062	755	2	0	0	0	0	logfile
✔	7AR8	11876	2022-11-29	2020-10-23	3.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	61461	7676	64	0	55	0	0	logfile
✔	7RTo	24685	2022-11-29	2021-08-13	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6607	888	3	0	0	0	0	logfile
✔	7RYQ	24745	2022-11-29	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.37	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.003	0.77	0.0	0.04	14.07	0.00	2.218	15.93	0.00	6.6	93.4	0.0	-0.30	1.23	0.85	0.77	—	4332	527	1	0	0	0	0	logfile
✔	7B6E	12053	2022-11-29	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.28	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	4.9	0.003	0.98	0.0	0.05	14.71	0.00	2.119	24.18	0.00	10.9	89.1	0.0	-1.33	0.86	0.61	0.66	—	2205	269	1	0	0	0	0	logfile
✔	7P2Q	13172	2022-11-29	2021-07-06	4.9	4.54	—	4.3	0.003	0.80	0.0	0.05	8.69	0.01	2.264	4.28	0.00	5.0	95.0	0.0	-3.09	0.77	0.72	—	4.3	0.003	0.75	0.0	0.04	12.53	0.00	2.212	14.61	0.00	4.7	95.3	0.0	-0.39	1.80	0.80	0.74	—	4780	587	5	0	5	0	0	logfile
✔	7P5M	13201	2022-11-29	2021-07-14	3.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6204	788	8	0	12	0	0	logfile
✔	7PDD	13334	2022-11-29	2021-08-05	4.2	4.47	—	4.3	0.004	0.75	0.0	0.04	14.38	0.00	2.092	21.59	0.00	7.1	92.9	0.0	-4.11	0.79	0.75	—	4.3	0.003	0.76	0.0	0.04	13.98	0.00	2.150	21.36	0.00	5.3	94.7	0.0	-1.30	1.86	0.78	0.74	—	4516	577	2	0	0	0	0	logfile
✔	7E3C	30979	2022-11-29	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.81	0.01	2.151	21.49	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.003	0.74	0.0	0.05	14.07	0.00	2.129	15.48	0.00	11.6	88.4	0.0	-2.98	1.56	0.79	0.79	—	2937	405	4	0	1	0	0	logfile
✔	7E3B	30978	2022-11-29	2021-02-08	4.2	4.05	—	4.0	0.006	0.81	0.0	0.05	13.26	0.00	2.241	16.63	0.00	8.2	91.8	0.0	-2.04	0.74	0.84	—	4.0	0.004	0.70	0.0	0.05	13.25	0.00	2.242	14.15	0.00	7.0	93.0	0.0	-1.24	0.40	0.74	0.83	—	3299	421	4	0	1	0	0	logfile
✔	7NPS	12518	2022-11-29	2021-02-28	3.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55350	3732	9	0	0	0	27681	logfile
✔	7F73	31484	2022-11-29	2021-06-27	4.0	4.29	3.95	4.3	0.007	1.07	0.0	0.06	15.26	0.00	2.247	11.96	4.10	3.1	96.9	0.0	0.17	0.57	0.70	—	4.3	0.008	1.01	1.0	0.05	17.43	0.01	2.193	17.23	0.56	3.6	96.4	0.0	1.13	3.62	0.60	0.74	—	4934	586	2	0	0	0	0	logfile
✘	7ETW	31303	2022-11-29	2021-05-14	4.1	4.06	—	4.0	0.008	1.00	1.0	0.07	13.39	0.01	1.417	16.29	1.36	11.6	86.4	1.9	-5.46	0.53	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4952	680	4	0	6	0	0	logfile
✔	7ML0	23904	2022-11-29	2021-04-27	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64214	7986	40	132	139	0	0	logfile
✔	7QiC	13987	2022-11-29	2021-12-14	4.1	4.27	4.00	4.2	0.003	0.65	0.0	0.04	12.83	0.00	2.221	13.16	0.20	7.7	92.3	0.0	-0.78	0.64	0.79	—	4.2	0.004	0.67	0.0	0.04	12.50	0.00	2.189	13.77	0.20	8.4	91.6	0.0	-0.07	1.38	0.65	0.79	—	4841	639	4	0	1	0	0	logfile
✔	7WD8	32434	2022-11-29	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	9.18	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.4	0.005	0.82	0.0	0.05	12.56	0.01	2.093	19.99	0.00	7.2	92.6	0.2	-0.59	1.67	0.64	0.68	—	4029	524	4	0	0	0	0	logfile
✔	8A8M	15233	2022-11-29	2022-06-23	4.0	5.84	4.31	4.3	0.004	0.89	0.0	0.05	17.75	0.00	2.218	29.38	1.56	8.5	91.4	0.2	-2.63	0.78	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5244	647	4	0	6	0	0	logfile
✔	7WWB	32865	2022-11-29	2022-02-12	3.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5428	666	4	0	4	0	0	logfile

• ← previous
• Page 2 of 23
• next →