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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6V6C | 21068 | 2024-03-10 | 2019-12-04 | 4.5 | 4.50 | — | 4.4 | 0.003 | 0.55 | 0.0 | 0.04 | 13.78 | 0.00 | 2.226 | 7.10 | 0.00 | 5.1 | 94.9 | 0.0 | -4.56 | 0.42 | 0.82 | — | 4.4 | 0.003 | 0.64 | 0.0 | 0.04 | 14.31 | 0.00 | 2.216 | 5.60 | 0.00 | 5.5 | 94.5 | 0.0 | -0.07 | 2.01 | 0.42 | 0.81 | — | 4007 | 497 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YZP | 14393 | 2024-03-17 | 2022-02-21 | 4.0 | 4.15 | 4.02 | 4.0 | 0.003 | 0.62 | 1.0 | 0.04 | 17.72 | 0.00 | 1.593 | 8.32 | 0.00 | 4.2 | 95.8 | 0.0 | 0.73 | 0.83 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14107 | 1633 | 9 | 59 | 8 | 0 | 0 | logfile |
✔ | 7A96 | 11686 | 2024-03-21 | 2020-09-01 | 4.8 | 5.70 | 4.94 | 4.9 | 0.003 | 0.49 | 1.0 | 0.04 | 5.85 | 0.00 | 2.236 | 3.91 | 0.82 | 10.8 | 89.2 | 0.0 | -4.46 | 0.88 | 0.77 | — | 4.9 | 0.003 | 0.66 | 0.0 | 0.04 | 9.03 | 0.00 | 2.098 | 12.69 | 0.00 | 4.2 | 95.8 | 0.0 | -1.13 | 0.90 | 0.89 | 0.83 | — | 29811 | 3783 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YWD | 6853 | 2024-03-14 | 2017-11-29 | 4.2 | 4.38 | 4.11 | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 14.12 | 0.00 | 2.031 | 12.08 | 6.20 | 4.1 | 95.9 | 0.0 | -1.54 | 0.62 | 0.74 | — | 4.2 | 0.003 | 0.75 | 0.0 | 0.04 | 13.44 | 0.00 | 1.935 | 14.55 | 0.00 | 4.0 | 95.9 | 0.1 | 1.10 | 1.81 | 0.65 | 0.77 | — | 8997 | 1154 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6D00 | 7782 | 2024-03-23 | 2018-04-09 | 4.0 | 3.65 | — | 3.0 | 0.001 | 0.45 | 0.0 | 0.04 | 9.42 | 0.00 | 2.284 | 3.91 | 0.05 | 6.5 | 92.8 | 0.7 | -4.95 | 0.62 | 0.43 | — | 3.2 | 0.004 | 0.90 | 0.0 | 0.05 | 15.27 | 0.00 | 2.032 | 20.08 | 2.45 | 4.2 | 95.8 | 0.0 | -0.92 | 1.61 | 0.83 | 0.68 | — | 38328 | 4824 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 6PVP | 20496 | 2024-03-18 | 2019-07-21 | 4.48 | 4.57 | — | 4.4 | 0.008 | 1.24 | 0.0 | 0.06 | 12.74 | 0.01 | 2.223 | 7.59 | 0.81 | 15.6 | 84.2 | 0.2 | -5.24 | 0.68 | 0.77 | — | 4.4 | 0.003 | 0.82 | 0.0 | 0.04 | 13.59 | 0.00 | 2.067 | 17.42 | 0.00 | 14.7 | 85.2 | 0.2 | -1.88 | 2.09 | 0.68 | 0.80 | — | 21425 | 2644 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 5WRG | 6679 | 2024-03-17 | 2016-12-01 | 4.3 | 4.45 | — | 4.3 | 0.007 | 1.40 | 0.0 | 0.07 | 12.06 | 0.01 | 2.191 | 9.91 | 0.53 | 18.0 | 81.4 | 0.7 | -5.05 | 0.66 | 0.69 | — | 4.3 | 0.004 | 0.97 | 0.0 | 0.05 | 12.23 | 0.00 | 2.031 | 18.59 | 0.00 | 17.4 | 82.5 | 0.1 | -3.27 | 1.52 | 0.68 | 0.75 | — | 16317 | 2208 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D44 | 30569 | 2024-03-20 | 2020-09-22 | 4.0 | 4.14 | — | 4.0 | 0.006 | 0.86 | 0.0 | 0.05 | 14.78 | 0.00 | 2.049 | 20.50 | 0.28 | 16.3 | 83.6 | 0.1 | -5.25 | 0.80 | 0.78 | — | 4.1 | 0.004 | 0.78 | 1.0 | 0.04 | 16.13 | 0.00 | 1.996 | 14.94 | 2.63 | 6.7 | 93.3 | 0.0 | -1.76 | 0.61 | 0.80 | 0.76 | — | 28391 | 3825 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NBX | 12262 | 2024-03-19 | 2021-01-28 | 4.8 | 5.30 | 4.72 | 4.9 | 0.008 | 1.04 | 0.0 | 0.05 | 15.90 | 0.01 | 1.950 | 12.59 | 0.00 | 12.3 | 87.6 | 0.1 | -4.49 | 0.76 | 0.82 | — | 4.9 | 0.005 | 0.71 | 0.0 | 0.04 | 14.21 | 0.00 | 1.818 | 18.56 | 0.00 | 12.0 | 88.0 | 0.0 | -2.46 | 0.68 | 0.76 | 0.81 | — | 22637 | 1475 | 5 | 0 | 0 | 0 | 11129 | logfile |
✔ | 7PDD | 13334 | 2024-03-10 | 2021-08-05 | 4.2 | 4.47 | — | 4.3 | 0.004 | 0.75 | 0.0 | 0.04 | 14.38 | 0.00 | 2.092 | 20.92 | 0.00 | 7.1 | 92.9 | 0.0 | -4.11 | 0.79 | 0.75 | — | 4.3 | 0.003 | 0.73 | 0.0 | 0.05 | 13.76 | 0.00 | 2.144 | 16.89 | 0.00 | 6.0 | 94.0 | 0.0 | -1.17 | 0.88 | 0.78 | 0.74 | — | 4516 | 577 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2024-03-23 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.007 | 0.92 | 2.0 | 0.04 | 24.18 | 0.01 | 1.729 | 49.48 | 5.60 | 12.2 | 87.1 | 0.7 | -2.94 | — | 0.92 | 0.86 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✔ | 6iGM | 9668 | 2024-03-19 | 2018-09-25 | 4.0 | 4.14 | — | 4.1 | 0.004 | 0.88 | 0.0 | 0.05 | 10.13 | 0.01 | 1.054 | 20.78 | 2.70 | 7.3 | 91.6 | 1.1 | -4.30 | 0.70 | 0.62 | — | 4.0 | 0.003 | 0.80 | 0.0 | 0.05 | 16.17 | 0.00 | 2.106 | 15.09 | 3.65 | 7.3 | 92.6 | 0.1 | -0.72 | 3.01 | 0.77 | 0.74 | — | 24257 | 3054 | 9 | 0 | 62 | 0 | 0 | logfile |
✔ | 8EXQ | 28659 | 2024-03-14 | 2022-10-25 | 4.9 | 5.40 | 5.55 | 6.0 | 0.020 | 1.74 | 0.0 | 0.10 | 10.28 | 0.01 | 2.002 | 1.81 | 0.00 | 2.5 | 97.3 | 0.2 | 0.34 | 0.52 | 0.45 | — | 5.9 | 0.003 | 0.72 | 0.0 | 0.04 | 12.63 | 0.00 | 2.230 | 15.59 | 0.00 | 4.5 | 95.3 | 0.2 | -0.38 | 2.51 | 0.57 | 0.62 | — | 9304 | 1108 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6KS8 | 0760 | 2024-03-12 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.86 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.003 | 0.69 | 0.0 | 0.04 | 11.58 | 0.00 | 2.091 | 17.25 | 0.01 | 3.7 | 96.3 | 0.0 | -0.05 | 1.87 | 0.81 | 0.72 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DR6 | 30824 | 2024-03-11 | 2020-12-26 | 4.1 | 4.22 | — | 4.2 | 0.002 | 0.55 | 0.0 | 0.04 | 7.81 | 0.00 | 2.196 | 10.05 | 0.12 | 4.9 | 94.9 | 0.1 | -2.74 | 0.68 | 0.63 | — | 4.2 | 0.003 | 0.75 | 0.0 | 0.04 | 13.22 | 0.00 | 2.122 | 15.61 | 0.03 | 3.2 | 96.7 | 0.0 | 0.11 | 2.26 | 0.73 | 0.73 | — | 59957 | 7661 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZD0 | 11172 | 2024-03-11 | 2020-06-13 | 4.6 | 4.62 | 2.80 | 3.7 | 0.004 | 0.91 | 0.0 | 0.05 | 7.55 | 0.00 | 2.207 | 10.05 | 0.00 | 10.1 | 89.8 | 0.1 | -4.73 | 0.59 | 0.58 | — | 4.5 | 0.003 | 0.78 | 0.0 | 0.04 | 5.38 | 0.00 | 2.341 | 5.89 | 0.00 | 15.0 | 84.6 | 0.4 | -4.68 | 2.32 | 0.61 | 0.58 | — | 7962 | 1611 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7S8B | 24892 | 2024-03-18 | 2021-09-17 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21124 | 2448 | 8 | 0 | 46 | 0 | 0 | logfile |
✔ | 5KGF | 8246 | 2024-03-16 | 2016-06-13 | 4.54 | 4.64 | — | 4.5 | 0.009 | 1.37 | 2.0 | 0.07 | 27.92 | 0.01 | 1.243 | 27.10 | 0.12 | 6.5 | 93.1 | 0.4 | -4.86 | 0.79 | 0.76 | — | 4.5 | 0.004 | 0.70 | 0.0 | 0.04 | 26.26 | 0.01 | 2.162 | 18.01 | 0.00 | 5.9 | 93.8 | 0.2 | -0.44 | 1.81 | 0.83 | 0.84 | — | 13782 | 986 | 14 | 290 | 0 | 0 | 0 | logfile |
✔ | 6V05 | 20969 | 2024-03-16 | 2019-11-18 | 4.1 | 4.20 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.05 | 13.87 | 0.00 | 2.054 | 9.26 | 0.75 | 3.6 | 96.3 | 0.1 | -2.86 | 0.70 | 0.79 | — | 4.1 | 0.003 | 0.64 | 0.0 | 0.04 | 13.32 | 0.00 | 2.193 | 8.92 | 0.00 | 4.4 | 95.6 | 0.0 | -0.29 | 1.07 | 0.70 | 0.76 | — | 13705 | 1884 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7A2G | 11624 | 2024-03-16 | 2020-08-17 | 4.1 | 6.36 | 4.20 | 6.0 | 0.006 | 0.86 | 0.0 | 0.04 | 15.22 | 0.01 | 1.869 | 47.63 | 0.49 | 16.3 | 83.4 | 0.2 | -5.55 | 0.86 | 0.78 | — | 6.0 | 0.003 | 0.76 | 0.0 | 0.04 | 14.41 | 0.00 | 2.028 | 28.62 | 0.00 | 11.4 | 88.6 | 0.0 | -1.91 | 0.72 | 0.86 | 0.79 | — | 13408 | 1680 | 12 | 0 | 4 | 4 | 0 | logfile |