Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JW4	36679	2023-09-29	2023-06-28	3.13	3.85	3.39	3.8	0.005	0.76	0.0	0.05	9.53	0.00	2.214	2.01	0.28	8.2	91.8	0.0	-4.11	0.63	0.70	2.66	3.7	0.003	0.66	0.0	0.04	14.13	0.00	2.179	5.92	0.19	5.7	94.3	0.0	-1.07	1.35	0.63	0.73	0.99	9582	1191	1	0	0	0	0	logfile
✔	8JVH	36674	2023-09-29	2023-06-28	3.19	3.79	3.33	3.7	0.005	0.78	0.0	0.05	9.56	0.00	2.195	2.24	0.18	8.6	91.4	0.0	-4.48	0.65	0.74	1.98	3.7	0.003	0.58	0.0	0.04	13.80	0.00	2.264	5.34	0.37	5.8	94.2	0.0	-0.47	1.34	0.63	0.75	1.42	9699	1205	1	0	0	0	0	logfile
✔	8JRV	36607	2023-09-30	2023-06-17	3.3	3.01	3.31	3.4	0.003	0.71	0.0	0.04	13.54	0.00	2.250	6.76	0.00	5.2	94.8	0.0	-0.16	0.66	0.78	1.94	3.3	0.003	0.78	0.0	0.04	16.14	0.00	2.000	13.11	0.53	6.2	93.7	0.1	-0.21	1.62	0.69	0.82	2.10	7707	1036	7	0	1	0	0	logfile
✔	8JRU	36606	2023-09-30	2023-06-17	3.5	3.76	3.42	3.7	0.004	0.71	0.0	0.04	14.83	0.00	2.241	7.56	0.29	5.5	94.5	0.0	0.41	0.67	0.76	2.11	3.7	0.003	0.66	0.0	0.04	15.26	0.00	2.193	9.94	0.43	6.9	93.0	0.1	-0.10	0.58	0.68	0.80	2.15	7120	947	6	0	1	0	0	logfile
✔	8JR9	36593	2023-09-28	2023-06-16	2.57	2.48	2.53	2.7	0.003	0.68	0.0	0.04	16.38	0.00	2.240	5.96	0.24	2.2	97.8	0.0	1.80	0.57	0.74	2.49	2.6	0.003	0.56	0.0	0.04	17.44	0.00	2.191	7.19	2.57	2.2	97.8	0.0	1.41	1.39	0.67	0.83	3.46	7893	1014	5	0	1	0	0	logfile
✔	8JPF	36478	2023-09-27	2023-06-11	3.02	3.21	3.41	3.3	0.006	1.76	0.0	0.27	15.47	0.00	2.214	5.45	0.46	2.7	97.3	0.0	2.25	0.48	0.75	2.58	3.3	0.003	0.66	0.0	0.04	15.74	0.00	2.177	8.40	1.38	2.4	97.6	0.0	1.93	1.23	0.44	0.77	3.04	2269	304	3	0	1	0	0	logfile
✔	8JPD	36476	2023-09-28	2023-06-11	2.81	3.01	2.83	3.1	0.004	0.61	0.0	0.04	14.35	0.00	2.283	4.50	0.37	2.7	97.3	0.0	0.83	0.68	0.79	3.29	3.0	0.003	0.60	0.0	0.04	17.34	0.00	2.192	7.73	1.68	2.6	97.4	0.0	1.00	1.36	0.69	0.86	3.14	5198	658	2	0	1	0	0	logfile
✔	8JoL	36459	2023-09-29	2023-06-07	3.0	3.98	2.98	3.4	0.009	1.46	0.0	0.07	17.24	0.01	2.214	35.79	16.43	12.3	86.8	0.8	-4.77	0.56	0.70	0.79	3.4	0.003	0.83	0.0	0.04	16.02	0.00	1.975	9.53	1.43	3.5	96.5	0.0	0.45	2.18	0.62	0.88	1.90	8513	1087	5	0	4	0	0	logfile
✔	8JMT	36426	2023-09-27	2023-06-05	3.3	3.55	3.41	3.7	0.003	0.74	0.0	0.04	14.38	0.00	2.204	8.56	0.00	3.5	96.5	0.0	-0.01	0.35	0.59	1.38	3.7	0.004	0.65	0.0	0.04	16.13	0.00	2.238	11.67	0.00	4.0	96.0	0.0	1.51	1.16	0.33	0.61	0.92	1894	234	1	0	0	0	0	logfile
✔	8JMN	36424	2023-09-30	2023-06-05	2.26	2.43	2.28	2.4	0.007	0.92	0.0	0.05	18.57	0.01	1.890	5.76	3.29	2.3	97.7	0.0	1.14	0.68	0.86	4.55	2.4	0.005	0.66	0.0	0.05	18.48	0.01	1.781	6.11	3.29	1.8	98.2	0.0	0.69	0.79	0.69	0.87	4.57	10491	1251	6	0	11	373	0	logfile
✔	8JLZ	36409	2023-09-28	2023-06-04	3.09	2.32	3.33	2.1	0.005	0.79	0.0	0.04	13.38	0.01	2.170	6.28	0.12	3.7	96.3	0.0	-0.56	0.78	0.77	2.77	2.1	0.003	0.56	0.0	0.04	15.11	0.00	2.129	6.41	0.25	2.4	97.6	0.0	0.27	0.35	0.79	0.79	2.31	7730	1015	5	0	1	0	0	logfile
✔	8JJo	36361	2023-09-27	2023-05-31	3.4	3.75	3.53	3.8	0.003	0.64	0.0	0.04	17.03	0.00	2.184	10.68	0.31	5.7	94.3	0.0	-0.11	0.40	0.71	1.06	3.8	0.003	0.54	0.0	0.04	17.92	0.00	2.198	9.53	0.62	5.1	94.6	0.3	0.97	0.38	0.36	0.72	1.41	3016	375	2	0	1	0	0	logfile
✔	8JJL	36360	2023-09-27	2023-05-30	3.2	3.53	3.25	3.5	0.004	0.75	0.0	0.04	14.60	0.01	2.173	11.69	1.55	4.0	96.0	0.0	1.28	0.52	0.78	1.93	3.5	0.003	0.61	0.0	0.04	16.99	0.00	2.133	9.22	0.00	4.0	96.0	0.0	1.92	0.69	0.48	0.81	1.85	3026	375	2	0	1	0	0	logfile
✔	8JJ8	36342	2023-09-27	2023-05-29	3.2	3.51	3.45	3.5	0.005	0.90	0.0	0.05	14.29	0.00	2.107	14.28	1.86	6.7	93.3	0.0	0.54	0.51	0.75	2.04	3.5	0.003	0.65	0.0	0.04	16.41	0.00	2.207	11.66	0.31	5.7	94.3	0.0	1.84	1.19	0.44	0.74	1.58	3023	375	2	0	1	0	0	logfile
✔	8JiU	36328	2023-09-29	2023-05-27	2.76	3.73	2.83	3.5	0.008	1.14	4.0	0.08	18.24	0.01	2.217	11.25	15.73	6.4	92.3	1.3	-2.62	0.69	0.80	2.29	3.5	0.003	0.80	0.0	0.04	15.88	0.00	2.140	12.15	3.12	4.1	95.6	0.3	0.07	0.79	0.67	0.79	2.26	9075	1177	7	0	2	0	0	logfile
✔	8JiT	36327	2023-09-29	2023-05-27	2.91	3.75	2.95	3.5	0.005	0.79	1.0	0.05	14.61	0.00	2.204	30.83	4.69	5.5	94.0	0.5	-0.47	0.69	0.80	2.15	3.5	0.003	0.77	0.0	0.04	15.69	0.00	2.118	10.39	2.50	3.8	96.1	0.1	0.61	1.24	0.69	0.82	1.85	9193	1176	7	0	1	0	0	logfile
✔	8JiR	36325	2023-09-29	2023-05-27	2.57	3.54	2.61	3.3	0.010	1.02	3.0	0.06	15.59	0.01	1.972	12.47	6.61	7.0	92.5	0.5	-1.76	0.67	0.77	3.14	3.3	0.003	0.69	0.0	0.04	16.53	0.00	2.202	10.15	1.95	4.7	95.3	0.0	0.50	0.57	0.67	0.79	2.52	9014	1167	7	0	1	0	0	logfile
✔	8JiQ	36324	2023-09-29	2023-05-27	3.4	3.86	3.37	3.7	0.003	0.64	0.0	0.04	15.17	0.00	2.202	10.10	2.47	4.1	95.5	0.4	-0.03	0.82	0.80	2.08	3.7	0.003	0.60	0.0	0.04	15.86	0.00	2.182	10.98	0.45	3.5	96.5	0.0	0.45	0.46	0.82	0.83	1.85	8707	1134	6	0	0	0	0	logfile
✔	8JiP	36323	2023-09-29	2023-05-27	2.85	3.83	2.89	3.6	0.006	1.05	1.0	0.07	18.74	0.00	2.156	16.09	14.94	6.6	92.6	0.8	-2.27	0.68	0.75	2.00	3.6	0.009	0.89	0.0	0.05	17.13	0.00	2.078	10.57	4.61	6.0	94.0	0.0	-0.35	0.79	0.67	0.82	2.20	9362	1180	7	0	1	0	0	logfile
✔	8JHU	36294	2023-09-28	2023-05-25	3.1	3.30	3.08	3.3	0.003	0.59	0.0	0.04	15.64	0.01	2.200	10.88	0.82	5.4	94.1	0.5	-0.27	0.69	0.84	2.83	3.3	0.005	0.60	0.0	0.04	16.05	0.00	2.160	10.95	0.55	6.4	93.6	0.0	0.04	0.37	0.70	0.87	3.37	6554	811	1	0	0	0	0	logfile

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