Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6K7M	9941	2023-08-11	2019-06-07	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10591	1307	5	0	9	0	0	logfile
✔	6K7L	9939	2023-08-11	2019-06-07	2.83	2.93	2.65	2.9	0.012	1.15	0.0	0.07	15.29	0.01	1.976	4.79	0.17	7.5	92.3	0.2	-3.27	0.58	0.83	3.57	2.9	0.003	0.65	0.0	0.05	16.82	0.00	1.952	8.73	1.22	6.1	93.9	0.0	-0.04	0.46	0.71	0.88	3.11	10615	1317	5	0	8	0	0	logfile
✔	6K7K	9937	2023-08-11	2019-06-07	3.04	3.15	2.84	3.1	0.011	1.45	0.0	0.07	15.05	0.01	2.000	5.46	0.35	7.1	92.9	0.0	-3.51	0.63	0.85	3.58	3.1	0.003	0.63	0.0	0.04	16.25	0.00	1.913	8.70	0.35	5.5	94.5	0.0	0.10	0.98	0.68	0.87	3.01	10586	1309	5	0	10	0	0	logfile
✔	6K7J	9935	2023-08-11	2019-06-07	3.08	3.21	2.88	3.2	0.013	1.23	0.0	0.07	15.30	0.01	2.159	5.68	0.17	8.6	91.2	0.2	-3.98	0.57	0.82	3.51	3.2	0.004	0.68	0.0	0.05	16.23	0.00	2.133	10.15	0.35	5.9	93.9	0.2	-1.03	0.93	0.68	0.84	3.16	10602	1311	5	0	8	0	0	logfile
✔	6K7i	9934	2023-08-11	2019-06-07	3.22	3.34	3.11	3.3	0.015	1.31	0.0	0.08	14.93	0.01	2.253	5.97	0.78	8.9	90.7	0.4	-4.41	0.60	0.84	3.87	3.3	0.004	0.69	0.0	0.05	16.17	0.00	2.181	8.75	0.09	6.0	94.0	0.0	-0.87	0.45	0.68	0.82	3.09	10590	1310	5	0	7	0	0	logfile
✔	6K7H	9932	2023-08-11	2019-06-07	3.22	3.37	3.03	3.3	0.011	1.11	0.0	0.06	15.66	0.01	2.274	5.60	1.13	6.5	93.5	0.0	-3.82	0.65	0.85	3.45	3.3	0.004	0.66	0.0	0.05	16.46	0.00	2.158	8.84	0.26	6.3	93.7	0.0	-0.46	0.95	0.65	0.87	2.89	10577	1312	4	0	6	0	0	logfile
✔	6K7G	9931	2023-08-11	2019-06-07	3.3	3.42	3.12	3.4	0.012	1.18	0.0	0.07	15.60	0.01	2.262	5.65	0.43	9.1	90.7	0.2	-4.12	0.61	0.85	3.53	3.4	0.003	0.65	0.0	0.04	16.80	0.00	2.129	10.23	0.00	7.0	93.0	0.0	-0.64	0.97	0.69	0.88	3.22	10569	1313	4	0	6	0	0	logfile
✘	6K61	9918	2023-08-27	2019-05-31	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49283	4542	44	0	259	0	0	logfile
✔	6K4Y	9916	2023-08-22	2019-05-27	3.79	3.88	—	3.9	0.008	0.98	0.0	0.06	14.87	0.01	2.242	8.96	0.68	7.6	92.3	0.1	-4.54	0.61	0.69	1.81	3.8	0.003	0.68	0.0	0.04	17.81	0.00	2.075	10.74	0.27	6.3	93.7	0.0	-0.94	1.59	0.72	0.80	1.13	33247	3950	11	105	3	0	0	logfile
✔	6K4M	9915	2023-08-21	2019-05-24	4.5	7.82	—	7.8	0.006	1.01	0.0	0.05	17.74	0.00	2.258	13.35	0.54	1.8	98.2	0.0	-4.61	0.68	0.84	—	7.8	0.004	0.90	0.0	0.04	15.28	0.00	2.080	24.57	0.15	2.6	97.4	0.0	-0.40	1.59	0.70	0.86	—	31508	3790	48	0	36	0	0	logfile
✔	6K43	9913	2023-08-21	2019-05-23	3.7	4.12	—	4.0	0.007	0.72	0.0	0.04	15.85	0.00	1.266	17.54	0.12	6.9	93.1	0.0	-2.02	0.75	0.82	1.49	4.1	0.004	0.72	0.0	0.03	18.20	0.00	2.172	5.80	0.36	3.5	96.5	0.0	4.18	0.82	0.76	0.81	1.59	31808	3840	48	0	36	0	0	logfile
✔	6K42	9912	2023-08-10	2019-05-23	4.1	4.04	—	4.1	0.005	0.82	0.0	0.05	9.20	0.01	2.288	4.50	0.31	5.4	94.6	0.0	-4.37	0.60	0.63	—	4.0	0.003	0.74	0.0	0.04	13.02	0.00	2.096	13.34	0.21	5.5	94.5	0.0	-1.40	2.63	0.66	0.73	—	8816	1116	6	0	1	0	0	logfile
✔	6K41	9911	2023-08-10	2019-05-23	2.9	2.88	—	2.9	0.009	1.07	0.0	0.06	10.20	0.01	2.166	3.99	0.44	5.1	94.9	0.0	-2.62	0.73	0.85	4.09	2.9	0.003	0.60	0.0	0.04	15.25	0.00	2.060	6.02	2.85	3.6	96.4	0.0	0.62	0.67	0.75	0.83	3.41	8430	1077	6	0	1	0	0	logfile
✔	6K3o	9910	2023-08-21	2019-05-21	3.4	3.86	—	3.8	0.003	0.56	0.0	0.03	14.46	0.00	1.077	16.09	0.00	3.8	96.2	0.0	-1.52	0.79	0.82	3.15	3.8	0.004	0.69	0.0	0.03	17.15	0.00	2.027	6.25	0.66	2.0	98.0	0.0	4.00	0.49	0.77	0.81	2.57	31508	3790	48	0	36	0	0	logfile
✔	6K32	9907	2023-08-11	2019-05-16	3.2	3.73	—	3.8	0.009	1.22	1.0	0.07	11.49	0.01	1.345	10.22	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.004	0.78	0.0	0.05	16.38	0.00	1.254	13.10	0.77	5.7	94.2	0.0	-1.38	1.36	0.31	0.82	2.33	61364	7723	10	8	6	0	0	logfile
✔	6K1H	9906	2023-08-12	2019-05-10	3.52	3.52	—	3.5	0.007	0.98	0.0	0.05	13.18	0.01	1.774	20.26	0.90	13.3	86.5	0.2	-4.44	0.64	0.82	1.93	3.5	0.003	0.76	0.0	0.04	15.34	0.01	2.115	14.29	0.41	8.5	91.5	0.0	-1.75	1.51	0.64	0.81	1.95	11769	1560	9	0	3	0	0	logfile
✘	6K15	9905	2023-08-16	2019-05-09	3.4	3.68	—	3.6	0.005	0.96	0.0	0.05	10.23	0.01	1.639	5.00	0.33	8.6	91.3	0.1	-4.21	0.74	0.78	2.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21486	2655	14	0	1	0	0	logfile
✔	6K0B	9900	2023-08-18	2019-05-05	4.3	4.49	—	4.2	0.003	0.78	0.0	0.04	14.21	0.01	2.011	5.73	0.66	6.1	93.9	0.0	-3.67	0.84	0.69	—	4.2	0.003	0.67	0.0	0.04	15.27	0.01	2.109	20.51	0.00	6.6	93.4	0.0	-0.69	1.79	0.88	0.79	—	25908	1376	16	682	2	0	0	logfile
✘	6JZo	9898	2023-08-16	2019-05-03	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21405	2657	8	0	12	0	0	logfile
✔	6JXR	9895	2023-08-10	2019-04-24	3.7	3.95	—	3.9	0.008	1.01	0.0	0.06	10.83	0.01	2.273	5.82	0.74	7.2	92.6	0.2	-3.45	0.69	0.78	2.74	3.9	0.004	0.72	0.0	0.04	15.74	0.00	2.115	12.41	0.96	6.5	93.3	0.2	-0.19	1.71	0.66	0.79	2.08	8437	1073	8	0	0	0	0	logfile

• ← previous
• Page 2 of 542
• next →