Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6K15	9905	2022-12-14	2019-05-09	3.4	3.68	—	3.6	0.005	0.96	0.0	0.05	10.23	0.01	1.639	5.00	0.33	8.6	91.3	0.1	-4.21	0.74	0.78	2.17	3.6	0.003	0.68	0.0	0.04	14.97	0.00	2.132	10.19	0.21	8.1	91.9	0.0	-0.23	1.75	0.76	0.81	1.25	21486	2655	14	0	1	0	0	logfile
✔	6K0B	9900	2022-12-15	2019-05-05	4.3	4.49	—	4.2	0.003	0.78	0.0	0.04	14.21	0.01	2.011	5.73	0.66	6.1	93.9	0.0	-3.67	0.84	0.69	—	4.2	0.003	0.67	0.0	0.04	15.17	0.00	2.093	21.43	0.00	7.3	92.6	0.1	-0.56	1.78	0.88	0.79	—	25908	1376	16	682	2	0	0	logfile
✔	6JZo	9898	2022-12-14	2019-05-03	3.28	3.37	—	3.3	0.009	1.18	0.0	0.08	13.27	0.01	1.379	18.92	3.26	2.7	96.9	0.5	-4.84	0.69	0.80	2.74	3.3	0.003	0.63	0.0	0.04	15.95	0.00	2.061	9.50	0.27	4.8	95.2	0.0	0.98	0.74	0.74	0.85	1.35	21405	2657	8	0	12	0	0	logfile
✔	6JXR	9895	2022-12-12	2019-04-24	3.7	3.95	—	3.9	0.008	1.01	0.0	0.06	10.83	0.01	2.273	5.94	0.74	7.2	92.6	0.2	-3.45	0.69	0.78	2.74	3.9	0.003	0.71	0.0	0.04	15.79	0.00	2.119	11.45	0.43	6.5	93.4	0.1	-0.30	1.72	0.66	0.79	2.12	8437	1073	8	0	0	0	0	logfile
✔	6JXC	9893	2022-12-13	2019-04-23	4.1	4.20	—	4.1	0.018	1.71	0.0	0.09	8.99	0.01	2.221	4.88	0.38	9.3	87.7	3.0	-1.28	0.50	0.61	—	4.1	0.003	0.79	0.0	0.04	12.09	0.00	2.114	9.49	0.00	11.6	86.5	1.9	0.33	0.96	0.55	0.69	—	15270	2345	1	0	0	0	0	logfile
✔	6JXA	9892	2022-12-13	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.80	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.003	0.90	0.0	0.04	11.48	0.00	2.173	16.33	0.00	15.8	81.5	2.7	-1.63	0.94	0.65	0.62	—	14100	2244	1	0	0	0	0	logfile
✔	6JX7	9891	2022-12-16	2019-04-22	3.31	3.76	3.45	3.7	0.009	1.20	3.0	0.10	13.96	0.02	2.092	8.88	0.82	12.3	87.4	0.3	-5.20	0.57	0.71	2.29	3.7	0.003	0.67	0.0	0.05	15.60	0.00	2.072	10.56	0.49	10.7	89.3	0.0	-2.30	1.08	0.64	0.83	1.94	32115	3735	60	0	219	0	0	logfile
✔	6KUV	9888	2022-12-13	2019-09-02	4.1	4.13	—	4.1	0.003	0.79	0.0	0.05	10.91	0.01	2.206	6.21	0.28	7.4	92.5	0.2	-4.84	0.69	0.72	—	4.1	0.003	0.75	0.0	0.04	14.41	0.00	2.153	11.43	0.07	8.7	91.2	0.1	-1.35	2.93	0.73	0.77	—	13720	1640	5	23	0	0	0	logfile
✔	6JT2	9885	2022-12-11	2019-04-08	3.8	3.88	—	3.8	0.004	0.74	0.0	0.04	11.14	0.01	1.980	10.39	3.54	4.0	95.7	0.3	-2.54	0.80	0.80	2.23	3.8	0.003	0.69	0.0	0.04	13.43	0.00	1.334	9.98	0.24	3.9	96.1	0.0	-0.22	1.66	0.82	0.81	1.69	8191	1075	4	0	4	0	0	logfile
✔	6JT1	9884	2022-12-12	2019-04-08	3.9	4.00	—	3.9	0.004	0.77	0.0	0.04	12.20	0.00	2.212	10.56	4.62	5.8	93.8	0.4	-2.92	0.77	0.81	2.21	3.9	0.003	0.75	0.0	0.04	14.42	0.00	2.127	12.16	0.44	4.5	95.5	0.0	0.33	1.25	0.81	0.82	1.91	8602	1118	2	0	1	0	0	logfile
✔	6JT0	9883	2022-12-12	2019-04-08	4.0	4.28	—	4.0	0.004	0.71	0.0	0.04	12.21	0.00	2.212	11.27	4.73	5.7	93.9	0.4	-2.84	0.85	0.82	—	4.0	0.003	0.85	0.0	0.05	13.65	0.00	2.222	12.86	0.00	4.6	95.4	0.0	0.33	1.67	0.86	0.82	—	8602	1118	2	0	1	0	0	logfile
✘	6JSi	9882	2022-12-19	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62820	5844	9	0	4044	0	0	logfile
✔	6JQo	9876	2022-12-16	2019-03-31	3.1	3.28	—	3.3	0.010	1.05	0.0	0.25	11.06	0.01	2.337	3.32	0.13	5.3	94.7	0.0	-3.99	0.79	0.87	4.25	3.3	0.003	0.60	0.0	0.04	14.63	0.00	2.086	4.86	0.09	5.0	95.0	0.0	-1.24	1.60	0.78	0.88	3.47	31254	4068	12	0	12	0	0	logfile
✔	6JQN	9875	2022-12-16	2019-03-31	3.1	3.22	—	3.2	0.010	1.01	0.0	0.06	11.61	0.01	2.274	5.78	0.00	6.0	94.0	0.0	-4.15	0.77	0.84	3.79	3.2	0.004	0.63	0.0	0.04	15.20	0.00	2.094	12.01	0.25	4.5	95.5	0.0	-1.18	0.69	0.80	0.87	2.79	31278	4068	12	0	12	0	0	logfile
✔	6JQM	9874	2022-12-16	2019-03-31	3.3	3.54	—	3.5	0.005	0.83	0.0	0.05	10.76	0.01	2.304	5.87	0.06	5.8	94.2	0.0	-4.47	0.76	0.84	3.78	3.5	0.003	0.59	0.0	0.04	14.62	0.00	2.218	10.06	0.13	4.0	96.0	0.0	-1.10	2.69	0.78	0.86	2.80	30936	4068	12	0	6	0	0	logfile
✔	6JQL	9873	2022-12-16	2019-03-31	2.9	3.07	—	3.1	0.004	0.81	0.0	0.05	10.10	0.01	2.305	6.89	0.16	4.8	95.2	0.0	-4.01	0.77	0.84	3.95	3.0	0.005	0.70	0.0	0.04	15.52	0.00	2.103	11.39	1.83	3.9	96.1	0.0	-0.72	1.30	0.78	0.88	3.32	30648	4068	6	0	0	0	0	logfile
✔	6JQ0	9872	2022-12-15	2019-03-28	3.54	4.12	—	4.0	0.007	1.21	0.0	0.06	16.27	0.01	2.235	4.90	0.63	13.0	86.5	0.5	-5.59	0.69	0.85	1.20	4.0	0.003	0.81	0.0	0.05	17.36	0.01	2.125	9.13	0.57	11.9	88.0	0.2	-2.08	0.55	0.65	0.82	0.96	26917	3323	13	0	20	0	0	logfile
✔	6JPU	9871	2022-12-16	2019-03-28	4.27	5.69	—	6.0	0.007	1.03	0.0	0.06	17.27	0.01	1.984	70.18	9.58	9.8	90.1	0.2	-3.97	0.80	0.76	—	5.2	0.006	0.94	0.0	0.05	13.57	0.01	1.778	140.97	0.00	12.6	87.4	0.0	-2.56	1.13	0.80	0.79	—	30378	3462	6	0	0	0	2610	logfile
✔	6JPQ	9870	2022-12-15	2019-03-27	4.44	5.93	—	7.2	0.006	1.13	0.0	0.06	12.18	0.01	2.195	10.56	0.57	9.1	90.9	0.0	-5.01	0.81	0.77	—	6.0	0.003	0.82	0.0	0.05	12.82	0.01	2.120	19.42	0.00	8.0	92.0	0.0	-2.05	1.77	0.82	0.80	—	27768	3462	6	0	0	0	0	logfile
✘	6JPB	9869	2022-12-18	2019-03-26	2.9	3.09	—	3.1	0.015	1.47	3.0	0.12	14.12	0.01	1.739	21.21	4.38	8.5	91.1	0.4	-4.25	0.61	0.77	2.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21989	2694	14	0	35	0	0	logfile

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