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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6K15 | 9905 | 2022-12-14 | 2019-05-09 | 3.4 | 3.68 | — | 3.6 | 0.005 | 0.96 | 0.0 | 0.05 | 10.23 | 0.01 | 1.639 | 5.00 | 0.33 | 8.6 | 91.3 | 0.1 | -4.21 | 0.74 | 0.78 | 2.17 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 14.97 | 0.00 | 2.132 | 10.19 | 0.21 | 8.1 | 91.9 | 0.0 | -0.23 | 1.75 | 0.76 | 0.81 | 1.25 | 21486 | 2655 | 14 | 0 | 1 | 0 | 0 | logfile |
✔ | 6K0B | 9900 | 2022-12-15 | 2019-05-05 | 4.3 | 4.49 | — | 4.2 | 0.003 | 0.78 | 0.0 | 0.04 | 14.21 | 0.01 | 2.011 | 5.73 | 0.66 | 6.1 | 93.9 | 0.0 | -3.67 | 0.84 | 0.69 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 15.17 | 0.00 | 2.093 | 21.43 | 0.00 | 7.3 | 92.6 | 0.1 | -0.56 | 1.78 | 0.88 | 0.79 | — | 25908 | 1376 | 16 | 682 | 2 | 0 | 0 | logfile |
✔ | 6JZo | 9898 | 2022-12-14 | 2019-05-03 | 3.28 | 3.37 | — | 3.3 | 0.009 | 1.18 | 0.0 | 0.08 | 13.27 | 0.01 | 1.379 | 18.92 | 3.26 | 2.7 | 96.9 | 0.5 | -4.84 | 0.69 | 0.80 | 2.74 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 15.95 | 0.00 | 2.061 | 9.50 | 0.27 | 4.8 | 95.2 | 0.0 | 0.98 | 0.74 | 0.74 | 0.85 | 1.35 | 21405 | 2657 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6JXR | 9895 | 2022-12-12 | 2019-04-24 | 3.7 | 3.95 | — | 3.9 | 0.008 | 1.01 | 0.0 | 0.06 | 10.83 | 0.01 | 2.273 | 5.94 | 0.74 | 7.2 | 92.6 | 0.2 | -3.45 | 0.69 | 0.78 | 2.74 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 15.79 | 0.00 | 2.119 | 11.45 | 0.43 | 6.5 | 93.4 | 0.1 | -0.30 | 1.72 | 0.66 | 0.79 | 2.12 | 8437 | 1073 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JXC | 9893 | 2022-12-13 | 2019-04-23 | 4.1 | 4.20 | — | 4.1 | 0.018 | 1.71 | 0.0 | 0.09 | 8.99 | 0.01 | 2.221 | 4.88 | 0.38 | 9.3 | 87.7 | 3.0 | -1.28 | 0.50 | 0.61 | — | 4.1 | 0.003 | 0.79 | 0.0 | 0.04 | 12.09 | 0.00 | 2.114 | 9.49 | 0.00 | 11.6 | 86.5 | 1.9 | 0.33 | 0.96 | 0.55 | 0.69 | — | 15270 | 2345 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JXA | 9892 | 2022-12-13 | 2019-04-23 | 4.3 | 4.65 | — | 4.2 | 0.017 | 1.81 | 3.0 | 0.10 | 9.08 | 0.01 | 1.926 | 29.80 | 2.04 | 12.2 | 79.3 | 8.5 | -2.72 | 0.49 | 0.42 | — | 4.2 | 0.003 | 0.90 | 0.0 | 0.04 | 11.48 | 0.00 | 2.173 | 16.33 | 0.00 | 15.8 | 81.5 | 2.7 | -1.63 | 0.94 | 0.65 | 0.62 | — | 14100 | 2244 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JX7 | 9891 | 2022-12-16 | 2019-04-22 | 3.31 | 3.76 | 3.45 | 3.7 | 0.009 | 1.20 | 3.0 | 0.10 | 13.96 | 0.02 | 2.092 | 8.88 | 0.82 | 12.3 | 87.4 | 0.3 | -5.20 | 0.57 | 0.71 | 2.29 | 3.7 | 0.003 | 0.67 | 0.0 | 0.05 | 15.60 | 0.00 | 2.072 | 10.56 | 0.49 | 10.7 | 89.3 | 0.0 | -2.30 | 1.08 | 0.64 | 0.83 | 1.94 | 32115 | 3735 | 60 | 0 | 219 | 0 | 0 | logfile |
✔ | 6KUV | 9888 | 2022-12-13 | 2019-09-02 | 4.1 | 4.13 | — | 4.1 | 0.003 | 0.79 | 0.0 | 0.05 | 10.91 | 0.01 | 2.206 | 6.21 | 0.28 | 7.4 | 92.5 | 0.2 | -4.84 | 0.69 | 0.72 | — | 4.1 | 0.003 | 0.75 | 0.0 | 0.04 | 14.41 | 0.00 | 2.153 | 11.43 | 0.07 | 8.7 | 91.2 | 0.1 | -1.35 | 2.93 | 0.73 | 0.77 | — | 13720 | 1640 | 5 | 23 | 0 | 0 | 0 | logfile |
✔ | 6JT2 | 9885 | 2022-12-11 | 2019-04-08 | 3.8 | 3.88 | — | 3.8 | 0.004 | 0.74 | 0.0 | 0.04 | 11.14 | 0.01 | 1.980 | 10.39 | 3.54 | 4.0 | 95.7 | 0.3 | -2.54 | 0.80 | 0.80 | 2.23 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 13.43 | 0.00 | 1.334 | 9.98 | 0.24 | 3.9 | 96.1 | 0.0 | -0.22 | 1.66 | 0.82 | 0.81 | 1.69 | 8191 | 1075 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6JT1 | 9884 | 2022-12-12 | 2019-04-08 | 3.9 | 4.00 | — | 3.9 | 0.004 | 0.77 | 0.0 | 0.04 | 12.20 | 0.00 | 2.212 | 10.56 | 4.62 | 5.8 | 93.8 | 0.4 | -2.92 | 0.77 | 0.81 | 2.21 | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 14.42 | 0.00 | 2.127 | 12.16 | 0.44 | 4.5 | 95.5 | 0.0 | 0.33 | 1.25 | 0.81 | 0.82 | 1.91 | 8602 | 1118 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 6JT0 | 9883 | 2022-12-12 | 2019-04-08 | 4.0 | 4.28 | — | 4.0 | 0.004 | 0.71 | 0.0 | 0.04 | 12.21 | 0.00 | 2.212 | 11.27 | 4.73 | 5.7 | 93.9 | 0.4 | -2.84 | 0.85 | 0.82 | — | 4.0 | 0.003 | 0.85 | 0.0 | 0.05 | 13.65 | 0.00 | 2.222 | 12.86 | 0.00 | 4.6 | 95.4 | 0.0 | 0.33 | 1.67 | 0.86 | 0.82 | — | 8602 | 1118 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2022-12-19 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✔ | 6JQo | 9876 | 2022-12-16 | 2019-03-31 | 3.1 | 3.28 | — | 3.3 | 0.010 | 1.05 | 0.0 | 0.25 | 11.06 | 0.01 | 2.337 | 3.32 | 0.13 | 5.3 | 94.7 | 0.0 | -3.99 | 0.79 | 0.87 | 4.25 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 14.63 | 0.00 | 2.086 | 4.86 | 0.09 | 5.0 | 95.0 | 0.0 | -1.24 | 1.60 | 0.78 | 0.88 | 3.47 | 31254 | 4068 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 6JQN | 9875 | 2022-12-16 | 2019-03-31 | 3.1 | 3.22 | — | 3.2 | 0.010 | 1.01 | 0.0 | 0.06 | 11.61 | 0.01 | 2.274 | 5.78 | 0.00 | 6.0 | 94.0 | 0.0 | -4.15 | 0.77 | 0.84 | 3.79 | 3.2 | 0.004 | 0.63 | 0.0 | 0.04 | 15.20 | 0.00 | 2.094 | 12.01 | 0.25 | 4.5 | 95.5 | 0.0 | -1.18 | 0.69 | 0.80 | 0.87 | 2.79 | 31278 | 4068 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 6JQM | 9874 | 2022-12-16 | 2019-03-31 | 3.3 | 3.54 | — | 3.5 | 0.005 | 0.83 | 0.0 | 0.05 | 10.76 | 0.01 | 2.304 | 5.87 | 0.06 | 5.8 | 94.2 | 0.0 | -4.47 | 0.76 | 0.84 | 3.78 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 14.62 | 0.00 | 2.218 | 10.06 | 0.13 | 4.0 | 96.0 | 0.0 | -1.10 | 2.69 | 0.78 | 0.86 | 2.80 | 30936 | 4068 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6JQL | 9873 | 2022-12-16 | 2019-03-31 | 2.9 | 3.07 | — | 3.1 | 0.004 | 0.81 | 0.0 | 0.05 | 10.10 | 0.01 | 2.305 | 6.89 | 0.16 | 4.8 | 95.2 | 0.0 | -4.01 | 0.77 | 0.84 | 3.95 | 3.0 | 0.005 | 0.70 | 0.0 | 0.04 | 15.52 | 0.00 | 2.103 | 11.39 | 1.83 | 3.9 | 96.1 | 0.0 | -0.72 | 1.30 | 0.78 | 0.88 | 3.32 | 30648 | 4068 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JQ0 | 9872 | 2022-12-15 | 2019-03-28 | 3.54 | 4.12 | — | 4.0 | 0.007 | 1.21 | 0.0 | 0.06 | 16.27 | 0.01 | 2.235 | 4.90 | 0.63 | 13.0 | 86.5 | 0.5 | -5.59 | 0.69 | 0.85 | 1.20 | 4.0 | 0.003 | 0.81 | 0.0 | 0.05 | 17.36 | 0.01 | 2.125 | 9.13 | 0.57 | 11.9 | 88.0 | 0.2 | -2.08 | 0.55 | 0.65 | 0.82 | 0.96 | 26917 | 3323 | 13 | 0 | 20 | 0 | 0 | logfile |
✔ | 6JPU | 9871 | 2022-12-16 | 2019-03-28 | 4.27 | 5.69 | — | 6.0 | 0.007 | 1.03 | 0.0 | 0.06 | 17.27 | 0.01 | 1.984 | 70.18 | 9.58 | 9.8 | 90.1 | 0.2 | -3.97 | 0.80 | 0.76 | — | 5.2 | 0.006 | 0.94 | 0.0 | 0.05 | 13.57 | 0.01 | 1.778 | 140.97 | 0.00 | 12.6 | 87.4 | 0.0 | -2.56 | 1.13 | 0.80 | 0.79 | — | 30378 | 3462 | 6 | 0 | 0 | 0 | 2610 | logfile |
✔ | 6JPQ | 9870 | 2022-12-15 | 2019-03-27 | 4.44 | 5.93 | — | 7.2 | 0.006 | 1.13 | 0.0 | 0.06 | 12.18 | 0.01 | 2.195 | 10.56 | 0.57 | 9.1 | 90.9 | 0.0 | -5.01 | 0.81 | 0.77 | — | 6.0 | 0.003 | 0.82 | 0.0 | 0.05 | 12.82 | 0.01 | 2.120 | 19.42 | 0.00 | 8.0 | 92.0 | 0.0 | -2.05 | 1.77 | 0.82 | 0.80 | — | 27768 | 3462 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JPB | 9869 | 2022-12-18 | 2019-03-26 | 2.9 | 3.09 | — | 3.1 | 0.015 | 1.47 | 3.0 | 0.12 | 14.12 | 0.01 | 1.739 | 21.21 | 4.38 | 8.5 | 91.1 | 0.4 | -4.25 | 0.61 | 0.77 | 2.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21989 | 2694 | 14 | 0 | 35 | 0 | 0 | logfile |