Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6K33	9908	2022-07-06	2019-05-16	2.74	2.88	—	2.8	0.012	1.41	3.0	0.07	19.74	0.02	1.204	12.25	6.41	6.1	93.5	0.5	-4.27	0.75	0.74	2.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	137634	12681	112	0	759	21	0	logfile
✘	6K32	9907	2022-07-03	2019-05-16	3.2	3.73	—	3.8	0.008	1.13	1.0	0.07	11.31	0.01	0.964	10.28	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	61364	7723	10	8	6	0	0	logfile
✔	6K1H	9906	2022-07-03	2019-05-10	3.52	3.52	—	3.6	0.007	1.14	0.0	0.06	9.94	0.01	2.051	6.10	0.75	10.6	89.4	0.0	-6.37	0.60	0.77	2.05	3.5	0.005	0.83	0.0	0.04	15.20	0.00	2.057	14.03	0.83	9.5	90.5	0.0	-2.57	1.68	0.62	0.80	1.73	11556	1533	9	0	3	0	0	logfile
✔	6K15	9905	2022-07-05	2019-05-09	3.4	3.68	—	3.6	0.005	0.96	0.0	0.05	10.23	0.01	1.639	5.00	0.33	8.6	91.3	0.1	-4.21	0.74	0.78	2.17	3.6	0.008	0.97	1.0	0.04	14.90	0.00	1.908	10.28	0.37	7.3	92.7	0.0	-0.09	1.38	0.76	0.81	1.11	21486	2655	14	0	1	0	0	logfile
✔	6K0B	9900	2022-07-05	2019-05-05	4.3	4.49	—	4.2	0.003	0.78	0.0	0.04	14.21	0.01	2.011	5.73	0.66	6.1	93.9	0.0	-3.67	0.84	0.69	—	4.2	0.003	0.67	0.0	0.04	15.27	0.01	2.106	19.77	0.00	6.9	93.1	0.0	-0.87	1.79	0.88	0.79	—	25908	1376	16	682	2	0	0	logfile
✘	6JZo	9898	2022-07-05	2019-05-03	3.28	3.37	—	3.3	0.008	1.17	0.0	0.08	12.66	0.01	1.214	18.92	3.26	2.7	96.9	0.5	-4.84	0.69	0.80	2.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21405	2657	8	0	12	0	0	logfile
✔	6JXR	9895	2022-07-03	2019-04-24	3.7	3.95	—	3.9	0.008	1.01	0.0	0.06	10.83	0.01	2.273	5.94	0.74	7.2	92.6	0.2	-3.45	0.69	0.78	2.74	3.9	0.004	0.71	0.0	0.04	15.86	0.01	2.134	11.63	0.64	6.7	93.2	0.1	-0.19	1.72	0.67	0.80	2.26	8437	1073	8	0	0	0	0	logfile
✔	6JXC	9893	2022-07-04	2019-04-23	4.1	4.20	—	4.1	0.018	1.71	0.0	0.09	8.99	0.01	2.221	4.88	0.38	9.3	87.7	3.0	-1.28	0.50	0.61	—	4.1	0.003	0.81	0.0	0.04	12.18	0.00	2.097	10.81	0.00	12.1	86.1	1.8	0.15	0.97	0.55	0.70	—	15270	2345	1	0	0	0	0	logfile
✔	6JXA	9892	2022-07-04	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.80	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.003	0.90	0.0	0.04	11.46	0.01	2.176	16.41	0.00	15.9	81.4	2.7	-1.63	0.95	0.65	0.61	—	14100	2244	1	0	0	0	0	logfile
✔	6JX7	9891	2022-07-06	2019-04-22	3.31	3.76	3.45	3.7	0.009	1.20	3.0	0.10	13.96	0.02	2.092	8.88	0.82	12.3	87.4	0.3	-5.20	0.57	0.71	2.29	3.7	0.003	0.69	0.0	0.05	15.69	0.00	2.076	10.75	0.61	11.3	88.7	0.0	-2.44	0.64	0.64	0.83	1.93	32115	3735	6	0	219	0	0	logfile
✔	6JV2	9889	2022-07-03	2019-04-15	4.4	5.59	—	4.4	0.011	1.30	1.0	0.06	16.74	0.01	2.116	19.41	1.92	13.3	86.5	0.3	-4.61	0.83	0.83	—	4.4	0.004	0.75	0.0	0.04	14.49	0.00	1.924	23.92	0.10	11.3	88.6	0.1	-1.79	0.70	0.82	0.82	—	111080	14564	16	0	24	0	0	logfile
✔	6KUV	9888	2022-07-04	2019-09-02	4.1	4.13	—	4.1	0.003	0.79	0.0	0.05	10.91	0.01	2.206	6.21	0.28	7.4	92.5	0.2	-4.84	0.69	0.72	—	4.1	0.003	0.72	0.0	0.04	14.36	0.00	2.169	10.15	0.00	7.4	92.5	0.1	-1.05	2.92	0.73	0.76	—	13720	1640	5	23	0	0	0	logfile
✔	6JT2	9885	2022-07-03	2019-04-08	3.8	3.88	—	3.8	0.004	0.74	0.0	0.04	11.14	0.01	1.980	10.39	3.54	4.0	95.7	0.3	-2.54	0.80	0.80	2.23	3.8	0.003	0.69	0.0	0.04	13.63	0.01	1.284	10.39	0.12	3.5	96.5	0.0	-0.11	1.66	0.82	0.81	1.53	8191	1075	4	0	4	0	0	logfile
✔	6JT1	9884	2022-07-03	2019-04-08	3.9	4.00	—	3.9	0.004	0.77	0.0	0.04	12.20	0.00	2.212	10.56	4.62	5.8	93.8	0.4	-2.92	0.77	0.81	2.21	3.9	0.003	0.75	0.0	0.04	14.42	0.00	2.127	12.20	0.44	4.5	95.5	0.0	0.33	1.25	0.81	0.82	1.91	8602	1118	2	0	1	0	0	logfile
✔	6JT0	9883	2022-07-03	2019-04-08	4.0	4.28	—	4.0	0.004	0.71	0.0	0.04	12.21	0.00	2.212	11.27	4.73	5.7	93.9	0.4	-2.84	0.85	0.82	—	4.0	0.003	0.80	0.0	0.04	13.89	0.00	2.219	12.67	0.22	4.8	95.2	0.0	0.36	1.66	0.86	0.82	—	8602	1118	2	0	1	0	0	logfile
✘	6JSi	9882	2022-07-03	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62820	5844	9	0	4044	0	0	logfile
✔	6JRS	9880	2022-07-03	2019-04-05	3.7	3.86	—	3.7	0.010	1.08	0.0	0.06	16.39	0.01	2.225	8.82	0.90	12.4	87.2	0.3	-5.87	0.74	0.80	1.78	3.7	0.003	0.72	0.0	0.04	17.17	0.00	2.113	12.79	0.45	9.6	90.3	0.1	-2.42	0.54	0.73	0.79	1.09	112168	14652	20	0	24	0	0	logfile
✔	6JRR	9879	2022-07-03	2019-04-05	3.9	4.09	—	3.9	0.010	1.14	4.0	0.06	15.90	0.01	1.827	8.53	0.80	10.2	89.5	0.2	-5.20	0.76	0.81	1.54	3.9	0.004	0.74	0.0	0.04	17.00	0.01	2.150	13.53	0.48	9.8	90.1	0.1	-1.81	0.59	0.76	0.81	0.89	109132	14268	12	0	16	0	0	logfile
✘	6JQo	9876	2022-07-06	2019-03-31	3.1	3.28	—	3.3	0.005	0.87	0.0	0.05	10.32	0.01	1.215	3.32	0.13	5.3	94.7	0.0	-3.99	0.79	0.87	4.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31254	4068	12	0	12	0	0	logfile
✘	6JQN	9875	2022-07-06	2019-03-31	3.1	3.22	—	3.2	0.006	0.88	0.0	0.05	10.43	0.01	1.214	5.78	0.00	6.0	94.0	0.0	-4.15	0.77	0.84	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31278	4068	12	0	12	0	0	logfile

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