Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6K3o	9910	2021-09-05	2019-05-21	3.4	3.86	—	3.8	0.003	0.56	0.0	0.03	14.46	0.00	1.077	15.94	0.00	3.8	96.2	0.0	-1.52	0.79	0.82	3.15	3.8	0.003	0.67	0.0	0.03	17.15	0.00	2.087	6.14	0.30	1.8	98.2	0.0	4.16	0.51	0.76	0.80	2.28	31508	3790	48	0	36	0	0	logfile
✘	6K3i	9909	2021-09-06	2019-05-19	2.86	3.51	3.53	3.6	0.006	0.87	0.0	0.06	13.63	0.01	2.181	4.13	0.21	7.9	92.1	0.0	-3.25	0.56	0.81	2.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	195294	26532	66	0	0	0	0	logfile
✘	6K33	9908	2021-09-05	2019-05-16	2.74	2.88	—	2.8	0.011	1.32	3.0	0.07	20.20	0.01	1.204	12.16	6.41	6.1	93.5	0.5	-4.27	0.75	0.74	2.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	137634	12681	112	0	759	21	0	logfile
✔	6K32	9907	2021-09-03	2019-05-16	3.2	3.73	—	3.8	0.009	1.19	1.0	0.08	11.34	0.01	1.345	10.08	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.004	0.76	0.0	0.05	16.51	0.01	1.348	11.88	0.64	5.8	94.2	0.1	-1.28	1.37	0.31	0.82	2.35	61364	7723	10	8	6	0	0	logfile
✔	6K1H	9906	2021-09-03	2019-05-10	3.52	3.52	—	3.6	0.007	1.16	0.0	0.06	9.94	0.01	2.051	6.10	0.75	10.6	89.4	0.0	-6.37	0.60	0.77	2.05	3.5	0.012	1.20	1.0	0.04	14.96	0.00	2.082	13.77	0.42	8.8	91.2	0.0	-2.56	2.89	0.63	0.80	1.68	11556	1533	9	0	3	0	0	logfile
✔	6K15	9905	2021-09-04	2019-05-09	3.4	3.68	—	3.6	0.005	0.96	0.0	0.05	10.23	0.01	1.639	5.02	0.33	8.6	91.3	0.1	-4.21	0.74	0.78	2.17	3.6	0.009	0.96	1.0	0.04	14.98	0.00	2.138	9.26	0.66	7.8	92.2	0.0	-0.02	1.76	0.76	0.82	1.24	21486	2655	14	0	1	0	0	logfile
✔	6K0B	9900	2021-09-04	2019-05-05	4.3	4.49	—	4.2	0.003	0.78	0.0	0.04	14.21	0.01	2.011	5.73	0.66	6.1	93.9	0.0	-3.67	0.84	0.69	—	4.2	0.003	0.69	0.0	0.04	15.74	0.00	2.036	22.42	0.00	7.9	92.1	0.0	-0.96	1.89	0.88	0.80	—	25908	1376	16	682	2	0	0	logfile
✘	6JZo	9898	2021-09-04	2019-05-03	3.28	3.37	—	3.3	0.017	1.52	0.0	0.18	13.85	0.01	1.379	18.67	3.26	2.7	96.9	0.5	-4.84	0.69	0.80	2.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21405	2657	8	0	12	0	0	logfile
✔	6JXR	9895	2021-09-02	2019-04-24	3.7	3.95	—	3.9	0.007	1.02	0.0	0.06	10.83	0.01	2.273	5.82	0.74	7.2	92.6	0.2	-3.45	0.69	0.78	2.74	3.9	0.004	0.71	0.0	0.04	15.93	0.00	2.075	11.87	0.64	6.6	93.3	0.1	-0.15	1.74	0.67	0.80	2.04	8437	1073	8	0	0	0	0	logfile
✔	6JXC	9893	2021-09-03	2019-04-23	4.1	4.20	—	4.1	0.018	1.71	0.0	0.09	8.99	0.01	2.221	3.96	0.38	9.3	87.7	3.0	-1.28	0.50	0.61	—	4.1	0.004	0.86	0.0	0.04	12.57	0.00	2.029	12.90	0.00	13.6	84.4	2.0	-0.14	1.08	0.56	0.70	—	15270	2345	1	0	0	0	0	logfile
✔	6JXA	9892	2021-09-03	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	28.59	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.1	0.005	1.04	0.0	0.05	11.50	0.01	2.125	24.11	0.00	18.4	78.8	2.9	-2.88	1.81	0.66	0.65	—	14100	2244	1	0	0	0	0	logfile
✔	6JX7	9891	2021-09-05	2019-04-22	3.31	3.76	3.45	3.7	0.009	1.20	3.0	0.10	13.96	0.02	2.092	8.84	0.82	12.3	87.4	0.3	-5.20	0.57	0.71	2.29	3.7	0.004	0.68	0.0	0.05	15.80	0.00	2.055	10.79	0.46	11.8	88.2	0.0	-2.28	0.68	0.67	0.84	1.85	32115	3735	6	0	219	0	0	logfile
✔	6JV2	9889	2021-09-03	2019-04-15	4.4	5.59	—	4.4	0.011	1.30	1.0	0.06	16.74	0.01	2.116	19.28	1.92	13.3	86.5	0.3	-4.61	0.83	0.83	—	4.4	0.005	0.78	0.0	0.04	14.49	0.01	1.947	27.13	0.10	12.5	87.4	0.1	-1.80	0.75	0.83	0.83	—	111080	14564	16	0	24	0	0	logfile
✔	6KUV	9888	2021-09-03	2019-09-02	4.1	4.13	—	4.1	0.003	0.79	0.0	0.05	10.91	0.01	2.206	6.18	0.28	7.4	92.5	0.2	-4.84	0.69	0.72	—	4.1	0.003	0.70	0.0	0.04	14.42	0.00	2.154	9.67	0.07	7.4	92.5	0.1	-0.77	2.95	0.73	0.76	—	13720	1640	5	23	0	0	0	logfile
✔	6JT2	9885	2021-09-02	2019-04-08	3.8	3.88	—	3.8	0.006	0.74	0.0	0.04	11.18	0.01	1.980	10.08	3.54	4.0	95.7	0.3	-2.54	0.80	0.80	2.23	3.8	0.003	0.72	0.0	0.04	13.82	0.00	1.534	10.46	0.24	3.2	96.8	0.0	-0.13	1.68	0.82	0.81	1.60	8191	1075	4	0	4	0	0	logfile
✔	6JT1	9884	2021-09-02	2019-04-08	3.9	4.00	—	3.9	0.004	0.77	0.0	0.04	12.20	0.00	2.212	10.21	4.62	5.8	93.8	0.4	-2.92	0.77	0.81	2.21	3.9	0.003	0.77	0.0	0.04	14.43	0.00	2.143	11.38	0.44	4.6	95.4	0.0	0.30	1.26	0.81	0.82	2.06	8602	1118	2	0	1	0	0	logfile
✘	6JT0	9883	2021-09-02	2019-04-08	4.0	4.28	—	4.0	0.004	0.71	0.0	0.04	12.21	0.00	2.212	10.91	4.73	5.7	93.9	0.4	-2.84	0.85	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8602	1118	2	0	1	0	0	logfile
✔	6JSi	9882	2021-09-03	2019-04-08	4.7	4.70	—	4.6	0.007	1.49	0.0	0.06	15.33	0.01	2.231	10.63	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	4.6	0.003	0.87	0.0	0.04	12.86	0.01	2.113	15.04	0.00	20.6	78.3	1.1	-3.82	0.76	0.63	0.68	—	62820	5844	9	0	4044	0	0	logfile
✔	6JRS	9880	2021-09-03	2019-04-05	3.7	3.86	—	3.7	0.010	1.07	0.0	0.06	16.39	0.01	2.225	8.70	0.90	12.4	87.2	0.3	-5.87	0.74	0.80	1.78	3.7	0.003	0.72	0.0	0.04	17.21	0.00	2.112	12.42	0.28	8.9	91.0	0.1	-2.42	0.57	0.73	0.79	1.05	112168	14652	20	0	24	0	0	logfile
✔	6JRR	9879	2021-09-02	2019-04-05	3.9	4.09	—	3.9	0.010	1.13	4.0	0.06	15.90	0.01	1.827	8.45	0.80	10.2	89.5	0.2	-5.20	0.76	0.81	1.54	3.9	0.003	0.74	0.0	0.04	17.04	0.01	2.148	12.36	0.53	8.6	91.3	0.1	-1.43	0.65	0.76	0.81	0.84	109132	14268	12	0	16	0	0	logfile

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