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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6JPB | 9869 | 2023-04-26 | 2019-03-26 | 2.9 | 3.09 | — | 3.1 | 0.015 | 1.48 | 3.0 | 0.12 | 13.70 | 0.01 | 1.739 | 21.16 | 4.38 | 8.5 | 91.1 | 0.4 | -4.25 | 0.61 | 0.77 | 2.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21989 | 2694 | 14 | 0 | 35 | 0 | 0 | logfile |
✘ | 6JPA | 9868 | 2023-04-26 | 2019-03-26 | 2.6 | 2.76 | — | 2.8 | 0.013 | 1.51 | 3.0 | 0.12 | 17.16 | 0.01 | 1.921 | 38.35 | 11.40 | 8.8 | 89.5 | 1.7 | -3.83 | 0.54 | 0.61 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22232 | 2694 | 14 | 0 | 42 | 0 | 0 | logfile |
✘ | 6JP8 | 9867 | 2023-04-26 | 2019-03-26 | 2.7 | 2.51 | — | 2.6 | 0.013 | 1.48 | 8.0 | 0.12 | 14.01 | 0.01 | 1.877 | 25.96 | 6.07 | 7.2 | 92.3 | 0.5 | -4.05 | 0.38 | 0.52 | 1.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21801 | 2694 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 6JP5 | 9866 | 2023-04-26 | 2019-03-25 | 2.9 | 3.03 | — | 3.1 | 0.016 | 1.54 | 4.0 | 0.13 | 14.11 | 0.01 | 1.921 | 28.83 | 6.11 | 7.7 | 91.7 | 0.6 | -3.65 | 0.56 | 0.62 | 2.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22068 | 2694 | 14 | 0 | 39 | 0 | 0 | logfile |
✔ | 6JNF | 9851 | 2023-04-20 | 2019-03-14 | 3.81 | 3.96 | 3.73 | 4.0 | 0.009 | 1.23 | 0.0 | 0.06 | 17.14 | 0.01 | 2.304 | 5.24 | 1.02 | 16.7 | 83.3 | 0.0 | -6.16 | 0.64 | 0.82 | 1.38 | 4.0 | 0.003 | 0.91 | 0.0 | 0.05 | 17.91 | 0.00 | 2.133 | 11.24 | 0.64 | 10.5 | 89.5 | 0.0 | -2.83 | 1.47 | 0.67 | 0.82 | 1.30 | 7271 | 924 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 6JMR | 9850 | 2023-04-21 | 2019-03-13 | 4.1 | 4.26 | 4.05 | 4.1 | 0.007 | 1.06 | 0.0 | 0.06 | 14.05 | 0.01 | 2.239 | 7.77 | 0.56 | 7.1 | 92.8 | 0.1 | -4.07 | 0.83 | 0.78 | — | 4.1 | 0.005 | 0.78 | 0.0 | 0.05 | 13.20 | 0.01 | 2.050 | 16.89 | 0.00 | 8.5 | 91.5 | 0.0 | -2.29 | 0.77 | 0.84 | 0.79 | — | 9809 | 1223 | 7 | 0 | 69 | 0 | 0 | logfile |
✔ | 6JMQ | 9849 | 2023-04-21 | 2019-03-13 | 3.31 | 3.52 | 3.25 | 3.5 | 0.005 | 0.96 | 0.0 | 0.05 | 13.84 | 0.01 | 2.293 | 3.84 | 0.29 | 4.3 | 95.6 | 0.1 | -5.09 | 0.71 | 0.79 | 2.84 | 3.5 | 0.004 | 0.72 | 0.0 | 0.04 | 15.38 | 0.00 | 2.137 | 8.85 | 0.77 | 4.8 | 95.2 | 0.0 | -1.38 | 1.45 | 0.74 | 0.83 | 2.58 | 9950 | 1223 | 7 | 0 | 74 | 0 | 0 | logfile |
✔ | 6JND | 9848 | 2023-04-19 | 2019-03-14 | 3.9 | 3.92 | — | 3.9 | 0.006 | 0.82 | 0.0 | 0.05 | 15.64 | 0.01 | 2.316 | 3.79 | 11.73 | 5.8 | 94.2 | 0.0 | -5.73 | 0.43 | 0.77 | 1.85 | 3.9 | 0.004 | 0.65 | 0.0 | 0.05 | 15.55 | 0.00 | 2.233 | 8.48 | 0.29 | 4.3 | 95.7 | 0.0 | -0.90 | 1.27 | 0.48 | 0.87 | 2.03 | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6JNC | 9847 | 2023-04-20 | 2019-03-14 | 3.7 | 3.76 | — | 3.8 | 0.009 | 0.87 | 0.0 | 0.05 | 14.72 | 0.01 | 2.304 | 3.18 | 9.09 | 4.8 | 95.2 | 0.0 | -5.69 | 0.46 | 0.78 | 1.61 | 3.8 | 0.004 | 0.61 | 0.0 | 0.05 | 16.03 | 0.00 | 2.240 | 5.61 | 0.59 | 3.8 | 96.2 | 0.0 | -1.17 | 1.78 | 0.52 | 0.88 | 2.42 | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 6JiY | 9837 | 2023-04-22 | 2019-02-24 | 3.9 | 4.05 | — | 3.9 | 0.008 | 1.06 | 1.0 | 0.05 | 15.49 | 0.01 | 2.203 | 7.76 | 0.47 | 12.2 | 87.5 | 0.2 | -5.76 | 0.73 | 0.78 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115288 | 15056 | 20 | 0 | 32 | 0 | 0 | logfile |
✘ | 6JiU | 9836 | 2023-04-21 | 2019-02-23 | 4.2 | 4.52 | — | 4.2 | 0.006 | 1.01 | 9.0 | 0.05 | 15.68 | 0.01 | 2.218 | 10.69 | 0.51 | 10.3 | 89.5 | 0.2 | -5.44 | 0.78 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112212 | 14684 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 6Jii | 9834 | 2023-04-22 | 2019-02-21 | 4.2 | 4.38 | — | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 11.41 | 0.01 | 2.208 | 7.63 | 0.57 | 11.2 | 88.4 | 0.4 | -4.07 | 0.78 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115028 | 15012 | 16 | 0 | 16 | 0 | 0 | logfile |
✘ | 6Ji8 | 9833 | 2023-04-22 | 2019-02-20 | 3.6 | 3.80 | — | 3.7 | 0.010 | 1.26 | 8.0 | 0.06 | 11.98 | 0.01 | 2.196 | 8.60 | 1.03 | 10.5 | 89.0 | 0.5 | -4.77 | 0.73 | 0.77 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115060 | 15024 | 16 | 0 | 4 | 0 | 0 | logfile |
✔ | 6Ji1 | 9832 | 2023-04-23 | 2019-02-19 | 4.1 | 4.20 | — | 4.1 | 0.010 | 1.26 | 0.0 | 0.06 | 11.77 | 0.01 | 2.250 | 7.50 | 0.57 | 11.2 | 83.5 | 5.3 | -4.78 | 0.61 | 0.71 | — | 4.1 | 0.004 | 0.82 | 0.0 | 0.04 | 12.95 | 0.01 | 2.136 | 13.76 | 0.00 | 9.5 | 89.9 | 0.7 | -1.24 | 0.85 | 0.58 | 0.72 | — | 13992 | 1848 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Ji0 | 9831 | 2023-04-21 | 2019-02-19 | 4.2 | 4.40 | — | 4.2 | 0.007 | 1.15 | 0.0 | 0.06 | 11.77 | 0.01 | 2.204 | 7.43 | 0.86 | 12.9 | 86.9 | 0.3 | -4.44 | 0.73 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109772 | 14332 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 6JHN | 9826 | 2023-04-21 | 2019-02-18 | 4.5 | 7.49 | — | 4.4 | 0.010 | 1.23 | 0.0 | 0.06 | 16.52 | 0.01 | 2.114 | 19.26 | 1.44 | 13.9 | 85.8 | 0.3 | -4.27 | 0.85 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109488 | 14332 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6JH6 | 9825 | 2023-04-20 | 2019-02-17 | 4.8 | 5.31 | — | 4.8 | 0.006 | 1.07 | 1.0 | 0.05 | 11.37 | 0.01 | 2.197 | 12.11 | 0.58 | 10.8 | 88.9 | 0.3 | -4.03 | 0.79 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108924 | 14244 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 6JGZ | 9824 | 2023-04-21 | 2019-02-16 | 4.6 | 4.96 | — | 4.6 | 0.007 | 1.13 | 0.0 | 0.06 | 11.54 | 0.01 | 2.171 | 11.98 | 0.73 | 11.3 | 88.3 | 0.4 | -4.06 | 0.78 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109824 | 14368 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 6JD1 | 9801 | 2023-04-22 | 2019-01-30 | 3.38 | 4.55 | — | 3.9 | 0.013 | 1.00 | 0.0 | 0.05 | 14.90 | 0.00 | 2.005 | 6.39 | 0.00 | 7.3 | 92.7 | 0.0 | -4.95 | 0.85 | 0.70 | 1.18 | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 15.75 | 0.00 | 1.770 | 17.72 | 0.50 | 8.6 | 91.4 | 0.0 | -2.50 | 1.31 | 0.88 | 0.85 | 1.75 | 63427 | 3953 | 36 | 0 | 60 | 192 | 31469 | logfile |
✔ | 6JCZ | 9800 | 2023-04-22 | 2019-01-30 | 3.35 | 4.22 | — | 3.7 | 0.006 | 0.81 | 0.0 | 0.04 | 15.49 | 0.00 | 1.670 | 3.80 | 0.00 | 6.8 | 93.2 | 0.0 | -5.41 | 0.85 | 0.74 | 2.43 | 3.8 | 0.005 | 0.68 | 0.0 | 0.04 | 16.54 | 0.00 | 1.764 | 10.95 | 0.06 | 6.9 | 93.1 | 0.0 | -2.78 | 2.63 | 0.87 | 0.85 | 2.58 | 63476 | 3959 | 36 | 0 | 48 | 99 | 31525 | logfile |