Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6JNX	9852	2023-08-22	2019-03-18	4.08	4.16	—	4.1	0.012	1.23	0.0	0.06	16.11	0.01	1.858	11.37	0.90	7.7	92.0	0.3	-3.99	0.61	0.68	—	4.1	0.005	0.79	0.0	0.05	16.88	0.00	1.902	12.21	0.03	7.8	92.1	0.1	-1.21	1.62	0.71	0.80	—	32639	3771	12	144	3	0	0	logfile
✔	6JNF	9851	2023-08-10	2019-03-14	3.81	3.96	3.73	4.0	0.009	1.23	0.0	0.06	17.14	0.01	2.304	5.24	1.02	16.7	83.3	0.0	-6.16	0.64	0.82	1.38	4.0	0.003	0.91	0.0	0.05	17.91	0.00	2.133	11.24	0.64	10.5	89.5	0.0	-2.83	1.47	0.67	0.82	1.30	7271	924	11	0	1	0	0	logfile
✔	6JMR	9850	2023-08-11	2019-03-13	4.1	4.26	4.05	4.1	0.007	1.06	0.0	0.06	14.05	0.01	2.239	7.77	0.56	7.1	92.8	0.1	-4.07	0.83	0.78	—	4.1	0.005	0.78	0.0	0.05	13.20	0.01	2.050	16.89	0.00	8.5	91.5	0.0	-2.29	0.77	0.84	0.79	—	9809	1223	7	0	69	0	0	logfile
✔	6JMQ	9849	2023-08-11	2019-03-13	3.31	3.52	3.25	3.5	0.005	0.96	0.0	0.05	13.84	0.01	2.293	3.84	0.29	4.3	95.6	0.1	-5.09	0.71	0.79	2.84	3.5	0.004	0.72	0.0	0.04	15.38	0.00	2.137	8.85	0.77	4.8	95.2	0.0	-1.38	1.45	0.74	0.83	2.58	9950	1223	7	0	74	0	0	logfile
✔	6JND	9848	2023-08-09	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.64	0.01	2.316	3.79	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	3.9	0.004	0.65	0.0	0.05	15.55	0.00	2.233	8.48	0.29	4.3	95.7	0.0	-0.90	1.27	0.48	0.87	2.03	3294	419	1	0	1	0	0	logfile
✔	6JNC	9847	2023-08-09	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.18	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.004	0.61	0.0	0.05	16.03	0.00	2.240	5.61	0.59	3.8	96.2	0.0	-1.17	1.78	0.52	0.88	2.42	3294	419	1	0	1	0	0	logfile
✔	6K72	9841	2023-08-22	2019-06-05	4.6	4.68	—	4.6	0.006	1.30	0.0	0.07	12.85	0.01	2.168	10.56	1.37	14.0	85.9	0.1	-5.39	0.74	0.72	—	4.6	0.004	0.88	0.0	0.05	13.31	0.01	2.123	22.61	0.00	13.5	86.5	0.0	-3.49	0.75	0.75	0.73	—	32731	4264	14	0	0	0	0	logfile
✘	6JiY	9837	2023-08-12	2019-02-24	3.9	4.05	—	3.9	0.008	1.06	1.0	0.05	15.49	0.01	2.203	7.76	0.47	12.2	87.5	0.2	-5.76	0.73	0.78	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	115288	15056	20	0	32	0	0	logfile
✘	6JiU	9836	2023-08-11	2019-02-23	4.2	4.52	—	4.2	0.006	1.01	9.0	0.05	15.68	0.01	2.218	10.69	0.51	10.3	89.5	0.2	-5.44	0.78	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112212	14684	20	0	24	0	0	logfile
✘	6Jii	9834	2023-08-12	2019-02-21	4.2	4.38	—	4.1	0.008	1.12	0.0	0.06	11.41	0.01	2.208	7.63	0.57	11.2	88.4	0.4	-4.07	0.78	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	115028	15012	16	0	16	0	0	logfile
✘	6Ji8	9833	2023-08-12	2019-02-20	3.6	3.80	—	3.7	0.010	1.26	8.0	0.06	11.98	0.01	2.196	8.60	1.03	10.5	89.0	0.5	-4.77	0.73	0.77	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	115060	15024	16	0	4	0	0	logfile
✔	6Ji1	9832	2023-08-13	2019-02-19	4.1	4.20	—	4.1	0.010	1.26	0.0	0.06	11.77	0.01	2.250	7.50	0.57	11.2	83.5	5.3	-4.78	0.61	0.71	—	4.1	0.004	0.82	0.0	0.04	12.95	0.01	2.136	13.76	0.00	9.5	89.9	0.7	-1.24	0.85	0.58	0.72	—	13992	1848	4	0	0	0	0	logfile
✘	6Ji0	9831	2023-08-10	2019-02-19	4.2	4.40	—	4.2	0.007	1.15	0.0	0.06	11.77	0.01	2.204	7.43	0.86	12.9	86.9	0.3	-4.44	0.73	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109772	14332	12	0	16	0	0	logfile
✘	6JHN	9826	2023-08-10	2019-02-18	4.5	7.49	—	4.4	0.010	1.23	0.0	0.06	16.52	0.01	2.114	19.26	1.44	13.9	85.8	0.3	-4.27	0.85	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109488	14332	12	0	12	0	0	logfile
✘	6JH6	9825	2023-08-10	2019-02-17	4.8	5.31	—	4.8	0.006	1.07	1.0	0.05	11.37	0.01	2.197	12.11	0.58	10.8	88.9	0.3	-4.03	0.79	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108924	14244	12	0	8	0	0	logfile
✘	6JGZ	9824	2023-08-10	2019-02-16	4.6	4.96	—	4.6	0.007	1.13	0.0	0.06	11.54	0.01	2.171	11.98	0.73	11.3	88.3	0.4	-4.06	0.78	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109824	14368	12	0	4	0	0	logfile
✘	6JEo	9807	2023-08-23	2019-02-06	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94576	8774	88	0	504	0	0	logfile
✔	6JD1	9801	2023-08-12	2019-01-30	3.38	4.55	—	3.9	0.013	1.00	0.0	0.05	14.90	0.00	2.005	6.39	0.00	7.3	92.7	0.0	-4.95	0.85	0.70	1.18	4.0	0.005	0.66	0.0	0.04	15.75	0.00	1.770	17.72	0.50	8.6	91.4	0.0	-2.50	1.31	0.88	0.85	1.75	63427	3953	36	0	60	192	31469	logfile
✔	6JCZ	9800	2023-08-12	2019-01-30	3.35	4.22	—	3.7	0.006	0.81	0.0	0.04	15.49	0.00	1.670	3.80	0.00	6.8	93.2	0.0	-5.41	0.85	0.74	2.43	3.8	0.005	0.68	0.0	0.04	16.54	0.00	1.764	10.95	0.06	6.9	93.1	0.0	-2.78	2.63	0.87	0.85	2.58	63476	3959	36	0	48	99	31525	logfile
✔	6JCW	9799	2023-08-21	2019-01-30	3.04	3.78	—	3.4	0.007	0.88	0.0	0.05	15.38	0.01	2.168	1.88	0.35	6.1	93.9	0.0	-6.55	0.88	0.88	4.46	3.5	0.004	0.68	0.0	0.04	16.33	0.00	2.162	4.95	0.03	3.5	96.5	0.0	-0.07	1.31	0.86	0.89	3.75	30888	3912	36	0	24	100	0	logfile

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