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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6iY3 | 9749 | 2024-03-17 | 2018-12-12 | 3.67 | 3.77 | — | 3.7 | 0.009 | 1.08 | 0.0 | 0.06 | 26.12 | 0.01 | 2.260 | 5.55 | 0.42 | 8.2 | 91.5 | 0.2 | -3.98 | 0.77 | 0.80 | 2.08 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 25.83 | 0.00 | 2.195 | 12.33 | 1.87 | 4.9 | 95.1 | 0.0 | 0.32 | 0.78 | 0.78 | 0.80 | 0.84 | 17073 | 1365 | 11 | 294 | 1 | 0 | 0 | logfile |
✔ | 6iY2 | 9748 | 2024-03-17 | 2018-12-12 | 3.47 | 3.59 | — | 3.5 | 0.010 | 1.09 | 0.0 | 0.06 | 25.75 | 0.01 | 2.248 | 5.61 | 0.59 | 7.6 | 92.2 | 0.2 | -4.13 | 0.79 | 0.81 | 2.26 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 25.91 | 0.00 | 2.105 | 12.03 | 2.63 | 6.2 | 93.7 | 0.1 | 0.31 | 1.48 | 0.80 | 0.84 | 1.29 | 17088 | 1367 | 11 | 294 | 1 | 0 | 0 | logfile |
✔ | 6iXH | 9747 | 2024-03-26 | 2018-12-10 | 4.0 | 4.11 | — | 4.0 | 0.010 | 1.11 | 0.0 | 0.06 | 15.28 | 0.01 | 2.228 | 6.64 | 0.60 | 7.6 | 92.0 | 0.4 | -4.89 | 0.84 | 0.87 | — | 4.0 | 0.008 | 0.88 | 0.0 | 0.05 | 16.91 | 0.00 | 2.098 | 16.23 | 4.46 | 7.5 | 92.4 | 0.1 | -2.22 | 0.60 | 0.85 | 0.87 | — | 52280 | 6785 | 25 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iWW | 9743 | 2024-03-15 | 2018-12-08 | 3.9 | 3.82 | — | 3.8 | 0.008 | 1.09 | 0.0 | 0.06 | 13.48 | 0.01 | 2.301 | 5.79 | 0.00 | 4.2 | 95.8 | 0.0 | -4.19 | 0.63 | 0.81 | 2.15 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 15.35 | 0.01 | 2.067 | 12.89 | 2.78 | 3.6 | 96.4 | 0.0 | 0.30 | 1.52 | 0.64 | 0.81 | 1.31 | 10227 | 1386 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 6iV6 | 9742 | 2024-03-14 | 2018-12-02 | 3.6 | 3.59 | — | 3.6 | 0.005 | 1.04 | 0.0 | 0.05 | 17.65 | 0.01 | 2.261 | 4.91 | 0.61 | 6.7 | 93.3 | 0.1 | -5.17 | 0.64 | 0.75 | 2.10 | 3.6 | 0.003 | 0.70 | 0.0 | 0.04 | 18.96 | 0.00 | 2.162 | 9.17 | 4.34 | 8.3 | 91.7 | 0.0 | -2.56 | 0.89 | 0.69 | 0.78 | 2.14 | 10158 | 1209 | 2 | 26 | 0 | 0 | 0 | logfile |
✔ | 6iUG | 9734 | 2024-03-16 | 2018-11-28 | 3.9 | 3.96 | — | 3.8 | 0.005 | 0.90 | 0.0 | 0.05 | 10.73 | 0.01 | 2.105 | 7.72 | 0.96 | 8.4 | 91.6 | 0.0 | -3.83 | 0.72 | 0.83 | 1.84 | 3.8 | 0.003 | 0.74 | 0.0 | 0.05 | 14.37 | 0.00 | 1.920 | 16.07 | 1.73 | 8.0 | 92.0 | 0.0 | -0.97 | 1.32 | 0.73 | 0.84 | 1.58 | 14585 | 1855 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6iTC | 9731 | 2024-03-16 | 2018-11-21 | 3.45 | 3.58 | — | 3.5 | 0.016 | 1.48 | 5.0 | 0.08 | 13.87 | 0.01 | 1.574 | 8.12 | 1.02 | 9.0 | 90.9 | 0.1 | -4.35 | 0.69 | 0.77 | 1.77 | 3.5 | 0.003 | 0.73 | 0.0 | 0.04 | 16.24 | 0.00 | 2.013 | 12.22 | 4.00 | 6.4 | 93.6 | 0.0 | -0.91 | 0.78 | 0.72 | 0.83 | 1.69 | 13844 | 1738 | 9 | 0 | 6 | 0 | 0 | logfile |
✔ | 6iRT | 9722 | 2024-03-11 | 2018-11-14 | 3.5 | 3.76 | — | 3.7 | 0.012 | 1.23 | 0.0 | 0.09 | 14.32 | 0.01 | 2.241 | 10.46 | 3.01 | 9.2 | 90.0 | 0.8 | -5.53 | 0.63 | 0.80 | 3.32 | 3.7 | 0.004 | 0.80 | 0.0 | 0.05 | 14.44 | 0.00 | 2.174 | 11.00 | 3.93 | 8.1 | 91.4 | 0.4 | -0.99 | 0.87 | 0.65 | 0.81 | 2.59 | 7348 | 926 | 7 | 0 | 11 | 0 | 0 | logfile |
✔ | 6iRS | 9721 | 2024-03-11 | 2018-11-14 | 3.3 | 3.44 | — | 3.4 | 0.011 | 1.36 | 0.0 | 0.07 | 14.19 | 0.01 | 2.150 | 13.11 | 3.66 | 8.8 | 90.3 | 0.9 | -5.69 | 0.62 | 0.77 | 2.28 | 3.4 | 0.003 | 0.80 | 0.0 | 0.04 | 15.70 | 0.00 | 2.128 | 9.39 | 2.49 | 6.7 | 93.2 | 0.1 | -0.63 | 1.43 | 0.64 | 0.79 | 1.60 | 7337 | 926 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 6iRo | 9720 | 2024-03-16 | 2018-11-13 | 3.4 | 3.71 | — | 3.4 | 0.010 | 1.08 | 0.0 | 0.06 | 26.54 | 0.01 | 2.262 | 4.09 | 0.74 | 5.9 | 94.1 | 0.0 | -4.09 | 0.87 | 0.85 | 2.33 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 26.08 | 0.00 | 2.200 | 9.69 | 1.95 | 4.2 | 95.8 | 0.0 | 0.22 | 1.96 | 0.87 | 0.86 | 1.40 | 16108 | 1262 | 12 | 292 | 1 | 0 | 0 | logfile |
✔ | 6K1P | 9719 | 2024-03-16 | 2019-05-10 | 3.87 | 4.09 | — | 4.0 | 0.010 | 1.03 | 0.0 | 0.06 | 24.90 | 0.01 | 1.838 | 5.33 | 0.10 | 8.5 | 90.9 | 0.6 | -4.45 | 0.75 | 0.82 | 2.45 | 4.0 | 0.003 | 0.62 | 0.0 | 0.04 | 25.36 | 0.00 | 1.923 | 8.82 | 2.78 | 6.0 | 94.0 | 0.0 | -0.03 | 2.46 | 0.75 | 0.82 | 0.93 | 15841 | 1230 | 11 | 292 | 3 | 0 | 0 | logfile |
✔ | 6JYL | 9718 | 2024-03-17 | 2019-04-26 | 3.37 | 4.00 | — | 3.4 | 0.008 | 0.85 | 0.0 | 0.05 | 24.56 | 0.01 | 2.086 | 2.75 | 0.28 | 4.8 | 95.0 | 0.2 | -3.67 | 0.90 | 0.87 | 2.92 | 3.4 | 0.003 | 0.57 | 0.0 | 0.03 | 24.29 | 0.00 | 1.441 | 7.47 | 0.65 | 4.1 | 95.9 | 0.0 | 0.87 | 0.54 | 0.90 | 0.88 | 1.81 | 16136 | 1265 | 11 | 292 | 3 | 0 | 0 | logfile |
✔ | 6iRA | 9714 | 2024-03-19 | 2018-11-12 | 4.5 | 5.18 | — | 5.1 | 0.009 | 1.42 | 13.0 | 0.07 | 8.45 | 0.01 | 1.413 | 20.24 | 0.12 | 10.0 | 89.1 | 0.9 | -3.53 | 0.60 | 0.69 | — | 5.1 | 0.003 | 0.80 | 0.0 | 0.05 | 12.20 | 0.00 | 2.066 | 19.67 | 0.00 | 8.5 | 91.2 | 0.3 | -1.49 | 2.16 | 0.62 | 0.74 | — | 23932 | 3080 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iR9 | 9713 | 2024-03-25 | 2018-11-12 | 3.8 | 4.23 | — | 3.5 | 0.009 | 1.22 | 3.0 | 0.07 | 17.99 | 0.01 | 2.071 | 7.47 | 0.74 | 4.3 | 95.0 | 0.7 | -1.69 | 0.76 | 0.65 | 0.96 | 3.5 | 0.006 | 0.75 | 0.0 | 0.04 | 19.17 | 0.00 | 1.969 | 14.60 | 1.50 | 4.6 | 95.3 | 0.1 | 0.62 | 0.96 | 0.83 | 0.80 | 1.39 | 46231 | 5123 | 34 | 267 | 11 | 0 | 0 | logfile |
✔ | 6iQW | 9708 | 2024-03-17 | 2018-11-09 | 3.35 | 3.98 | — | 3.9 | 0.007 | 1.05 | 1.0 | 0.06 | 16.46 | 0.01 | 1.757 | 8.27 | 0.35 | 13.5 | 86.1 | 0.4 | -4.93 | 0.60 | 0.74 | 1.41 | 3.9 | 0.004 | 0.78 | 0.0 | 0.05 | 18.06 | 0.01 | 2.124 | 17.10 | 3.68 | 10.9 | 89.0 | 0.1 | -2.24 | 3.22 | 0.60 | 0.75 | 0.93 | 16935 | 2073 | 8 | 24 | 1 | 0 | 0 | logfile |
✔ | 6iP2 | 9698 | 2024-03-19 | 2018-11-01 | 3.7 | 3.82 | — | 3.8 | 0.008 | 1.38 | 0.0 | 0.06 | 12.87 | 0.01 | 2.237 | 6.67 | 0.26 | 12.2 | 87.7 | 0.1 | -5.47 | 0.70 | 0.77 | 1.63 | 3.8 | 0.003 | 0.77 | 0.0 | 0.05 | 16.77 | 0.00 | 2.073 | 15.31 | 2.93 | 10.4 | 89.6 | 0.1 | -1.86 | 0.94 | 0.71 | 0.78 | 1.02 | 24660 | 3120 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 6iP1 | 9697 | 2024-03-15 | 2018-11-01 | 3.9 | 4.05 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.05 | 11.71 | 0.00 | 1.321 | 7.91 | 0.34 | 7.5 | 92.5 | 0.0 | -5.85 | 0.59 | 0.72 | 1.01 | 4.0 | 0.005 | 1.26 | 2.0 | 0.04 | 18.59 | 0.01 | 1.977 | 21.93 | 4.49 | 8.1 | 91.8 | 0.1 | -0.73 | 1.22 | 0.61 | 0.75 | 0.08 | 11245 | 1420 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ioL | 9696 | 2024-03-25 | 2018-10-30 | 3.76 | 3.62 | 3.77 | 3.8 | 0.005 | 0.97 | 0.0 | 0.06 | 10.77 | 0.01 | 2.201 | 5.12 | 0.33 | 5.6 | 94.4 | 0.0 | -4.06 | 0.63 | 0.80 | 2.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49077 | 6450 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ioK | 9695 | 2024-03-25 | 2018-10-30 | 3.64 | 3.38 | 3.69 | 3.6 | 0.007 | 1.04 | 0.0 | 0.06 | 11.57 | 0.01 | 1.322 | 5.10 | 0.35 | 4.6 | 95.4 | 0.0 | -3.61 | 0.59 | 0.80 | 2.32 | 3.6 | 0.003 | 0.68 | 1.0 | 0.04 | 15.01 | 0.00 | 2.079 | 9.65 | 3.04 | 2.8 | 97.2 | 0.0 | 0.54 | 1.00 | 0.60 | 0.80 | 1.42 | 49014 | 6441 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6iJZ | 9682 | 2024-03-15 | 2018-10-12 | 3.68 | 3.76 | — | 3.7 | 0.008 | 1.11 | 0.0 | 0.06 | 10.64 | 0.01 | 2.000 | 4.54 | 0.69 | 10.9 | 88.8 | 0.3 | -5.03 | 0.57 | 0.80 | 2.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10964 | 1366 | 2 | 0 | 0 | 0 | 0 | logfile |