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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7SSL | 25409 | 2022-07-11 | 2021-11-11 | 3.8 | 3.94 | 4.31 | 3.8 | 0.009 | 1.02 | 0.0 | 0.08 | 15.30 | 0.01 | 0.524 | 13.16 | 1.11 | 12.6 | 87.2 | 0.2 | -5.13 | 0.76 | 0.73 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 153348 | 6626 | 59 | 4736 | 1 | 0 | 0 | logfile |
✔ | 6M62 | 30108 | 2022-07-11 | 2020-03-12 | 3.2 | 3.35 | — | 3.3 | 0.012 | 1.03 | 0.0 | 0.06 | 18.95 | 0.01 | 1.750 | 17.63 | 8.91 | 14.8 | 84.9 | 0.2 | -4.39 | 0.73 | 0.81 | 2.04 | 3.3 | 0.005 | 0.70 | 1.0 | 0.04 | 18.33 | 0.01 | 1.838 | 12.68 | 0.63 | 9.4 | 90.5 | 0.1 | -1.57 | 1.11 | 0.73 | 0.81 | 1.79 | 153289 | 10320 | 64 | 3316 | 8 | 0 | 0 | logfile |
✔ | 6WD2 | 21621 | 2022-07-11 | 2020-03-31 | 3.6 | 3.97 | 4.00 | 3.8 | 0.006 | 0.94 | 0.0 | 0.08 | 13.45 | 0.01 | 1.315 | 11.17 | 0.44 | 10.6 | 87.8 | 1.6 | -4.77 | 0.83 | 0.83 | 0.92 | 3.8 | 0.006 | 0.78 | 1.0 | 0.04 | 15.99 | 0.01 | 1.963 | 24.76 | 1.17 | 10.7 | 89.2 | 0.1 | -2.51 | 1.49 | 0.84 | 0.84 | 0.76 | 153282 | 6417 | 62 | 4810 | 1 | 0 | 0 | logfile |
✘ | 5WE6 | 8815 | 2022-07-11 | 2017-07-07 | 3.4 | 3.36 | 3.38 | 3.3 | 0.007 | 1.09 | 2.0 | 0.10 | 16.96 | 0.01 | 1.180 | 1.98 | 2.48 | 10.3 | 87.3 | 2.4 | -4.31 | 0.77 | 0.80 | 2.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 153233 | 6322 | 97 | 4801 | 671 | 153 | 0 | logfile |
✔ | 6WD8 | 21627 | 2022-07-11 | 2020-03-31 | 3.7 | 4.07 | 4.18 | 3.9 | 0.006 | 0.96 | 0.0 | 0.08 | 13.51 | 0.01 | 1.315 | 12.67 | 0.80 | 11.4 | 86.9 | 1.7 | -4.88 | 0.83 | 0.81 | 1.18 | 3.9 | 0.005 | 0.77 | 0.0 | 0.04 | 16.54 | 0.01 | 2.011 | 26.97 | 1.09 | 11.1 | 88.8 | 0.1 | -2.64 | 1.52 | 0.85 | 0.82 | 0.90 | 153212 | 6409 | 62 | 4810 | 1 | 0 | 0 | logfile |
✔ | 6WD3 | 21622 | 2022-07-11 | 2020-03-31 | 3.6 | 3.96 | 3.97 | 3.8 | 0.006 | 0.95 | 0.0 | 0.08 | 13.44 | 0.01 | 1.315 | 11.61 | 0.96 | 12.0 | 86.3 | 1.8 | -4.89 | 0.83 | 0.83 | 1.34 | 3.8 | 0.007 | 0.82 | 2.0 | 0.04 | 16.06 | 0.01 | 1.671 | 29.20 | 0.57 | 11.4 | 88.4 | 0.2 | -2.74 | 1.48 | 0.84 | 0.84 | 0.97 | 153211 | 6408 | 62 | 4811 | 0 | 0 | 0 | logfile |
✘ | 5LZD | 4124 | 2022-07-11 | 2016-09-29 | 3.4 | 3.48 | 3.51 | 3.4 | 0.008 | 1.22 | 9.0 | 0.06 | 13.59 | 0.01 | 1.168 | 6.19 | 0.71 | 7.6 | 91.0 | 1.4 | -3.90 | 0.75 | 0.86 | 2.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 153177 | 6439 | 68 | 4785 | 152 | 2 | 0 | logfile |
✔ | 6WD5 | 21624 | 2022-07-11 | 2020-03-31 | 3.6 | 3.95 | 3.98 | 3.8 | 0.006 | 0.94 | 0.0 | 0.08 | 13.45 | 0.01 | 1.312 | 11.66 | 0.77 | 11.6 | 86.5 | 2.0 | -4.87 | 0.83 | 0.83 | 1.21 | 3.8 | 0.007 | 0.80 | 2.0 | 0.04 | 15.97 | 0.01 | 2.029 | 23.71 | 0.86 | 11.4 | 88.5 | 0.2 | -2.66 | 0.66 | 0.84 | 0.84 | 0.87 | 153135 | 6400 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6WD6 | 21625 | 2022-07-10 | 2020-03-31 | 3.7 | 4.07 | 4.15 | 3.9 | 0.006 | 0.94 | 0.0 | 0.08 | 13.34 | 0.01 | 1.316 | 11.55 | 0.71 | 11.1 | 87.3 | 1.6 | -4.98 | 0.83 | 0.82 | 0.92 | 3.9 | 0.008 | 0.86 | 4.0 | 0.04 | 15.83 | 0.01 | 1.765 | 27.36 | 0.61 | 9.7 | 90.1 | 0.2 | -2.83 | 0.62 | 0.84 | 0.83 | 0.90 | 153103 | 6396 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6WD4 | 21623 | 2022-07-10 | 2020-03-31 | 3.7 | 4.02 | 4.02 | 3.9 | 0.006 | 0.94 | 0.0 | 0.08 | 13.36 | 0.01 | 1.313 | 10.92 | 0.48 | 11.3 | 87.0 | 1.7 | -4.79 | 0.83 | 0.83 | 0.81 | 3.8 | 0.007 | 0.83 | 1.0 | 0.04 | 15.80 | 0.01 | 1.998 | 26.18 | 1.78 | 11.3 | 88.5 | 0.2 | -2.68 | 0.64 | 0.84 | 0.84 | 0.73 | 153083 | 6391 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 7SSD | 25407 | 2022-07-10 | 2021-11-10 | 3.3 | 3.46 | 3.72 | 3.4 | 0.007 | 0.90 | 0.0 | 0.07 | 14.76 | 0.01 | 1.912 | 9.69 | 1.08 | 11.6 | 87.7 | 0.7 | -5.26 | 0.75 | 0.75 | 1.20 | 3.4 | 0.007 | 0.92 | 1.0 | 0.04 | 17.02 | 0.01 | 1.647 | 23.43 | 0.32 | 14.3 | 85.5 | 0.2 | -3.67 | 0.98 | 0.76 | 0.78 | 0.89 | 153049 | 6597 | 59 | 4733 | 0 | 0 | 0 | logfile |
✔ | 5iMQ | 6584 | 2022-07-11 | 2016-03-06 | 3.8 | 3.95 | — | 3.9 | 0.012 | 1.41 | 0.0 | 0.07 | 20.60 | 0.01 | 1.006 | 63.10 | 4.55 | 16.6 | 72.8 | 10.6 | -4.61 | 0.71 | 0.65 | 0.92 | 3.9 | 0.006 | 0.96 | 2.0 | 0.04 | 19.19 | 0.01 | 1.732 | 25.86 | 1.21 | 17.1 | 80.6 | 2.4 | -3.87 | 0.80 | 0.82 | 0.79 | 0.34 | 153046 | 6640 | 56 | 4680 | 1 | 0 | 0 | logfile |
✘ | 5LZC | 4123 | 2022-07-10 | 2016-09-29 | 4.8 | 5.11 | 5.27 | 4.8 | 0.007 | 1.20 | 10.0 | 0.06 | 12.54 | 0.01 | 1.153 | 5.33 | 0.11 | 5.7 | 92.4 | 1.8 | -1.87 | 0.82 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 152981 | 6432 | 64 | 4785 | 5 | 2 | 0 | logfile |
✔ | 6WDA | 21629 | 2022-07-10 | 2020-03-31 | 3.8 | 4.14 | 4.11 | 3.9 | 0.006 | 0.93 | 0.0 | 0.08 | 13.30 | 0.01 | 1.314 | 10.82 | 0.69 | 10.6 | 87.8 | 1.6 | -4.79 | 0.84 | 0.82 | 0.86 | 3.9 | 0.008 | 0.88 | 2.0 | 0.04 | 16.24 | 0.01 | 1.801 | 32.76 | 1.62 | 11.9 | 88.0 | 0.1 | -2.65 | 1.51 | 0.86 | 0.83 | 0.57 | 152933 | 6373 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6WD9 | 21628 | 2022-07-10 | 2020-03-31 | 3.7 | 4.05 | 4.07 | 3.9 | 0.006 | 0.94 | 0.0 | 0.08 | 13.39 | 0.01 | 1.313 | 11.30 | 0.54 | 10.7 | 87.6 | 1.7 | -4.88 | 0.83 | 0.82 | 1.03 | 3.9 | 0.006 | 0.78 | 2.0 | 0.04 | 15.95 | 0.01 | 1.991 | 23.92 | 1.17 | 10.8 | 89.1 | 0.2 | -2.41 | 0.67 | 0.84 | 0.83 | 0.69 | 152927 | 6371 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 5U9F | 8521 | 2022-07-10 | 2016-12-16 | 3.2 | 4.48 | — | 3.3 | 0.006 | 0.95 | 0.0 | 0.08 | 13.57 | 0.01 | 2.301 | 12.66 | 1.02 | 10.8 | 88.2 | 1.0 | -5.04 | 0.87 | 0.78 | 1.55 | 3.4 | 0.006 | 0.74 | 1.0 | 0.04 | 15.79 | 0.01 | 1.801 | 26.21 | 0.96 | 10.9 | 89.0 | 0.1 | -2.26 | 1.46 | 0.94 | 0.90 | 1.08 | 152819 | 6576 | 72 | 4729 | 361 | 0 | 0 | logfile |
✘ | 7PJW | 13462 | 2022-07-10 | 2021-08-24 | 4.0 | 4.18 | 3.62 | 4.0 | 0.007 | 0.90 | 3.0 | 0.05 | 16.82 | 0.01 | 1.175 | 23.13 | 0.46 | 13.5 | 86.3 | 0.2 | -4.51 | 0.71 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 152719 | 6657 | 61 | 4728 | 2 | 0 | 0 | logfile |
✔ | 5U9G | 8522 | 2022-07-10 | 2016-12-16 | 3.2 | 4.54 | — | 3.3 | 0.006 | 0.92 | 0.0 | 0.08 | 13.52 | 0.01 | 2.111 | 12.41 | 0.93 | 10.6 | 88.5 | 1.0 | -5.08 | 0.89 | 0.79 | 1.20 | 3.4 | 0.006 | 0.73 | 0.0 | 0.04 | 15.50 | 0.01 | 1.805 | 24.37 | 0.78 | 9.9 | 89.9 | 0.2 | -1.89 | 1.89 | 0.95 | 0.91 | 1.08 | 152649 | 6561 | 70 | 4729 | 349 | 0 | 0 | logfile |
✔ | 5MMM | 3533 | 2022-07-10 | 2016-12-11 | 3.4 | 3.54 | — | 3.4 | 0.008 | 1.13 | 0.0 | 0.05 | 16.64 | 0.01 | 1.757 | 9.06 | 9.93 | 4.9 | 94.8 | 0.3 | -3.33 | 0.90 | 0.86 | 1.38 | 3.4 | 0.006 | 0.69 | 2.0 | 0.04 | 16.29 | 0.01 | 1.109 | 15.15 | 0.32 | 4.6 | 95.3 | 0.1 | -0.58 | 0.73 | 0.89 | 0.84 | 1.25 | 152465 | 6586 | 86 | 4585 | 955 | 0 | 0 | logfile |
✘ | 5ZEP | 6921 | 2022-07-10 | 2018-02-27 | 3.4 | 5.11 | — | 4.5 | 0.010 | 1.18 | 5.0 | 0.06 | 16.72 | 0.01 | 1.089 | 21.21 | 3.06 | 8.5 | 90.3 | 1.3 | -3.96 | 0.70 | 0.53 | 0.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 152451 | 6193 | 58 | 4802 | 262 | 0 | 0 | logfile |