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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7AC7 | 11713 | 2024-03-02 | 2020-09-10 | 3.08 | 3.25 | 3.06 | 3.1 | 0.003 | 0.56 | 5.0 | 0.03 | 23.02 | 0.02 | 1.183 | 10.07 | 0.66 | 3.1 | 96.7 | 0.2 | -0.42 | 0.80 | 0.83 | 2.85 | 3.1 | 0.006 | 0.67 | 0.0 | 0.04 | 23.10 | 0.01 | 0.998 | 8.72 | 3.99 | 4.0 | 95.9 | 0.1 | -0.18 | 0.58 | 0.84 | 0.90 | 2.70 | 154883 | 5975 | 71 | 5017 | 443 | 0 | 0 | logfile |
✔ | 6Z5L | 11079 | 2024-03-03 | 2020-05-26 | 3.8 | 4.08 | — | 3.9 | 0.004 | 0.63 | 0.0 | 0.03 | 15.41 | 0.00 | 1.986 | 3.72 | 0.00 | 5.2 | 94.8 | 0.0 | 1.60 | 0.53 | 0.68 | 0.31 | 3.9 | 0.003 | 0.68 | 0.0 | 0.04 | 17.50 | 0.00 | 2.118 | 14.24 | 1.95 | 4.3 | 95.7 | 0.0 | 2.37 | 1.28 | 0.58 | 0.86 | 0.94 | 154880 | 20080 | 80 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Q95 | 4475 | 2024-03-02 | 2018-12-17 | 3.7 | 3.72 | — | 3.7 | 0.012 | 1.38 | 0.0 | 0.06 | 25.82 | 0.01 | 1.247 | 8.93 | 1.13 | 16.6 | 82.6 | 0.8 | -5.45 | 0.81 | 0.82 | 1.61 | 3.7 | 0.004 | 0.85 | 0.0 | 0.04 | 25.48 | 0.01 | 1.076 | 18.76 | 4.93 | 13.9 | 85.6 | 0.4 | -3.23 | 1.95 | 0.79 | 0.80 | 1.17 | 154751 | 5924 | 84 | 4932 | 910 | 0 | 0 | logfile |
✔ | 5oT7 | 3852 | 2024-03-02 | 2017-08-21 | 3.8 | 3.85 | 3.80 | 3.8 | 0.003 | 0.84 | 0.0 | 0.04 | 23.30 | 0.01 | 1.298 | 6.70 | 0.49 | 12.5 | 87.2 | 0.3 | -5.45 | 0.77 | 0.70 | 1.03 | 3.8 | 0.007 | 0.83 | 0.0 | 0.04 | 23.82 | 0.01 | 1.069 | 21.99 | 5.35 | 14.9 | 84.9 | 0.3 | -3.61 | 1.32 | 0.84 | 0.81 | 0.87 | 154665 | 6718 | 75 | 4614 | 805 | 0 | 0 | logfile |
✔ | 5KPX | 8282 | 2024-03-02 | 2016-07-05 | 3.9 | 5.30 | 4.08 | 3.8 | 0.008 | 1.18 | 6.0 | 0.09 | 22.84 | 0.01 | 2.087 | 29.88 | 0.58 | 13.2 | 80.2 | 6.6 | -4.56 | 0.90 | 0.77 | 0.50 | 4.0 | 0.006 | 0.80 | 1.0 | 0.04 | 23.90 | 0.01 | 1.550 | 36.46 | 4.53 | 11.5 | 87.5 | 1.0 | -2.35 | 1.08 | 0.94 | 0.90 | 0.13 | 154603 | 6623 | 59 | 4812 | 0 | 0 | 0 | logfile |
✘ | 5KPW | 8281 | 2024-03-28 | 2016-07-05 | 3.9 | 5.27 | 4.08 | 3.8 | 0.007 | 1.11 | 5.0 | 0.09 | 22.51 | 0.01 | 2.191 | 24.08 | 0.79 | 12.9 | 81.4 | 5.7 | -4.53 | 0.90 | 0.77 | 0.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 154603 | 6623 | 59 | 4812 | 0 | 0 | 0 | logfile |
✔ | 5KPV | 8280 | 2024-03-02 | 2016-07-05 | 4.1 | 5.32 | 4.22 | 4.1 | 0.008 | 1.18 | 5.0 | 0.09 | 22.93 | 0.01 | 2.074 | 34.60 | 0.66 | 13.5 | 80.3 | 6.2 | -4.67 | 0.90 | 0.78 | — | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 23.46 | 0.01 | 2.026 | 29.54 | 0.00 | 10.9 | 88.2 | 0.9 | -1.99 | 1.78 | 0.94 | 0.90 | — | 154603 | 6623 | 59 | 4812 | 0 | 0 | 0 | logfile |
✔ | 5WF0 | 8826 | 2024-03-02 | 2017-07-11 | 3.6 | 3.35 | 3.39 | 3.3 | 0.008 | 1.12 | 3.0 | 0.10 | 24.25 | 0.02 | 0.789 | 3.28 | 4.47 | 9.7 | 87.8 | 2.4 | -4.19 | 0.75 | 0.77 | 2.17 | 3.3 | 0.007 | 0.84 | 0.0 | 0.04 | 23.77 | 0.01 | 1.731 | 13.45 | 4.86 | 9.3 | 90.1 | 0.6 | -1.95 | 3.01 | 0.80 | 0.79 | 2.05 | 154600 | 6324 | 110 | 4802 | 1486 | 676 | 0 | logfile |
✔ | 6PJ6 | 20353 | 2024-03-02 | 2019-06-27 | 2.2 | 2.48 | — | 2.5 | 0.011 | 1.07 | 14.0 | 0.06 | 23.52 | 0.02 | 1.227 | 5.24 | 2.25 | 5.6 | 94.4 | 0.1 | -2.65 | 0.62 | 0.85 | 4.58 | 2.5 | 0.005 | 0.70 | 1.0 | 0.04 | 23.53 | 0.01 | 0.951 | 7.52 | 3.47 | 5.6 | 94.4 | 0.0 | -0.87 | 1.29 | 0.63 | 0.86 | 4.40 | 154542 | 3356 | 67 | 3016 | 187 | 3897 | 59624 | logfile |
✔ | 5iQR | 8107 | 2024-03-02 | 2016-03-11 | 3.0 | 3.10 | 3.03 | 3.1 | 0.008 | 1.25 | 41.0 | 0.10 | 24.24 | 0.02 | 0.899 | 7.48 | 6.07 | 7.5 | 91.0 | 1.5 | -2.52 | 0.76 | 0.81 | 1.93 | 3.0 | 0.003 | 0.68 | 0.0 | 0.03 | 23.77 | 0.01 | 1.070 | 14.69 | 4.52 | 5.3 | 94.4 | 0.2 | -0.61 | 2.06 | 0.81 | 0.86 | 1.86 | 154519 | 6570 | 74 | 4794 | 303 | 2 | 0 | logfile |
✔ | 5UYK | 8615 | 2024-03-02 | 2017-02-24 | 3.9 | 4.36 | 4.13 | 3.8 | 0.008 | 1.03 | 0.0 | 0.09 | 22.22 | 0.01 | 2.162 | 11.52 | 0.88 | 11.8 | 86.4 | 1.7 | -4.85 | 0.89 | 0.83 | 1.06 | 3.6 | 0.006 | 0.74 | 1.0 | 0.04 | 23.58 | 0.01 | 1.881 | 25.39 | 5.74 | 11.3 | 88.6 | 0.1 | -2.61 | 3.67 | 0.89 | 0.85 | 0.75 | 154412 | 6563 | 60 | 4812 | 1 | 0 | 0 | logfile |
✔ | 7Z4F | 14495 | 2024-03-02 | 2022-03-03 | 4.2 | 4.06 | 5.31 | 3.9 | 0.006 | 0.83 | 24.0 | 0.05 | 14.46 | 0.01 | 0.140 | 45.30 | 0.97 | 8.4 | 90.6 | 0.9 | -2.35 | 0.75 | 0.63 | — | 3.9 | 0.014 | 0.90 | 2.0 | 0.05 | 14.35 | 0.01 | 2.023 | 30.18 | 0.00 | 13.1 | 86.3 | 0.6 | -2.61 | 1.00 | 0.77 | 0.72 | — | 154392 | 21600 | 66 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UG7 | 26486 | 2024-03-02 | 2022-03-24 | 2.58 | 3.04 | 2.86 | 2.8 | 0.009 | 1.11 | 8.0 | 0.09 | 23.18 | 0.02 | 1.456 | 3.67 | 2.15 | 3.2 | 96.7 | 0.1 | 0.05 | 0.84 | 0.88 | 2.79 | 2.9 | 0.006 | 0.72 | 3.0 | 0.04 | 22.60 | 0.01 | 1.821 | 10.70 | 4.16 | 3.3 | 96.7 | 0.0 | 0.06 | 0.53 | 0.84 | 0.90 | 2.93 | 154353 | 6785 | 70 | 4701 | 420 | 0 | 0 | logfile |
✔ | 5WFK | 8828 | 2024-03-02 | 2017-07-12 | 3.4 | 3.64 | 3.59 | 3.6 | 0.008 | 1.11 | 3.0 | 0.10 | 24.20 | 0.02 | 1.013 | 3.73 | 3.19 | 9.7 | 88.0 | 2.3 | -4.14 | 0.77 | 0.78 | 1.88 | 3.6 | 0.008 | 0.91 | 0.0 | 0.04 | 23.93 | 0.01 | 1.583 | 16.50 | 7.30 | 11.3 | 88.1 | 0.6 | -2.31 | 1.66 | 0.82 | 0.83 | 1.72 | 154325 | 6324 | 113 | 4802 | 1415 | 419 | 0 | logfile |
✔ | 5UYM | 8617 | 2024-03-02 | 2017-02-24 | 3.2 | 4.16 | 3.27 | 3.2 | 0.007 | 1.00 | 0.0 | 0.08 | 22.19 | 0.01 | 1.331 | 12.54 | 1.17 | 11.5 | 86.5 | 2.0 | -5.21 | 0.91 | 0.82 | 2.50 | 3.2 | 0.005 | 0.68 | 0.0 | 0.04 | 22.98 | 0.00 | 1.782 | 18.57 | 5.35 | 10.1 | 89.7 | 0.2 | -1.76 | 1.78 | 0.95 | 0.91 | 1.83 | 154139 | 6476 | 72 | 4810 | 386 | 0 | 0 | logfile |
✔ | 3JCE | 6550 | 2024-03-02 | 2015-12-01 | 3.2 | 4.36 | — | 14.0 | 0.008 | 0.88 | 0.0 | 0.04 | 22.68 | 0.00 | 1.106 | 32.64 | 0.47 | 10.4 | 84.8 | 4.8 | -2.93 | 0.33 | 0.04 | 0.16 | 3.1 | 0.006 | 1.17 | 5.0 | 0.05 | 25.14 | 0.01 | 1.590 | 49.53 | 2.65 | 13.3 | 85.5 | 1.2 | -3.72 | 1.89 | 0.70 | 0.41 | 0.15 | 154017 | 6546 | 59 | 4798 | 2 | 0 | 0 | logfile |
✔ | 6Q98 | 4477 | 2024-03-02 | 2018-12-17 | 4.3 | 4.44 | — | 4.4 | 0.008 | 1.20 | 0.0 | 0.15 | 25.15 | 0.02 | 1.954 | 10.00 | 0.48 | 12.0 | 87.9 | 0.0 | -4.86 | 0.83 | 0.80 | — | 4.4 | 0.005 | 0.78 | 0.0 | 0.04 | 24.25 | 0.01 | 1.270 | 23.40 | 0.04 | 12.3 | 87.7 | 0.0 | -2.91 | 1.26 | 0.82 | 0.80 | — | 153878 | 6132 | 71 | 4920 | 431 | 2 | 0 | logfile |
✔ | 6FTi | 4316 | 2024-03-02 | 2018-02-22 | 4.2 | 4.31 | — | 4.2 | 0.011 | 1.38 | 18.0 | 0.10 | 25.55 | 0.01 | 0.284 | 12.03 | 11.77 | 9.7 | 87.9 | 2.4 | -4.07 | 0.61 | 0.61 | — | 4.2 | 0.004 | 0.78 | 0.0 | 0.04 | 24.07 | 0.01 | 1.148 | 24.17 | 0.06 | 8.2 | 91.2 | 0.5 | -1.60 | 1.00 | 0.63 | 0.66 | — | 153850 | 8349 | 76 | 4014 | 399 | 0 | 0 | logfile |
✔ | 5UYP | 8619 | 2024-03-02 | 2017-02-24 | 3.9 | 4.42 | 4.29 | 3.6 | 0.007 | 1.07 | 0.0 | 0.09 | 22.43 | 0.01 | 1.318 | 13.07 | 1.57 | 14.3 | 82.6 | 3.1 | -5.15 | 0.87 | 0.79 | 0.53 | 3.6 | 0.004 | 0.73 | 0.0 | 0.04 | 23.84 | 0.01 | 1.030 | 28.72 | 5.39 | 12.3 | 87.6 | 0.2 | -3.02 | 0.77 | 0.87 | 0.82 | 0.39 | 153780 | 6476 | 63 | 4811 | 1 | 0 | 0 | logfile |
✔ | 5UYQ | 8620 | 2024-03-02 | 2017-02-24 | 3.8 | 4.28 | 4.16 | 3.7 | 0.007 | 1.05 | 0.0 | 0.09 | 22.52 | 0.01 | 1.314 | 14.34 | 1.29 | 13.9 | 83.4 | 2.7 | -5.24 | 0.86 | 0.79 | 0.45 | 3.5 | 0.005 | 0.78 | 1.0 | 0.04 | 23.98 | 0.01 | 1.096 | 30.27 | 5.43 | 13.4 | 86.4 | 0.2 | -3.16 | 0.73 | 0.87 | 0.82 | 0.42 | 153759 | 6476 | 63 | 4810 | 2 | 0 | 0 | logfile |