Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GJC	0011	2023-04-25	2018-05-16	3.3	3.78	3.65	3.6	0.008	1.07	6.0	0.06	10.27	0.01	2.247	5.47	1.03	7.5	92.5	0.0	-4.03	0.86	0.84	2.14	3.6	0.003	0.69	0.0	0.04	13.17	0.00	2.106	10.45	0.30	6.0	94.0	0.0	-0.63	0.66	0.87	0.86	1.70	124992	16620	12	0	6	0	0	logfile
✔	3J79	2660	2023-04-25	2014-06-02	3.2	3.25	3.13	3.2	0.007	1.31	43.0	0.10	19.59	0.01	1.505	4.40	11.66	7.2	90.4	2.4	-1.45	0.53	0.71	0.94	3.2	0.003	0.64	0.0	0.04	17.82	0.01	1.892	13.81	0.62	5.4	94.1	0.5	-0.13	0.96	0.65	0.85	1.71	124514	6244	55	3460	168	0	0	logfile
✔	7U06	26255	2023-04-26	2022-02-17	4.2	3.74	—	3.7	0.005	0.86	0.0	0.05	14.08	0.01	1.997	5.33	0.01	11.1	88.8	0.1	-2.22	0.50	0.68	—	3.7	0.004	0.62	0.0	0.04	14.18	0.00	1.865	12.37	0.01	11.2	88.6	0.2	-1.99	0.53	0.52	0.70	—	124310	7391	31	0	764	0	60450	logfile
✔	7VMS	32037	2023-04-25	2021-10-09	3.8	3.43	—	3.3	0.003	0.64	0.0	0.04	13.33	0.00	2.073	13.12	0.20	6.2	93.8	0.0	-2.49	0.62	0.69	0.68	3.3	0.003	0.65	0.0	0.04	15.61	0.00	2.103	12.73	0.26	7.2	92.8	0.0	-1.01	1.47	0.62	0.70	0.74	123552	13608	12	0	3004	0	0	logfile
✔	7VMR	32036	2023-04-25	2021-10-09	3.3	2.92	—	3.1	0.003	0.66	8.0	0.04	14.56	0.00	2.099	10.88	1.87	6.4	93.6	0.0	-0.66	0.63	0.70	1.34	3.0	0.003	0.63	0.0	0.04	16.02	0.00	2.116	11.90	0.34	7.0	93.0	0.0	-0.69	0.53	0.65	0.75	1.54	123548	13608	12	0	3000	0	0	logfile
✔	8EUG	24412	2023-04-25	2022-10-18	2.8	2.82	—	2.8	0.005	0.53	0.0	0.03	15.48	0.00	2.091	7.67	0.47	3.5	96.2	0.3	-0.23	0.81	0.81	3.22	2.8	0.004	0.59	0.0	0.04	15.74	0.00	2.056	9.21	1.87	4.0	95.8	0.2	0.13	0.30	0.81	0.82	3.01	123162	7108	47	3138	1	0	0	logfile
✔	8EUi	24423	2023-04-25	2022-10-18	3.1	3.13	—	3.1	0.004	0.52	0.0	0.03	15.20	0.00	2.143	7.87	0.18	3.8	96.2	0.1	-0.02	0.82	0.81	3.11	3.1	0.004	0.56	0.0	0.04	15.41	0.00	2.061	8.79	0.30	4.0	96.0	0.0	0.31	0.28	0.82	0.82	2.66	122892	7155	47	3131	1	0	0	logfile
✔	7S21	24815	2023-04-25	2021-09-02	3.4	3.86	—	3.8	0.006	0.78	0.0	0.04	15.50	0.01	0.827	18.73	0.00	14.6	85.4	0.0	-2.41	0.72	0.84	3.42	3.8	0.005	0.74	0.0	0.04	17.59	0.00	2.254	10.79	0.90	12.3	87.7	0.0	-1.07	0.50	0.74	0.86	2.76	122460	15900	60	0	0	0	0	logfile
✔	7A09	11602	2023-04-25	2020-08-07	3.5	3.37	—	3.0	0.010	1.21	1.0	0.06	16.62	0.01	1.928	8.55	0.02	9.0	91.0	0.1	-3.04	0.71	0.73	1.67	2.9	0.005	0.73	0.0	0.04	16.94	0.00	1.910	15.31	0.41	7.9	92.1	0.0	-1.27	0.63	0.76	0.80	1.44	122168	10946	61	1796	20	0	0	logfile
✔	8iKA	35507	2023-04-25	2023-02-28	2.75	2.89	2.81	2.9	0.008	1.22	0.0	0.07	12.95	0.02	2.225	4.42	0.00	1.5	98.5	0.0	-0.45	0.82	0.88	4.57	2.9	0.005	0.55	0.0	0.04	16.79	0.00	2.145	3.77	1.06	1.4	98.6	0.0	1.61	1.50	0.82	0.90	4.07	122040	15900	60	0	0	0	0	logfile
✔	8HR7	34962	2023-04-24	2022-12-15	3.96	4.06	4.11	3.9	0.002	0.52	0.0	0.04	14.32	0.00	1.995	11.90	0.07	3.6	96.4	0.0	-0.25	0.74	0.76	1.48	3.9	0.005	0.67	0.0	0.04	16.33	0.00	2.011	16.92	0.32	5.8	94.2	0.0	0.03	1.11	0.74	0.77	1.28	121662	15154	19	0	0	0	0	logfile
✔	7BoJ	30130	2023-04-25	2020-03-19	2.5	2.54	2.42	2.5	0.007	0.92	0.0	0.06	12.86	0.01	2.271	3.35	0.00	2.4	97.6	0.0	-2.48	0.77	0.86	4.26	2.5	0.005	0.67	0.0	0.05	15.81	0.00	2.132	7.61	2.17	2.2	97.8	0.0	1.73	1.86	0.78	0.88	4.15	121500	15900	60	0	0	0	0	logfile
✔	5TAQ	8382	2023-04-24	2016-09-10	4.1	4.24	4.25	4.1	0.005	0.97	0.0	0.05	10.16	0.01	1.373	4.58	0.43	10.9	88.9	0.2	-5.26	0.76	0.78	—	4.1	0.005	0.79	0.0	0.04	12.30	0.00	2.046	14.49	0.00	12.5	87.4	0.1	-1.92	1.94	0.77	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	5T9V	8376	2023-04-24	2016-09-09	4.4	4.79	4.75	4.5	0.004	0.90	4.0	0.05	9.94	0.01	1.374	5.64	0.54	10.5	89.3	0.2	-4.84	0.81	0.78	—	4.5	0.003	0.72	0.0	0.04	11.70	0.00	2.114	16.07	0.00	10.7	89.1	0.1	-1.35	0.84	0.82	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	5TAL	8378	2023-04-24	2016-09-10	4.3	4.43	4.52	4.3	0.005	0.92	0.0	0.05	10.13	0.01	1.373	5.27	0.62	10.5	89.3	0.1	-5.03	0.79	0.78	—	4.2	0.003	0.73	0.0	0.04	11.96	0.00	2.060	13.63	0.01	11.4	88.4	0.1	-1.55	0.84	0.80	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	5TAM	8379	2023-04-24	2016-09-10	4.3	4.53	4.46	4.3	0.005	0.92	4.0	0.05	9.87	0.01	1.373	5.48	0.35	10.4	89.5	0.2	-4.88	0.81	0.79	—	4.3	0.005	0.79	0.0	0.04	12.08	0.00	2.076	18.45	0.00	12.5	87.3	0.1	-1.92	1.52	0.82	0.81	—	121456	13500	12	0	3720	0	0	logfile
✔	5TAN	8380	2023-04-24	2016-09-10	4.3	4.50	4.44	4.3	0.005	0.91	4.0	0.05	9.88	0.01	1.372	5.67	0.47	10.4	89.4	0.2	-4.91	0.80	0.79	—	4.3	0.004	0.76	0.0	0.04	12.20	0.00	2.099	15.22	0.01	11.3	88.6	0.1	-1.53	1.51	0.81	0.81	—	121456	13500	12	0	3720	0	0	logfile
✔	5TA3	8377	2023-04-24	2016-09-09	4.4	4.71	4.62	4.5	0.004	0.90	0.0	0.05	9.97	0.01	1.374	5.28	0.54	10.8	89.1	0.1	-4.86	0.81	0.78	—	4.5	0.004	0.74	0.0	0.04	11.98	0.00	2.077	17.98	0.00	12.1	87.8	0.1	-1.58	0.87	0.82	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	5TAP	8381	2023-04-24	2016-09-10	4.4	4.55	4.56	4.4	0.004	0.88	4.0	0.05	9.99	0.01	1.373	4.46	0.54	9.9	89.9	0.2	-4.98	0.78	0.77	—	4.4	0.004	0.77	0.0	0.04	12.22	0.00	1.982	15.17	0.02	11.9	88.1	0.1	-1.73	0.87	0.78	0.79	—	121452	13500	12	0	3716	0	0	logfile
✘	5TAV	8386	2023-04-24	2016-09-10	4.8	4.96	5.58	4.7	0.004	0.89	4.0	0.05	9.80	0.01	1.373	4.75	0.39	9.7	90.1	0.2	-4.80	0.77	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile

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