Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6DQV	7984	2023-08-23	2018-06-11	3.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	140358	8752	8	0	8	0	70218	logfile
✔	7oiZ	12936	2023-08-23	2021-05-13	2.9	3.30	—	3.3	0.007	0.83	1.0	0.05	14.08	0.02	1.986	3.75	0.07	3.5	96.4	0.1	-0.63	0.83	0.86	2.92	3.3	0.004	0.64	0.0	0.04	14.43	0.01	1.852	7.61	2.13	3.7	96.3	0.0	0.34	0.36	0.79	0.86	2.41	140295	5604	64	4472	311	0	0	logfile
✔	6V3B	21032	2023-08-24	2019-11-25	2.91	3.09	—	3.0	0.002	0.51	0.0	0.03	14.38	0.01	1.895	5.92	0.05	2.9	97.1	0.1	-1.21	0.83	0.83	2.56	3.0	0.008	0.78	0.0	0.05	16.16	0.01	1.664	7.19	3.52	5.3	94.6	0.1	-0.34	1.58	0.86	0.89	2.58	140290	5457	76	4535	95	398	0	logfile
✔	6VWN	21422	2023-08-23	2020-02-20	3.4	3.71	—	3.2	0.002	0.58	0.0	0.03	14.91	0.00	1.951	7.12	3.85	4.3	95.7	0.0	-3.14	0.83	0.82	1.13	3.2	0.004	0.63	0.0	0.03	16.38	0.00	1.849	16.56	0.58	6.4	93.6	0.0	-1.32	1.24	0.84	0.87	1.12	140036	5341	57	4580	55	0	0	logfile
✘	6DR0	7987	2023-08-23	2018-06-11	4.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139988	8750	8	0	8	0	70013	logfile
✔	6o8W	0656	2023-08-23	2019-03-12	3.53	4.07	—	3.6	0.011	1.07	2.0	0.05	15.84	0.01	2.100	5.95	0.50	14.6	85.2	0.2	-4.56	0.80	0.75	1.33	3.6	0.006	0.72	1.0	0.04	16.52	0.01	1.993	15.94	0.92	12.9	86.9	0.1	-2.58	1.66	0.87	0.84	1.06	139953	5206	55	4623	4	0	0	logfile
✔	8FL9	29271	2023-08-23	2022-12-21	2.75	2.91	2.83	3.0	0.008	0.79	0.0	0.04	13.83	0.03	1.913	2.47	0.00	1.9	98.1	0.0	0.50	0.83	0.83	3.59	3.0	0.006	0.77	0.0	0.04	15.24	0.01	1.875	7.30	2.05	2.8	97.2	0.0	0.64	0.50	0.83	0.86	3.28	139879	7690	65	3636	95	0	0	logfile
✔	7P7U	13245	2023-08-23	2021-07-20	3.1	3.56	3.06	2.0	0.004	0.52	0.0	0.05	13.97	0.00	1.724	6.20	0.42	2.6	97.4	0.1	1.02	0.89	0.90	3.54	2.0	0.006	0.60	0.0	0.04	14.50	0.00	1.821	10.62	0.36	2.9	97.1	0.0	0.84	0.38	0.89	0.91	3.18	139826	5337	64	4549	344	0	0	logfile
✔	7M4Y	23670	2023-08-23	2021-03-22	2.5	1.72	—	1.5	0.006	0.58	2.0	0.03	16.28	0.02	1.783	3.47	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.006	0.83	0.0	0.05	16.57	0.01	1.633	4.85	3.93	3.2	96.7	0.1	0.24	0.30	0.79	0.77	3.86	139817	5511	80	4453	200	1044	0	logfile
✔	8FKW	29259	2023-08-23	2022-12-21	2.5	2.85	2.62	2.8	0.003	0.53	0.0	0.03	12.68	0.00	1.946	1.75	0.01	1.1	98.9	0.0	2.03	0.80	0.82	3.78	2.8	0.004	0.53	0.0	0.04	14.05	0.00	1.915	4.89	1.11	2.0	98.0	0.0	1.84	1.15	0.82	0.86	3.30	139783	10864	65	2499	63	0	0	logfile
✔	6AB5	6999	2023-08-24	2018-07-20	3.7	3.79	—	3.7	0.007	0.96	6.0	0.06	11.27	0.01	1.686	24.89	0.75	5.6	94.4	0.0	-3.80	0.85	0.86	3.48	3.7	0.007	0.66	0.0	0.05	14.07	0.00	2.100	12.10	0.29	7.2	92.8	0.0	-2.04	0.62	0.87	0.87	2.34	139740	18180	60	0	0	0	0	logfile
✔	8FLC	29274	2023-08-23	2022-12-21	2.76	2.78	2.87	2.9	0.007	0.76	0.0	0.03	13.84	0.03	1.975	2.57	0.00	1.5	98.5	0.0	0.65	0.82	0.82	3.53	2.9	0.008	0.85	0.0	0.04	15.56	0.01	1.854	7.77	2.94	3.1	96.9	0.0	0.45	1.19	0.83	0.86	3.33	139595	7626	65	3648	95	0	0	logfile
✔	7AM2	11821	2023-08-23	2020-10-07	3.4	3.52	—	3.4	0.009	0.95	43.0	0.07	20.01	0.01	1.157	23.90	8.65	15.0	84.3	0.7	-5.47	0.64	0.76	1.98	3.4	0.007	0.82	1.0	0.05	19.90	0.01	1.363	20.07	0.72	12.6	87.2	0.2	-3.08	1.82	0.64	0.78	1.80	139523	15384	80	839	42	0	0	logfile
✘	6LQM	0948	2023-08-23	2020-01-14	3.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139464	7108	53	3808	251	0	0	logfile
✔	7M4X	23669	2023-08-23	2021-03-22	2.66	1.75	—	1.6	0.006	0.56	0.0	0.03	15.11	0.01	1.789	3.62	0.00	2.5	97.4	0.1	1.32	0.77	0.73	3.46	1.6	0.004	0.72	0.0	0.04	16.10	0.01	1.684	5.41	2.69	3.2	96.7	0.1	0.26	0.35	0.79	0.76	3.35	139446	5528	73	4453	194	552	0	logfile
✘	6DQS	7983	2023-08-23	2018-06-11	4.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139314	8750	8	0	8	0	69639	logfile
✔	7RoD	24592	2023-08-22	2021-07-30	3.8	4.39	—	3.9	0.004	0.70	0.0	0.05	11.72	0.01	2.388	12.51	0.00	4.3	95.7	0.0	2.79	0.69	0.87	2.22	3.9	0.004	0.82	0.0	0.05	14.24	0.01	2.125	10.38	0.27	6.8	93.2	0.0	3.08	0.50	0.69	0.86	1.59	139258	19082	203	0	0	0	0	logfile
✘	6DRA	7991	2023-08-22	2018-06-11	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139084	8764	8	0	12	0	69544	logfile
✘	6DR2	7988	2023-08-22	2018-06-11	4.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139084	8764	8	0	12	0	69544	logfile
✔	7UVZ	26821	2023-08-22	2022-05-02	2.21	2.55	—	2.3	0.010	0.65	1.0	0.04	15.50	0.02	1.876	4.65	2.03	2.1	97.7	0.2	0.93	0.92	0.93	4.69	2.3	0.008	0.74	0.0	0.05	15.64	0.01	1.737	4.58	2.85	2.9	97.0	0.2	0.89	0.20	0.92	0.94	4.69	138943	5512	59	4453	13	5	0	logfile

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