Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PK6	13466	2023-04-24	2021-08-25	2.15	2.27	2.23	2.3	0.005	0.60	0.0	0.05	17.06	0.01	1.864	4.25	2.22	2.0	98.0	0.0	1.43	0.73	0.77	4.80	2.2	0.003	0.55	0.0	0.04	17.46	0.00	2.152	6.42	2.12	2.2	97.8	0.0	1.53	0.87	0.78	0.88	4.85	120580	15100	20	0	0	0	0	logfile
✔	7BGL	12183	2023-04-26	2021-01-07	2.2	2.57	2.32	2.5	0.007	0.70	0.0	0.08	19.34	0.00	1.980	30.00	2.50	7.3	92.7	0.0	0.56	0.73	0.87	3.07	2.5	0.002	0.59	0.0	0.04	17.17	0.00	2.143	8.93	3.27	7.1	92.9	0.0	-0.12	0.94	0.74	0.90	3.06	120484	15626	104	0	52	0	0	logfile
✔	6M2W	30067	2023-04-23	2020-03-01	3.8	2.59	3.89	2.6	0.006	1.08	0.0	0.05	15.58	0.01	2.276	3.96	3.59	3.1	96.9	0.0	-5.38	0.77	0.64	0.21	2.1	0.003	0.63	0.0	0.04	15.54	0.00	2.105	8.78	0.22	2.8	97.2	0.0	0.30	1.82	0.83	0.79	1.96	120452	14972	16	0	1828	0	0	logfile
✔	8DNA	27560	2023-04-23	2022-07-11	2.77	3.01	2.93	3.0	0.002	0.54	0.0	0.04	13.25	0.00	2.269	6.05	0.00	2.7	97.3	0.0	1.26	0.77	0.83	3.87	3.0	0.004	0.61	0.0	0.04	16.65	0.00	2.303	4.34	0.65	2.8	97.0	0.2	0.54	0.33	0.79	0.87	4.38	120420	15840	60	0	0	0	0	logfile
✔	4UFT	2867	2023-04-23	2015-03-19	4.3	4.24	—	4.2	0.005	0.96	0.0	0.05	11.26	0.00	1.169	8.53	0.31	13.2	83.9	3.0	-4.63	0.54	0.70	—	4.2	0.004	0.78	0.0	0.04	13.25	0.01	2.091	11.84	0.05	8.2	90.7	1.1	-2.58	1.93	0.59	0.79	—	119847	14703	78	234	0	0	0	logfile
✘	7K5B	22679	2023-04-23	2020-09-16	4.5	4.62	—	3.9	0.018	1.93	50.0	0.10	12.72	0.01	0.384	37.45	2.43	4.6	94.6	0.8	-0.04	0.66	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	119573	15602	21	0	18	0	156	logfile
✔	6YLX	10841	2023-04-23	2020-04-07	3.9	3.78	3.86	3.8	0.019	1.57	1.0	0.08	17.82	0.01	1.989	6.50	0.65	3.4	96.6	0.0	-3.91	0.81	0.81	1.40	3.7	0.003	0.75	0.0	0.04	17.39	0.01	2.080	17.10	0.48	7.7	92.2	0.1	-1.54	0.68	0.81	0.82	1.06	118882	7493	47	2757	0	0	0	logfile
✔	6YAM	10761	2023-04-23	2020-03-12	3.6	3.47	—	3.5	0.021	2.06	55.0	0.12	15.03	0.02	0.634	17.64	3.01	10.8	85.2	4.0	-4.49	0.39	0.52	0.80	3.4	0.003	0.74	0.0	0.04	16.51	0.00	2.048	11.35	0.48	9.5	90.2	0.3	-1.76	1.54	0.45	0.63	1.12	118536	9811	51	1863	5	0	0	logfile
✔	6Q16	20556	2023-04-23	2019-08-02	4.1	4.11	—	4.1	0.007	1.05	0.0	0.06	14.24	0.01	2.214	3.99	0.67	3.6	96.4	0.0	-5.13	0.85	0.83	—	4.1	0.003	0.69	0.0	0.04	13.91	0.00	2.101	9.20	0.01	3.7	96.3	0.0	-0.13	0.76	0.86	0.84	—	118198	14787	93	0	0	0	0	logfile
✔	6SKL	10227	2023-04-23	2019-08-16	3.7	3.87	—	3.7	0.013	1.93	50.0	0.11	15.18	0.02	1.901	0.27	0.09	3.3	96.7	0.0	-1.69	0.71	0.72	1.97	3.7	0.004	0.63	0.0	0.04	16.54	0.00	1.787	8.63	0.19	4.0	96.0	0.0	0.38	3.48	0.74	0.78	1.67	118181	7251	24	59	11	0	58997	logfile
✔	6ZMW	11302	2023-04-23	2020-07-04	3.7	3.79	3.57	3.7	0.008	1.25	0.0	0.06	16.23	0.02	1.291	7.20	2.46	6.4	93.3	0.2	-2.63	0.70	0.65	1.27	3.7	0.003	0.78	0.0	0.04	17.05	0.01	1.153	15.83	0.38	5.6	94.3	0.0	-1.44	1.38	0.74	0.74	1.40	118155	11116	62	1822	91	0	0	logfile
✔	6ZP4	11335	2023-04-23	2020-07-08	2.9	2.98	—	2.6	0.007	0.92	0.0	0.05	15.90	0.01	2.079	4.90	0.33	5.3	94.7	0.1	-3.82	0.84	0.81	2.89	2.6	0.005	0.71	0.0	0.04	16.50	0.00	1.891	10.59	2.41	5.4	94.6	0.0	-0.43	0.45	0.89	0.88	2.55	117784	10408	59	1796	6	0	0	logfile
✔	7TDH	25829	2023-04-23	2021-12-31	4.0	4.95	4.67	4.5	0.003	0.77	0.0	0.04	13.63	0.00	2.254	4.64	0.00	5.1	94.9	0.0	-1.74	0.84	0.67	—	4.5	0.030	2.65	66.0	0.11	19.67	0.02	0.888	153.73	3.43	43.9	54.5	1.5	-7.26	2.44	0.88	0.83	—	117532	13060	8	0	3616	0	0	logfile
✔	7TDG	25828	2023-04-23	2021-12-31	3.8	4.00	3.85	3.8	0.086	0.81	1.0	0.04	13.97	0.00	0.831	7.84	0.28	6.6	93.4	0.1	-0.49	0.83	0.79	0.99	3.8	0.056	3.18	114.0	0.16	19.71	0.02	1.714	88.48	3.87	38.2	59.5	2.3	-7.40	1.18	0.86	0.86	1.36	117345	12936	8	0	3624	0	0	logfile
✔	7SC9	25030	2023-04-23	2021-09-27	2.6	3.71	2.70	3.0	0.005	0.63	0.0	0.04	13.52	0.01	2.039	38.58	0.01	2.7	97.2	0.0	2.39	0.80	0.82	1.56	3.0	0.004	0.81	0.0	0.04	16.15	0.00	2.009	19.29	1.89	2.8	97.1	0.1	1.36	0.60	0.80	0.84	1.23	117262	14948	164	0	76	0	0	logfile
✔	3JCS	6583	2023-04-23	2016-01-21	2.8	3.07	—	3.0	0.009	0.98	1.0	0.05	19.57	0.03	1.093	24.89	1.41	11.8	88.0	0.2	-5.35	0.72	0.78	3.98	3.0	0.007	0.88	0.0	0.04	19.86	0.01	1.859	18.52	3.13	10.9	89.1	0.1	-2.74	0.51	0.71	0.80	2.76	117257	5847	74	3420	109	144	0	logfile
✔	7TDK	25832	2023-04-23	2021-12-31	3.8	4.07	3.85	3.8	0.004	0.87	0.0	0.04	15.75	0.01	2.210	4.97	0.46	5.7	94.1	0.1	-0.20	0.85	0.77	1.07	3.8	0.051	3.21	71.0	0.14	19.99	0.02	1.573	100.23	3.61	38.4	59.1	2.5	-7.48	2.34	0.89	0.86	1.15	117136	12936	8	0	3616	0	0	logfile
✔	7TDi	25830	2023-04-23	2021-12-31	3.3	3.81	3.62	3.6	0.005	0.81	0.0	0.04	16.22	0.01	2.159	4.24	0.85	4.4	95.5	0.1	-0.18	0.82	0.72	0.41	3.6	0.060	3.45	153.0	0.17	19.75	0.02	1.655	78.91	3.69	33.8	63.9	2.3	-7.06	1.45	0.89	0.87	1.83	117132	12936	8	0	3616	0	0	logfile
✔	7TDJ	25831	2023-04-23	2021-12-31	3.7	3.93	3.79	3.8	0.005	0.91	0.0	0.04	15.74	0.01	2.223	5.62	0.37	6.0	93.9	0.2	-0.38	0.85	0.77	1.01	3.7	0.056	3.34	152.0	0.16	20.01	0.02	1.738	94.23	2.94	37.0	60.2	2.7	-7.31	1.34	0.89	0.86	1.52	117112	12932	12	0	3616	8	0	logfile
✔	8ESR	24422	2023-04-23	2022-10-14	3.2	3.24	—	3.0	0.002	0.47	0.0	0.03	15.69	0.00	2.118	7.71	0.28	3.0	96.9	0.1	0.71	0.76	0.74	2.20	3.0	0.005	0.57	0.0	0.04	15.74	0.00	2.095	10.25	0.32	4.1	95.9	0.1	1.10	0.34	0.78	0.77	2.07	116762	9286	57	2372	1	0	0	logfile

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