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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7B0N | 11969 | 2023-11-18 | 2020-11-20 | 3.7 | 3.22 | 3.70 | 3.2 | 0.018 | 1.20 | 0.0 | 0.45 | 14.98 | 0.01 | 0.019 | 3.79 | 0.07 | 5.5 | 94.4 | 0.1 | -2.92 | 0.59 | 0.74 | 2.70 | 3.2 | 0.005 | 0.85 | 0.0 | 0.13 | 16.25 | 0.00 | 1.921 | 9.09 | 0.10 | 5.2 | 94.7 | 0.0 | -0.27 | 2.50 | 0.60 | 0.75 | 2.35 | 129439 | 8092 | 62 | 0 | 38 | 0 | 64087 | logfile |
✔ | 5GAK | 3227 | 2023-11-18 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 20.85 | 0.01 | 0.816 | 23.89 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 4.0 | 0.003 | 0.83 | 0.0 | 0.04 | 19.62 | 0.01 | 1.977 | 24.30 | 0.53 | 9.4 | 90.1 | 0.4 | -2.72 | 1.99 | 0.33 | 0.25 | 0.07 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✔ | 6N8M | 0372 | 2023-11-18 | 2018-11-29 | 3.5 | 3.75 | — | 3.6 | 0.006 | 0.86 | 1.0 | 0.04 | 14.88 | 0.01 | 1.297 | 2.87 | 0.43 | 6.6 | 93.0 | 0.4 | -4.51 | 0.81 | 0.88 | 3.49 | 3.6 | 0.009 | 0.79 | 0.0 | 0.04 | 16.06 | 0.01 | 1.991 | 9.13 | 1.18 | 8.7 | 91.1 | 0.2 | -1.55 | 0.56 | 0.81 | 0.89 | 2.60 | 128867 | 6708 | 47 | 3482 | 302 | 0 | 0 | logfile |
✔ | 7YFZ | 33802 | 2023-11-18 | 2022-07-09 | 3.19 | 2.87 | 2.92 | 2.9 | 0.006 | 0.86 | 3.0 | 0.05 | 12.31 | 0.01 | 1.749 | 18.46 | 0.20 | 6.2 | 93.6 | 0.2 | -0.92 | 0.62 | 0.79 | 3.45 | 2.9 | 0.003 | 0.61 | 0.0 | 0.04 | 14.55 | 0.00 | 1.817 | 13.49 | 0.38 | 5.3 | 94.6 | 0.1 | 0.30 | 2.24 | 0.61 | 0.82 | 3.13 | 128850 | 8814 | 42 | 0 | 0 | 0 | 61470 | logfile |
✔ | 6QiK | 4560 | 2023-11-18 | 2019-01-20 | 3.1 | 3.35 | — | 3.3 | 0.014 | 0.99 | 2.0 | 0.06 | 15.84 | 0.01 | 1.872 | 3.52 | 0.80 | 8.3 | 91.5 | 0.2 | -4.17 | 0.84 | 0.86 | 3.77 | 3.3 | 0.004 | 0.56 | 0.0 | 0.04 | 16.02 | 0.00 | 2.053 | 7.73 | 0.38 | 5.6 | 94.4 | 0.0 | -1.37 | 0.43 | 0.85 | 0.89 | 3.21 | 128569 | 6843 | 53 | 3423 | 217 | 0 | 0 | logfile |
✔ | 7U05 | 26254 | 2023-11-18 | 2022-02-17 | 3.7 | 3.56 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 14.14 | 0.01 | 2.019 | 4.02 | 0.07 | 9.7 | 90.2 | 0.1 | -1.55 | 0.51 | 0.72 | 2.03 | 3.5 | 0.004 | 0.62 | 0.0 | 0.04 | 16.50 | 0.00 | 1.833 | 12.03 | 0.77 | 10.6 | 89.3 | 0.1 | -1.25 | 0.57 | 0.53 | 0.74 | 2.00 | 127996 | 7632 | 32 | 0 | 722 | 0 | 62402 | logfile |
✔ | 7ZS5 | 14926 | 2023-11-17 | 2022-05-06 | 3.2 | 3.53 | 3.32 | 3.3 | 0.002 | 0.55 | 0.0 | 0.03 | 16.11 | 0.00 | 1.329 | 12.45 | 0.02 | 2.5 | 97.1 | 0.4 | -1.60 | 0.84 | 0.78 | 1.80 | 3.3 | 0.004 | 0.67 | 0.0 | 0.04 | 16.90 | 0.00 | 1.952 | 15.89 | 0.71 | 8.0 | 91.6 | 0.4 | -1.38 | 0.37 | 0.86 | 0.81 | 1.67 | 127849 | 6416 | 50 | 3603 | 24 | 0 | 0 | logfile |
✔ | 7oHU | 12909 | 2023-11-17 | 2021-05-11 | 3.7 | 4.68 | 3.77 | 3.4 | 0.008 | 0.53 | 1.0 | 0.03 | 16.12 | 0.00 | 1.811 | 5.44 | 0.45 | 3.5 | 96.5 | 0.0 | 1.01 | 0.83 | 0.76 | 1.33 | 3.4 | 0.009 | 0.69 | 1.0 | 0.04 | 17.56 | 0.00 | 1.741 | 22.18 | 0.53 | 9.1 | 90.9 | 0.0 | -1.10 | 1.33 | 0.85 | 0.81 | 1.59 | 127652 | 4202 | 29 | 1840 | 2 | 0 | 54773 | logfile |
✔ | 7Lii | 23379 | 2023-11-18 | 2021-01-27 | 3.55 | 3.83 | — | 3.7 | 0.007 | 0.90 | 0.0 | 0.06 | 13.86 | 0.00 | 2.299 | 5.65 | 0.87 | 9.9 | 90.1 | 0.0 | -2.72 | 0.82 | 0.84 | 2.16 | 3.7 | 0.006 | 0.75 | 0.0 | 0.05 | 15.30 | 0.00 | 2.260 | 3.23 | 0.42 | 10.3 | 89.7 | 0.0 | -2.13 | 0.35 | 0.83 | 0.84 | 1.83 | 127320 | 15480 | 60 | 0 | 60 | 0 | 0 | logfile |
✔ | 7LiT | 23385 | 2023-11-17 | 2021-01-27 | 2.53 | 2.69 | — | 2.8 | 0.008 | 0.76 | 0.0 | 0.05 | 13.58 | 0.00 | 2.309 | 1.69 | 0.44 | 3.9 | 96.1 | 0.0 | 0.35 | 0.71 | 0.85 | 4.23 | 2.7 | 0.003 | 0.55 | 0.0 | 0.04 | 16.23 | 0.00 | 2.168 | 2.50 | 1.36 | 3.3 | 96.7 | 0.0 | 0.89 | 1.75 | 0.73 | 0.88 | 3.70 | 126840 | 15480 | 60 | 0 | 60 | 0 | 0 | logfile |
✔ | 7NPU | 12521 | 2023-11-17 | 2021-02-28 | 4.48 | 4.74 | 4.43 | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 11.87 | 0.01 | 2.086 | 1.37 | 0.37 | 1.8 | 98.1 | 0.1 | -0.61 | 0.66 | 0.68 | — | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 12.55 | 0.00 | 1.902 | 8.02 | 0.00 | 2.8 | 97.2 | 0.0 | 1.44 | 3.28 | 0.69 | 0.76 | — | 126727 | 8230 | 24 | 0 | 0 | 0 | 64397 | logfile |
✔ | 5T6R | 8368 | 2023-11-17 | 2016-09-01 | 4.2 | 4.31 | 4.24 | 4.2 | 0.007 | 1.05 | 1.0 | 0.09 | 16.99 | 0.00 | 1.229 | 1.49 | 5.55 | 7.5 | 90.6 | 1.9 | -3.58 | 0.82 | 0.80 | — | 4.2 | 0.006 | 0.85 | 0.0 | 0.04 | 16.55 | 0.01 | 1.754 | 18.09 | 0.06 | 9.6 | 89.7 | 0.6 | -1.89 | 1.61 | 0.84 | 0.82 | — | 126616 | 6441 | 51 | 3483 | 299 | 12 | 0 | logfile |
✔ | 6AZ3 | 7025 | 2023-11-17 | 2017-09-09 | 2.5 | 3.08 | — | 3.1 | 0.012 | 1.29 | 0.0 | 0.06 | 16.73 | 0.03 | 1.349 | 4.53 | 0.96 | 6.4 | 93.4 | 0.2 | -4.53 | 0.54 | 0.78 | 5.15 | 3.1 | 0.004 | 0.85 | 0.0 | 0.04 | 17.47 | 0.01 | 1.958 | 9.08 | 3.04 | 6.4 | 93.5 | 0.1 | -1.44 | 0.34 | 0.55 | 0.80 | 3.91 | 126561 | 6390 | 91 | 3507 | 44 | 1019 | 0 | logfile |
✘ | 8APD | 15566 | 2023-11-18 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APC | 15565 | 2023-11-18 | 2022-08-09 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 59 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APB | 15564 | 2023-11-18 | 2022-08-09 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 61 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APE | 15567 | 2023-11-18 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APA | 15563 | 2023-11-18 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APK | 15573 | 2023-11-18 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126493 | 7873 | 61 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APG | 15570 | 2023-11-18 | 2022-08-09 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 61 | 0 | 36 | 0 | 62387 | logfile |