Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7B0N	11969	2023-11-18	2020-11-20	3.7	3.22	3.70	3.2	0.018	1.20	0.0	0.45	14.98	0.01	0.019	3.79	0.07	5.5	94.4	0.1	-2.92	0.59	0.74	2.70	3.2	0.005	0.85	0.0	0.13	16.25	0.00	1.921	9.09	0.10	5.2	94.7	0.0	-0.27	2.50	0.60	0.75	2.35	129439	8092	62	0	38	0	64087	logfile
✔	5GAK	3227	2023-11-18	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.89	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	4.0	0.003	0.83	0.0	0.04	19.62	0.01	1.977	24.30	0.53	9.4	90.1	0.4	-2.72	1.99	0.33	0.25	0.07	128975	6434	50	3597	234	0	0	logfile
✔	6N8M	0372	2023-11-18	2018-11-29	3.5	3.75	—	3.6	0.006	0.86	1.0	0.04	14.88	0.01	1.297	2.87	0.43	6.6	93.0	0.4	-4.51	0.81	0.88	3.49	3.6	0.009	0.79	0.0	0.04	16.06	0.01	1.991	9.13	1.18	8.7	91.1	0.2	-1.55	0.56	0.81	0.89	2.60	128867	6708	47	3482	302	0	0	logfile
✔	7YFZ	33802	2023-11-18	2022-07-09	3.19	2.87	2.92	2.9	0.006	0.86	3.0	0.05	12.31	0.01	1.749	18.46	0.20	6.2	93.6	0.2	-0.92	0.62	0.79	3.45	2.9	0.003	0.61	0.0	0.04	14.55	0.00	1.817	13.49	0.38	5.3	94.6	0.1	0.30	2.24	0.61	0.82	3.13	128850	8814	42	0	0	0	61470	logfile
✔	6QiK	4560	2023-11-18	2019-01-20	3.1	3.35	—	3.3	0.014	0.99	2.0	0.06	15.84	0.01	1.872	3.52	0.80	8.3	91.5	0.2	-4.17	0.84	0.86	3.77	3.3	0.004	0.56	0.0	0.04	16.02	0.00	2.053	7.73	0.38	5.6	94.4	0.0	-1.37	0.43	0.85	0.89	3.21	128569	6843	53	3423	217	0	0	logfile
✔	7U05	26254	2023-11-18	2022-02-17	3.7	3.56	—	3.5	0.004	0.81	0.0	0.05	14.14	0.01	2.019	4.02	0.07	9.7	90.2	0.1	-1.55	0.51	0.72	2.03	3.5	0.004	0.62	0.0	0.04	16.50	0.00	1.833	12.03	0.77	10.6	89.3	0.1	-1.25	0.57	0.53	0.74	2.00	127996	7632	32	0	722	0	62402	logfile
✔	7ZS5	14926	2023-11-17	2022-05-06	3.2	3.53	3.32	3.3	0.002	0.55	0.0	0.03	16.11	0.00	1.329	12.45	0.02	2.5	97.1	0.4	-1.60	0.84	0.78	1.80	3.3	0.004	0.67	0.0	0.04	16.90	0.00	1.952	15.89	0.71	8.0	91.6	0.4	-1.38	0.37	0.86	0.81	1.67	127849	6416	50	3603	24	0	0	logfile
✔	7oHU	12909	2023-11-17	2021-05-11	3.7	4.68	3.77	3.4	0.008	0.53	1.0	0.03	16.12	0.00	1.811	5.44	0.45	3.5	96.5	0.0	1.01	0.83	0.76	1.33	3.4	0.009	0.69	1.0	0.04	17.56	0.00	1.741	22.18	0.53	9.1	90.9	0.0	-1.10	1.33	0.85	0.81	1.59	127652	4202	29	1840	2	0	54773	logfile
✔	7Lii	23379	2023-11-18	2021-01-27	3.55	3.83	—	3.7	0.007	0.90	0.0	0.06	13.86	0.00	2.299	5.65	0.87	9.9	90.1	0.0	-2.72	0.82	0.84	2.16	3.7	0.006	0.75	0.0	0.05	15.30	0.00	2.260	3.23	0.42	10.3	89.7	0.0	-2.13	0.35	0.83	0.84	1.83	127320	15480	60	0	60	0	0	logfile
✔	7LiT	23385	2023-11-17	2021-01-27	2.53	2.69	—	2.8	0.008	0.76	0.0	0.05	13.58	0.00	2.309	1.69	0.44	3.9	96.1	0.0	0.35	0.71	0.85	4.23	2.7	0.003	0.55	0.0	0.04	16.23	0.00	2.168	2.50	1.36	3.3	96.7	0.0	0.89	1.75	0.73	0.88	3.70	126840	15480	60	0	60	0	0	logfile
✔	7NPU	12521	2023-11-17	2021-02-28	4.48	4.74	4.43	3.8	0.008	1.19	0.0	0.06	11.87	0.01	2.086	1.37	0.37	1.8	98.1	0.1	-0.61	0.66	0.68	—	3.8	0.003	0.60	0.0	0.04	12.55	0.00	1.902	8.02	0.00	2.8	97.2	0.0	1.44	3.28	0.69	0.76	—	126727	8230	24	0	0	0	64397	logfile
✔	5T6R	8368	2023-11-17	2016-09-01	4.2	4.31	4.24	4.2	0.007	1.05	1.0	0.09	16.99	0.00	1.229	1.49	5.55	7.5	90.6	1.9	-3.58	0.82	0.80	—	4.2	0.006	0.85	0.0	0.04	16.55	0.01	1.754	18.09	0.06	9.6	89.7	0.6	-1.89	1.61	0.84	0.82	—	126616	6441	51	3483	299	12	0	logfile
✔	6AZ3	7025	2023-11-17	2017-09-09	2.5	3.08	—	3.1	0.012	1.29	0.0	0.06	16.73	0.03	1.349	4.53	0.96	6.4	93.4	0.2	-4.53	0.54	0.78	5.15	3.1	0.004	0.85	0.0	0.04	17.47	0.01	1.958	9.08	3.04	6.4	93.5	0.1	-1.44	0.34	0.55	0.80	3.91	126561	6390	91	3507	44	1019	0	logfile
✘	8APD	15566	2023-11-18	2022-08-09	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126495	7873	60	0	36	0	62392	logfile
✘	8APC	15565	2023-11-18	2022-08-09	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126495	7873	59	0	36	0	62392	logfile
✘	8APB	15564	2023-11-18	2022-08-09	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126495	7873	61	0	36	0	62392	logfile
✘	8APE	15567	2023-11-18	2022-08-09	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126495	7873	60	0	36	0	62392	logfile
✘	8APA	15563	2023-11-18	2022-08-09	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126495	7873	60	0	36	0	62392	logfile
✘	8APK	15573	2023-11-18	2022-08-09	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126493	7873	61	0	36	0	62392	logfile
✘	8APG	15570	2023-11-18	2022-08-09	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126490	7873	61	0	36	0	62387	logfile

• ← previous
• Page 7 of 528
• next →