Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RVW	4444	2023-08-11	2019-06-03	3.7	3.98	—	3.9	0.008	0.66	0.0	0.05	14.12	0.00	2.263	1.75	0.00	2.0	98.0	0.0	-2.37	0.79	0.82	2.87	4.0	0.007	0.74	0.0	0.05	18.10	0.00	2.058	12.50	1.53	2.3	97.7	0.0	-1.61	3.20	0.80	0.84	3.33	110208	14520	384	0	120	0	0	logfile
✔	6RVV	4443	2023-08-11	2019-06-03	3.7	3.95	—	3.9	0.006	0.60	0.0	0.05	13.27	0.00	2.245	2.48	0.00	2.0	98.0	0.0	-2.44	0.78	0.82	2.75	3.9	0.005	0.67	0.0	0.05	18.05	0.00	2.039	11.35	1.28	0.4	99.6	0.0	-0.79	1.07	0.79	0.83	2.94	110208	14520	384	0	120	0	0	logfile
✔	5W7V	8781	2023-08-16	2017-06-20	3.8	3.42	—	3.5	0.007	0.77	0.0	0.06	12.79	0.00	2.365	15.84	0.00	1.4	98.6	0.0	-2.52	0.47	0.74	3.24	3.4	0.006	0.83	0.0	0.06	15.83	0.00	2.285	7.47	2.21	3.3	96.7	0.0	-0.77	1.27	0.54	0.79	3.99	20430	2640	270	0	0	0	0	logfile
✔	6SAG	10130	2023-08-09	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.66	0.0	0.04	15.32	0.01	2.026	3.22	1.43	2.9	97.1	0.0	1.37	0.73	0.60	0.90	6.95	54080	6120	240	120	240	2840	0	logfile
✔	7o0V	12680	2023-08-10	2021-03-27	2.5	2.50	—	2.4	0.018	4.38	0.0	0.06	24.68	0.01	2.117	1.81	0.31	1.2	98.8	0.0	1.63	0.82	0.86	5.41	2.4	0.007	1.84	0.0	0.04	22.08	0.00	2.013	8.44	1.38	1.0	99.0	0.0	3.41	0.50	0.84	0.89	4.41	55475	4947	238	0	317	489	0	logfile
✔	7o0X	12682	2023-08-10	2021-03-28	2.44	2.39	—	2.3	0.018	4.34	0.0	0.06	24.66	0.01	2.099	1.65	0.23	1.4	98.6	0.0	1.33	0.82	0.86	5.55	2.3	0.004	1.73	0.0	0.04	20.98	0.00	2.058	6.64	1.13	1.0	99.0	0.0	3.90	0.49	0.83	0.88	4.22	56446	5072	237	0	316	521	0	logfile
✔	7o0W	12681	2023-08-10	2021-03-27	2.47	2.42	—	2.3	0.018	4.34	0.0	0.06	24.63	0.01	2.010	1.98	0.28	1.4	98.6	0.0	1.25	0.82	0.86	5.37	2.3	0.003	1.68	0.0	0.03	21.17	0.00	1.957	7.86	0.98	0.9	99.1	0.0	3.96	1.12	0.83	0.88	3.91	56476	5076	236	0	320	406	0	logfile
✔	7o0U	12679	2023-08-10	2021-03-27	2.35	2.42	—	2.3	0.018	4.37	0.0	0.06	24.75	0.01	2.121	1.73	0.41	1.2	98.8	0.0	1.39	0.83	0.86	5.52	2.3	0.003	1.70	0.0	0.03	21.23	0.00	1.834	7.34	1.15	0.9	99.1	0.0	4.12	2.04	0.84	0.89	4.24	55758	4972	236	0	320	491	0	logfile
✔	7RoD	24592	2023-08-22	2021-07-30	3.8	4.39	—	3.9	0.004	0.70	0.0	0.05	11.72	0.01	2.388	12.51	0.00	4.3	95.7	0.0	2.79	0.69	0.87	2.22	3.9	0.004	0.82	0.0	0.05	14.24	0.01	2.125	10.38	0.27	6.8	93.2	0.0	3.08	0.50	0.69	0.86	1.59	139258	19082	203	0	0	0	0	logfile
✔	7Ro4	24587	2023-08-20	2021-07-30	4.3	4.51	—	4.2	0.006	0.78	0.0	0.05	13.23	0.01	2.237	17.04	4.00	5.4	94.6	0.0	0.68	0.68	0.85	—	4.2	0.004	0.79	0.0	0.05	11.12	0.01	2.104	13.80	0.01	6.1	93.9	0.0	1.92	0.60	0.68	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7Ro6	24589	2023-08-21	2021-07-30	4.1	4.30	—	3.8	0.006	0.69	0.0	0.04	12.71	0.01	2.220	13.37	1.33	5.4	94.6	0.0	1.57	0.68	0.86	—	3.8	0.003	0.72	0.0	0.05	12.01	0.01	2.189	10.14	0.00	4.5	95.5	0.0	3.10	0.56	0.68	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7RoC	24591	2023-08-21	2021-07-30	3.7	3.89	—	3.7	0.003	0.68	0.0	0.05	11.37	0.01	2.563	18.31	0.00	5.4	94.6	0.0	3.01	0.69	0.84	1.59	3.7	0.003	0.76	0.0	0.04	14.35	0.01	2.157	9.23	0.53	5.0	95.0	0.0	3.21	1.21	0.69	0.85	1.39	137200	18800	200	0	0	0	0	logfile
✔	7RoE	24593	2023-08-20	2021-07-30	3.7	3.80	—	3.5	0.006	0.69	0.0	0.04	12.63	0.01	2.266	11.99	4.00	6.7	93.3	0.0	1.70	0.67	0.86	1.96	3.5	0.004	0.73	0.0	0.04	14.52	0.01	2.191	10.10	0.58	5.7	94.2	0.1	3.40	0.52	0.67	0.85	1.77	137200	18800	200	0	0	0	0	logfile
✔	7Ro5	24588	2023-08-21	2021-07-30	4.1	4.27	—	3.9	0.005	0.85	0.0	0.05	13.48	0.01	2.235	12.45	4.00	4.3	95.7	0.0	1.05	0.68	0.85	—	3.9	0.004	0.76	0.0	0.05	11.70	0.01	2.184	12.71	0.00	5.8	94.2	0.0	2.75	0.56	0.68	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7RoB	24590	2023-08-21	2021-07-30	3.9	4.43	—	4.1	0.004	0.71	0.0	0.04	13.08	0.01	2.151	11.28	4.00	4.3	95.7	0.0	1.28	0.68	0.85	2.11	4.1	0.004	0.94	1.0	0.05	14.23	0.01	2.079	12.67	0.64	5.3	94.7	0.0	2.47	1.23	0.68	0.85	1.54	137200	18800	200	0	0	0	0	logfile
✔	7RoH	24595	2023-08-21	2021-07-30	4.0	4.01	—	3.8	0.005	0.67	0.0	0.04	12.43	0.01	2.350	11.51	2.67	5.4	94.6	0.0	0.83	0.67	0.85	—	3.8	0.004	0.75	0.0	0.04	14.46	0.01	2.199	10.84	0.38	5.5	94.5	0.0	3.00	1.24	0.67	0.84	—	137200	18800	200	0	0	0	0	logfile
✔	7Roi	24597	2023-08-21	2021-07-30	4.3	4.43	—	4.1	0.004	0.66	0.0	0.05	12.41	0.01	2.400	9.73	1.33	4.3	95.7	0.0	1.63	0.67	0.85	—	4.1	0.004	0.77	0.0	0.05	11.38	0.01	2.186	11.55	0.00	4.3	95.7	0.0	2.65	0.64	0.67	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7Ro3	24586	2023-08-21	2021-07-30	4.8	4.78	—	4.4	0.004	0.65	0.0	0.05	12.47	0.01	2.358	11.99	1.33	4.3	95.7	0.0	1.70	0.67	0.84	—	4.4	0.005	1.03	0.0	0.05	11.66	0.01	2.227	24.92	0.00	6.5	93.5	0.0	0.29	2.18	0.68	0.84	—	137200	18800	200	0	0	0	0	logfile
✔	7RoG	24594	2023-08-20	2021-07-30	3.8	4.00	—	3.7	0.007	0.74	0.0	0.05	12.33	0.01	2.355	14.52	1.33	5.4	94.6	0.0	1.76	0.67	0.85	1.80	3.8	0.004	0.77	0.0	0.04	14.26	0.01	2.175	11.90	0.23	4.4	95.6	0.0	3.10	1.65	0.66	0.84	2.05	137200	18800	200	0	0	0	0	logfile
✔	5VLZ	8709	2023-08-24	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	4.4	0.002	0.73	0.0	0.00	4.75	0.00	2.276	0.95	0.00	4.8	95.2	0.0	-0.40	2.02	0.83	0.78	—	96897	24179	181	0	0	0	0	logfile

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