Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Roi	24597	2023-11-20	2021-07-30	4.3	4.43	—	4.1	0.004	0.66	0.0	0.05	12.41	0.01	2.400	9.73	1.33	4.3	95.7	0.0	1.63	0.67	0.85	—	4.1	0.004	0.77	0.0	0.05	11.38	0.01	2.186	11.55	0.00	4.3	95.7	0.0	2.65	0.64	0.67	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7Ro3	24586	2023-11-19	2021-07-30	4.8	4.78	—	4.4	0.004	0.65	0.0	0.05	12.47	0.01	2.358	11.99	1.33	4.3	95.7	0.0	1.70	0.67	0.84	—	4.4	0.005	1.03	0.0	0.05	11.66	0.01	2.227	24.92	0.00	6.5	93.5	0.0	0.29	2.18	0.68	0.84	—	137200	18800	200	0	0	0	0	logfile
✘	5VLZ	8709	2023-11-21	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96897	24179	181	0	0	0	0	logfile
✔	3JAU	6366	2023-11-15	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✔	7CKB	30384	2023-11-15	2020-07-16	3.24	3.29	—	3.2	0.008	0.88	0.0	0.05	16.33	0.01	2.160	6.96	1.05	4.0	96.0	0.0	-0.87	0.85	0.88	2.17	3.2	0.006	0.72	0.0	0.05	17.10	0.00	2.145	7.26	1.43	2.5	97.5	0.0	-0.14	0.28	0.85	0.90	2.74	114840	15840	180	0	0	0	0	logfile
✘	7UJL	26566	2023-11-20	2022-03-31	3.3	3.53	3.27	3.4	0.015	2.11	120.0	0.14	20.03	0.02	1.760	6.20	0.00	5.1	94.9	0.0	-1.45	0.58	0.70	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	86820	9660	180	480	0	0	0	logfile
✔	6RRS	4989	2023-11-21	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.004	0.84	0.0	0.00	7.15	0.00	2.195	1.79	0.00	15.0	85.0	0.0	-1.14	2.03	0.80	0.71	—	93060	23220	180	0	0	0	0	logfile
✘	8BD3	15973	2023-11-16	2022-10-18	2.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	117990	10804	166	0	722	224	0	logfile
✔	7VEA	31944	2023-11-14	2021-09-08	3.7	3.55	—	3.5	0.009	1.13	0.0	0.04	13.48	0.00	2.098	6.48	0.58	1.5	98.4	0.0	2.51	0.65	0.78	1.44	3.5	0.004	0.77	0.0	0.04	16.55	0.00	2.063	15.67	0.57	2.2	97.7	0.0	2.25	1.43	0.69	0.77	1.04	111542	15594	165	0	84	0	0	logfile
✔	7SC9	25030	2023-11-16	2021-09-27	2.6	3.71	2.70	3.0	0.005	0.63	0.0	0.04	13.52	0.01	2.039	38.58	0.01	2.7	97.2	0.0	2.39	0.80	0.82	1.56	3.0	0.004	0.81	0.0	0.04	16.15	0.00	2.009	19.29	1.89	2.8	97.1	0.1	1.36	0.60	0.80	0.84	1.23	117262	14948	164	0	76	0	0	logfile
✔	7SC7	25028	2023-11-13	2021-09-27	2.8	3.66	—	3.3	0.007	1.08	1.0	0.06	14.67	0.01	2.240	6.50	1.49	2.4	97.6	0.0	-1.25	0.73	0.87	1.85	3.2	0.005	0.99	1.0	0.05	16.95	0.01	1.998	23.67	2.66	3.2	96.8	0.0	0.75	0.70	0.72	0.88	1.52	107930	13756	156	0	72	0	0	logfile
✔	6WL7	21816	2023-11-21	2020-04-18	3.8	4.18	—	3.9	0.006	0.58	0.0	0.04	14.93	0.00	2.204	8.50	0.00	1.2	98.8	0.0	3.28	0.79	0.87	2.36	3.9	0.005	0.97	0.0	0.04	17.47	0.00	2.173	14.78	2.10	0.0	100.0	0.0	4.93	1.01	0.79	0.86	1.94	34350	4350	150	0	0	0	0	logfile
✔	7LQH	23486	2023-11-15	2021-02-13	3.4	3.12	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.098	31.15	14.58	0.0	100.0	0.0	-5.94	0.59	0.80	5.83	3.2	0.111	4.25	190.0	0.31	24.04	0.02	1.610	112.99	4.28	40.1	59.5	0.3	-8.01	3.50	0.66	0.87	3.32	12096	1152	144	0	0	0	0	logfile
✔	7LQG	23485	2023-11-15	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.1	0.110	4.37	186.0	0.30	23.67	0.02	1.819	120.04	3.70	35.6	64.4	0.0	-8.04	1.65	0.66	0.86	3.86	12096	1152	144	0	0	0	0	logfile
✘	5XNL	6741	2023-11-22	2017-05-23	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98986	9364	136	0	490	1076	0	logfile
✘	7Pi0	13429	2023-11-19	2021-08-19	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77465	7442	133	0	354	1724	0	logfile
✘	6KAC	9955	2023-11-19	2019-06-21	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77947	7858	126	0	318	595	0	logfile
✘	7UMH	26601	2023-11-21	2022-04-07	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	140516	12747	124	0	798	461	0	logfile
✘	7Pi5	13430	2023-11-19	2021-08-19	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76287	7455	123	0	343	718	0	logfile
✘	6TGY	10501	2023-11-21	2019-11-18	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-5.42	—	—	3.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96960	12480	120	0	0	0	0	logfile

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