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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7N8o | 24239 | 2023-04-20 | 2021-06-15 | 1.93 | 1.73 | — | 1.9 | 0.025 | 2.40 | 0.0 | 0.11 | 20.28 | 0.01 | 1.522 | 14.77 | 1.91 | 3.0 | 96.9 | 0.1 | 0.75 | 0.73 | 0.75 | 5.48 | 1.8 | 0.004 | 0.81 | 0.0 | 0.05 | 18.74 | 0.01 | 2.000 | 12.74 | 1.66 | 3.0 | 97.0 | 0.0 | 0.83 | 0.34 | 0.77 | 0.80 | 5.41 | 54656 | 5544 | 113 | 0 | 228 | 1236 | 0 | logfile |
✔ | 7R46 | 14277 | 2023-04-24 | 2022-02-08 | 2.4 | 2.44 | — | 2.5 | 0.008 | 0.81 | 0.0 | 0.85 | 15.41 | 0.01 | 1.964 | 3.47 | 0.01 | 2.9 | 97.1 | 0.0 | 0.30 | 0.70 | 0.90 | 5.72 | 2.4 | 0.007 | 1.30 | 0.0 | 0.25 | 16.54 | 0.00 | 2.203 | 5.23 | 0.51 | 1.8 | 98.2 | 0.0 | 1.76 | 0.35 | 0.70 | 0.90 | 4.84 | 67614 | 8100 | 113 | 0 | 51 | 859 | 0 | logfile |
✘ | 5XTH | 6775 | 2023-04-22 | 2017-06-19 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115642 | 14193 | 113 | 0 | 63 | 0 | 0 | logfile |
✔ | 7R44 | 14266 | 2023-04-25 | 2022-02-08 | 2.4 | 2.43 | — | 2.4 | 0.008 | 0.81 | 0.0 | 0.84 | 15.16 | 0.00 | 1.908 | 3.31 | 0.00 | 2.5 | 97.5 | 0.0 | 0.40 | 0.70 | 0.90 | 6.05 | 2.5 | 0.007 | 1.30 | 0.0 | 0.25 | 16.34 | 0.00 | 1.997 | 4.87 | 0.60 | 1.6 | 98.4 | 0.0 | 1.68 | 0.32 | 0.70 | 0.90 | 5.12 | 68213 | 8163 | 113 | 0 | 50 | 905 | 0 | logfile |
✔ | 7R4G | 14307 | 2023-04-23 | 2022-02-08 | 2.5 | 2.48 | — | 2.5 | 0.008 | 0.81 | 0.0 | 0.86 | 15.25 | 0.01 | 1.869 | 4.23 | 0.03 | 3.2 | 96.8 | 0.0 | -0.01 | 0.70 | 0.89 | 5.55 | 2.5 | 0.007 | 1.34 | 0.0 | 0.26 | 16.56 | 0.00 | 2.142 | 5.07 | 0.94 | 2.3 | 97.7 | 0.0 | 1.33 | 0.79 | 0.70 | 0.90 | 4.69 | 65153 | 7802 | 111 | 0 | 47 | 851 | 0 | logfile |
✔ | 7R41 | 14251 | 2023-04-26 | 2022-02-08 | 2.3 | 2.35 | — | 2.4 | 0.008 | 0.85 | 0.0 | 0.84 | 16.91 | 0.00 | 1.904 | 3.40 | 1.01 | 2.4 | 97.5 | 0.0 | 0.57 | 0.71 | 0.90 | 5.72 | 2.4 | 0.007 | 1.31 | 0.0 | 0.25 | 16.89 | 0.00 | 1.989 | 4.52 | 1.04 | 1.8 | 98.2 | 0.0 | 1.62 | 0.79 | 0.71 | 0.91 | 5.22 | 69138 | 8194 | 111 | 0 | 57 | 1307 | 0 | logfile |
✔ | 7QSL | 14133 | 2023-04-26 | 2022-01-13 | 2.76 | 2.80 | 2.81 | 2.7 | 0.010 | 0.96 | 0.0 | 0.84 | 14.23 | 0.00 | 1.561 | 3.91 | 0.06 | 3.1 | 96.8 | 0.0 | -0.57 | 0.78 | 0.89 | 5.14 | 2.7 | 0.007 | 1.30 | 0.0 | 0.25 | 15.89 | 0.00 | 1.483 | 5.63 | 0.77 | 2.1 | 97.9 | 0.0 | 1.47 | 0.87 | 0.78 | 0.90 | 4.18 | 69734 | 8287 | 109 | 0 | 56 | 1024 | 0 | logfile |
✔ | 7R43 | 14261 | 2023-04-25 | 2022-02-08 | 2.4 | 2.41 | — | 2.5 | 0.007 | 0.79 | 0.0 | 0.84 | 15.03 | 0.00 | 1.899 | 3.40 | 0.01 | 2.5 | 97.4 | 0.0 | 0.39 | 0.69 | 0.89 | 5.73 | 2.4 | 0.007 | 1.30 | 0.0 | 0.25 | 16.38 | 0.00 | 1.204 | 4.60 | 0.56 | 1.6 | 98.4 | 0.0 | 1.60 | 0.31 | 0.69 | 0.90 | 4.85 | 68334 | 8188 | 109 | 0 | 47 | 885 | 0 | logfile |
✔ | 6WKV | 21810 | 2023-04-26 | 2020-04-17 | 2.99 | 2.74 | — | 2.9 | 0.012 | 0.66 | 0.0 | 0.06 | 16.80 | 0.00 | 2.116 | 10.99 | 3.10 | 6.7 | 93.3 | 0.0 | -4.68 | 0.81 | 0.85 | 3.88 | 2.9 | 0.004 | 0.61 | 0.0 | 0.04 | 18.38 | 0.00 | 2.132 | 4.53 | 1.55 | 3.0 | 97.0 | 0.0 | -0.48 | 1.16 | 0.82 | 0.87 | 3.03 | 126600 | 15420 | 108 | 0 | 60 | 0 | 0 | logfile |
✘ | 7D1T | 30547 | 2023-04-19 | 2020-09-15 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52994 | 5312 | 108 | 0 | 196 | 2432 | 0 | logfile |
✘ | 5GUP | 9539 | 2023-04-21 | 2016-08-30 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109982 | 13895 | 107 | 0 | 77 | 0 | 0 | logfile |
✔ | 7PWG | 13681 | 2023-04-20 | 2021-10-06 | 2.75 | 2.35 | — | 2.5 | 0.010 | 1.07 | 0.0 | 0.06 | 16.06 | 0.02 | 1.376 | 3.78 | 6.08 | 4.4 | 95.6 | 0.0 | -2.19 | 0.76 | 0.88 | 4.64 | 2.5 | 0.007 | 0.93 | 0.0 | 0.05 | 16.61 | 0.01 | 1.664 | 4.15 | 3.60 | 3.8 | 96.2 | 0.0 | -0.54 | 0.30 | 0.77 | 0.88 | 4.03 | 109151 | 5769 | 105 | 2722 | 294 | 4397 | 0 | logfile |
✔ | 7BGL | 12183 | 2023-04-26 | 2021-01-07 | 2.2 | 2.57 | 2.32 | 2.5 | 0.007 | 0.70 | 0.0 | 0.08 | 19.34 | 0.00 | 1.980 | 30.00 | 2.50 | 7.3 | 92.7 | 0.0 | 0.56 | 0.73 | 0.87 | 3.07 | 2.5 | 0.002 | 0.59 | 0.0 | 0.04 | 17.17 | 0.00 | 2.143 | 8.93 | 3.27 | 7.1 | 92.9 | 0.0 | -0.12 | 0.94 | 0.74 | 0.90 | 3.06 | 120484 | 15626 | 104 | 0 | 52 | 0 | 0 | logfile |
✘ | 7oY8 | 13110 | 2023-04-26 | 2021-06-23 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22902 | 2293 | 103 | 0 | 68 | 372 | 0 | logfile |
✘ | 7DGR | 30674 | 2023-04-19 | 2020-11-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 107305 | 13811 | 102 | 0 | 37 | 0 | 0 | logfile |
✔ | 7XM1 | 33289 | 2023-04-21 | 2022-04-24 | 3.96 | 3.41 | 3.91 | 4.0 | 0.002 | 0.43 | 0.0 | 0.04 | 15.16 | 0.00 | 2.503 | 2.22 | 0.00 | 3.3 | 96.7 | 0.0 | 2.33 | 0.73 | 0.81 | 1.85 | 3.9 | 0.003 | 0.56 | 0.0 | 0.04 | 18.87 | 0.00 | 2.214 | 4.30 | 0.31 | 3.3 | 96.7 | 0.0 | 2.60 | 0.65 | 0.74 | 0.83 | 1.49 | 60240 | 7380 | 101 | 0 | 60 | 0 | 0 | logfile |
✘ | 6TRC | 10558 | 2023-04-28 | 2019-12-18 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75591 | 6849 | 99 | 0 | 402 | 651 | 0 | logfile |
✔ | 6J3Z | 9776 | 2023-04-28 | 2019-01-07 | 3.6 | 3.78 | — | 3.6 | 0.019 | 1.82 | 4.0 | 0.15 | 17.99 | 0.01 | 1.392 | 13.61 | 0.28 | 4.3 | 95.7 | 0.0 | -5.08 | 0.80 | 0.81 | 3.43 | 3.6 | 0.004 | 0.71 | 0.0 | 0.04 | 17.15 | 0.00 | 1.596 | 14.19 | 0.59 | 3.4 | 96.6 | 0.0 | -0.05 | 0.75 | 0.80 | 0.82 | 2.53 | 74619 | 6984 | 97 | 0 | 978 | 0 | 0 | logfile |
✘ | 7FiX | 31605 | 2023-04-27 | 2021-08-01 | 1.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 73929 | 7137 | 96 | 0 | 444 | 348 | 0 | logfile |
✔ | 6YJ4 | 10815 | 2023-04-23 | 2020-04-02 | 2.7 | 2.35 | 2.73 | 2.6 | 0.011 | 1.10 | 0.0 | 0.65 | 14.88 | 0.01 | 2.031 | 2.88 | 0.03 | 4.1 | 95.8 | 0.0 | -2.17 | 0.58 | 0.79 | 4.22 | 2.6 | 0.005 | 1.02 | 0.0 | 0.18 | 16.77 | 0.00 | 1.387 | 7.10 | 1.40 | 3.4 | 96.6 | 0.0 | 0.78 | 0.57 | 0.63 | 0.84 | 3.70 | 66311 | 8126 | 94 | 0 | 50 | 275 | 0 | logfile |