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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Roi | 24597 | 2023-11-20 | 2021-07-30 | 4.3 | 4.43 | — | 4.1 | 0.004 | 0.66 | 0.0 | 0.05 | 12.41 | 0.01 | 2.400 | 9.73 | 1.33 | 4.3 | 95.7 | 0.0 | 1.63 | 0.67 | 0.85 | — | 4.1 | 0.004 | 0.77 | 0.0 | 0.05 | 11.38 | 0.01 | 2.186 | 11.55 | 0.00 | 4.3 | 95.7 | 0.0 | 2.65 | 0.64 | 0.67 | 0.85 | — | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Ro3 | 24586 | 2023-11-19 | 2021-07-30 | 4.8 | 4.78 | — | 4.4 | 0.004 | 0.65 | 0.0 | 0.05 | 12.47 | 0.01 | 2.358 | 11.99 | 1.33 | 4.3 | 95.7 | 0.0 | 1.70 | 0.67 | 0.84 | — | 4.4 | 0.005 | 1.03 | 0.0 | 0.05 | 11.66 | 0.01 | 2.227 | 24.92 | 0.00 | 6.5 | 93.5 | 0.0 | 0.29 | 2.18 | 0.68 | 0.84 | — | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✘ | 5VLZ | 8709 | 2023-11-21 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JAU | 6366 | 2023-11-15 | 2015-06-24 | 4.8 | 4.76 | — | 6.0 | 0.027 | 2.66 | 660.0 | 0.16 | 14.74 | 0.02 | 1.686 | 10.72 | 1.90 | 4.6 | 94.1 | 1.3 | -2.16 | 0.21 | 0.38 | — | 5.4 | 0.003 | 0.70 | 0.0 | 0.04 | 13.62 | 0.00 | 2.034 | 12.63 | 0.00 | 4.6 | 95.0 | 0.4 | -1.07 | 1.45 | 0.24 | 0.57 | — | 114900 | 14700 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CKB | 30384 | 2023-11-15 | 2020-07-16 | 3.24 | 3.29 | — | 3.2 | 0.008 | 0.88 | 0.0 | 0.05 | 16.33 | 0.01 | 2.160 | 6.96 | 1.05 | 4.0 | 96.0 | 0.0 | -0.87 | 0.85 | 0.88 | 2.17 | 3.2 | 0.006 | 0.72 | 0.0 | 0.05 | 17.10 | 0.00 | 2.145 | 7.26 | 1.43 | 2.5 | 97.5 | 0.0 | -0.14 | 0.28 | 0.85 | 0.90 | 2.74 | 114840 | 15840 | 180 | 0 | 0 | 0 | 0 | logfile |
✘ | 7UJL | 26566 | 2023-11-20 | 2022-03-31 | 3.3 | 3.53 | 3.27 | 3.4 | 0.015 | 2.11 | 120.0 | 0.14 | 20.03 | 0.02 | 1.760 | 6.20 | 0.00 | 5.1 | 94.9 | 0.0 | -1.45 | 0.58 | 0.70 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 86820 | 9660 | 180 | 480 | 0 | 0 | 0 | logfile |
✔ | 6RRS | 4989 | 2023-11-21 | 2019-05-20 | 3.9 | 4.30 | 4.41 | 3.8 | 0.013 | 2.10 | 0.0 | 0.00 | 2.04 | 0.01 | 2.364 | 0.79 | 0.00 | 3.9 | 95.3 | 0.8 | -0.85 | 0.56 | 0.64 | — | 3.8 | 0.004 | 0.84 | 0.0 | 0.00 | 7.15 | 0.00 | 2.195 | 1.79 | 0.00 | 15.0 | 85.0 | 0.0 | -1.14 | 2.03 | 0.80 | 0.71 | — | 93060 | 23220 | 180 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BD3 | 15973 | 2023-11-16 | 2022-10-18 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 117990 | 10804 | 166 | 0 | 722 | 224 | 0 | logfile |
✔ | 7VEA | 31944 | 2023-11-14 | 2021-09-08 | 3.7 | 3.55 | — | 3.5 | 0.009 | 1.13 | 0.0 | 0.04 | 13.48 | 0.00 | 2.098 | 6.48 | 0.58 | 1.5 | 98.4 | 0.0 | 2.51 | 0.65 | 0.78 | 1.44 | 3.5 | 0.004 | 0.77 | 0.0 | 0.04 | 16.55 | 0.00 | 2.063 | 15.67 | 0.57 | 2.2 | 97.7 | 0.0 | 2.25 | 1.43 | 0.69 | 0.77 | 1.04 | 111542 | 15594 | 165 | 0 | 84 | 0 | 0 | logfile |
✔ | 7SC9 | 25030 | 2023-11-16 | 2021-09-27 | 2.6 | 3.71 | 2.70 | 3.0 | 0.005 | 0.63 | 0.0 | 0.04 | 13.52 | 0.01 | 2.039 | 38.58 | 0.01 | 2.7 | 97.2 | 0.0 | 2.39 | 0.80 | 0.82 | 1.56 | 3.0 | 0.004 | 0.81 | 0.0 | 0.04 | 16.15 | 0.00 | 2.009 | 19.29 | 1.89 | 2.8 | 97.1 | 0.1 | 1.36 | 0.60 | 0.80 | 0.84 | 1.23 | 117262 | 14948 | 164 | 0 | 76 | 0 | 0 | logfile |
✔ | 7SC7 | 25028 | 2023-11-13 | 2021-09-27 | 2.8 | 3.66 | — | 3.3 | 0.007 | 1.08 | 1.0 | 0.06 | 14.67 | 0.01 | 2.240 | 6.50 | 1.49 | 2.4 | 97.6 | 0.0 | -1.25 | 0.73 | 0.87 | 1.85 | 3.2 | 0.005 | 0.99 | 1.0 | 0.05 | 16.95 | 0.01 | 1.998 | 23.67 | 2.66 | 3.2 | 96.8 | 0.0 | 0.75 | 0.70 | 0.72 | 0.88 | 1.52 | 107930 | 13756 | 156 | 0 | 72 | 0 | 0 | logfile |
✔ | 6WL7 | 21816 | 2023-11-21 | 2020-04-18 | 3.8 | 4.18 | — | 3.9 | 0.006 | 0.58 | 0.0 | 0.04 | 14.93 | 0.00 | 2.204 | 8.50 | 0.00 | 1.2 | 98.8 | 0.0 | 3.28 | 0.79 | 0.87 | 2.36 | 3.9 | 0.005 | 0.97 | 0.0 | 0.04 | 17.47 | 0.00 | 2.173 | 14.78 | 2.10 | 0.0 | 100.0 | 0.0 | 4.93 | 1.01 | 0.79 | 0.86 | 1.94 | 34350 | 4350 | 150 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQH | 23486 | 2023-11-15 | 2021-02-13 | 3.4 | 3.12 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.098 | 31.15 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.59 | 0.80 | 5.83 | 3.2 | 0.111 | 4.25 | 190.0 | 0.31 | 24.04 | 0.02 | 1.610 | 112.99 | 4.28 | 40.1 | 59.5 | 0.3 | -8.01 | 3.50 | 0.66 | 0.87 | 3.32 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQG | 23485 | 2023-11-15 | 2021-02-13 | 3.4 | 3.13 | — | 3.3 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 1.842 | 31.02 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.61 | 0.81 | 5.57 | 3.1 | 0.110 | 4.37 | 186.0 | 0.30 | 23.67 | 0.02 | 1.819 | 120.04 | 3.70 | 35.6 | 64.4 | 0.0 | -8.04 | 1.65 | 0.66 | 0.86 | 3.86 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✘ | 5XNL | 6741 | 2023-11-22 | 2017-05-23 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98986 | 9364 | 136 | 0 | 490 | 1076 | 0 | logfile |
✘ | 7Pi0 | 13429 | 2023-11-19 | 2021-08-19 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 77465 | 7442 | 133 | 0 | 354 | 1724 | 0 | logfile |
✘ | 6KAC | 9955 | 2023-11-19 | 2019-06-21 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 77947 | 7858 | 126 | 0 | 318 | 595 | 0 | logfile |
✘ | 7UMH | 26601 | 2023-11-21 | 2022-04-07 | 2.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 140516 | 12747 | 124 | 0 | 798 | 461 | 0 | logfile |
✘ | 7Pi5 | 13430 | 2023-11-19 | 2021-08-19 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76287 | 7455 | 123 | 0 | 343 | 718 | 0 | logfile |
✘ | 6TGY | 10501 | 2023-11-21 | 2019-11-18 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.42 | — | — | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 96960 | 12480 | 120 | 0 | 0 | 0 | 0 | logfile |