Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TGY	10501	2022-12-17	2019-11-18	3.5	3.59	3.49	3.5	0.007	1.10	0.0	0.05	10.46	0.01	2.359	1.88	0.00	16.6	83.4	0.0	-5.42	0.69	0.73	3.89	3.5	0.006	0.67	0.0	0.04	14.80	0.01	2.126	6.92	0.59	13.9	86.1	0.0	-1.15	0.75	0.76	0.83	2.91	96960	12480	120	0	0	0	0	logfile
✔	7XXF	33501	2022-12-16	2022-05-30	2.24	2.16	2.23	2.2	0.023	2.96	0.0	0.05	21.47	0.02	2.014	7.37	1.31	2.8	97.2	0.0	1.59	0.77	0.88	5.31	2.2	0.003	1.45	0.0	0.04	17.62	0.00	2.003	7.41	1.06	2.7	97.3	0.0	2.34	0.38	0.77	0.90	4.45	29826	3004	120	0	98	538	0	logfile
✔	6J40	9777	2022-12-17	2019-01-07	3.8	4.30	—	3.8	0.022	1.96	4.0	0.18	19.08	0.01	1.376	17.83	0.33	4.5	95.5	0.0	-5.08	0.80	0.72	1.93	3.8	0.004	0.76	0.0	0.04	16.55	0.00	1.476	18.04	0.25	4.5	95.5	0.0	-0.13	0.71	0.84	0.78	1.59	96390	8392	120	0	1656	0	0	logfile
✔	7QSM	14134	2022-12-14	2022-01-13	2.3	2.31	—	2.3	0.007	0.92	0.0	0.85	15.66	0.00	1.860	3.77	0.58	2.3	97.6	0.0	0.75	0.76	0.90	6.42	2.3	0.007	1.29	0.0	0.26	16.10	0.00	1.922	5.70	0.79	1.7	98.3	0.0	1.78	0.81	0.77	0.91	5.66	71639	8262	118	0	62	2774	0	logfile
✔	7QSK	14132	2022-12-14	2022-01-13	2.84	2.93	2.90	2.8	0.008	0.91	0.0	0.84	15.03	0.00	1.896	4.27	0.15	3.1	96.9	0.1	0.26	0.77	0.87	4.81	2.9	0.007	1.30	0.0	0.25	16.17	0.00	2.002	7.15	0.93	2.0	98.0	0.0	1.75	0.50	0.78	0.89	3.93	69986	8291	116	0	59	1060	0	logfile
✔	7ARD	11880	2022-12-14	2020-10-23	3.11	3.05	—	3.0	0.005	0.90	0.0	0.05	14.05	0.01	1.852	13.15	0.04	2.1	97.9	0.0	0.94	0.78	0.86	3.25	3.0	0.002	0.51	0.0	0.04	15.82	0.00	2.072	8.27	0.22	2.3	97.7	0.0	1.34	0.98	0.78	0.89	2.91	70559	8515	116	0	264	782	0	logfile
✔	7QSN	14139	2022-12-14	2022-01-13	2.81	2.74	2.82	2.7	0.008	0.92	0.0	0.85	15.14	0.00	1.853	4.76	0.01	3.3	96.7	0.0	-0.45	0.77	0.87	4.68	2.7	0.007	1.31	0.0	0.25	16.33	0.00	2.035	7.33	1.12	2.2	97.8	0.0	1.37	1.17	0.77	0.88	3.98	69319	8201	116	0	59	1096	0	logfile
✔	7SCA	25031	2022-12-11	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.53	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.54	0.0	0.04	16.62	0.00	2.126	8.47	0.98	0.9	99.1	0.0	2.90	1.09	0.79	0.85	5.23	55437	6836	116	0	54	1325	0	logfile
✔	7SC8	25029	2022-12-12	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.31	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.005	0.58	0.0	0.04	16.44	0.00	2.142	8.47	0.98	1.2	98.8	0.0	2.80	0.36	0.86	0.87	4.18	56784	6836	116	0	54	2672	0	logfile
✔	7RCV	24407	2022-12-11	2021-07-08	2.01	1.78	—	1.9	0.024	2.35	0.0	0.13	20.29	0.01	1.915	14.12	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.006	0.91	0.0	0.05	19.05	0.01	2.010	12.97	2.06	2.8	97.1	0.0	0.50	0.91	0.81	0.84	5.43	54656	5544	114	0	228	1236	0	logfile
✔	7N8o	24239	2022-12-11	2021-06-15	1.93	1.73	—	1.9	0.024	2.36	0.0	0.13	20.20	0.01	1.522	14.96	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.004	0.76	0.0	0.05	18.62	0.01	2.011	12.03	1.57	2.8	97.2	0.0	1.10	0.35	0.75	0.77	5.40	54656	5544	113	0	228	1236	0	logfile
✔	7QSL	14133	2022-12-14	2022-01-13	2.76	2.80	2.81	2.7	0.010	0.96	0.0	0.84	14.06	0.00	1.710	4.91	0.06	3.1	96.8	0.0	-0.57	0.78	0.89	5.14	2.7	0.007	1.30	0.0	0.25	15.74	0.00	1.521	6.90	0.91	2.0	97.9	0.0	1.52	0.87	0.78	0.90	4.16	69733	8287	109	0	56	1024	0	logfile
✘	7oUi	13078	2022-12-19	2021-06-11	2.79	3.20	—	3.1	0.017	1.97	0.0	0.06	17.68	0.04	1.216	52.17	1.81	5.1	94.7	0.2	0.45	0.63	0.78	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	84427	8342	108	0	374	139	0	logfile
✘	7D1T	30547	2022-12-19	2020-09-15	1.95	1.88	1.89	1.9	0.020	1.91	31.0	0.10	18.53	0.02	1.200	3.45	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✔	6WL8	21817	2022-12-15	2020-04-18	4.1	4.58	—	4.3	0.005	0.65	0.0	0.05	15.48	0.00	2.395	2.78	0.00	0.0	100.0	0.0	-1.08	0.73	0.86	—	4.2	0.004	0.76	0.0	0.04	14.63	0.00	2.281	14.04	0.00	0.5	99.5	0.0	3.46	2.62	0.74	0.87	—	23850	3074	106	0	0	0	0	logfile
✘	7D1U	30548	2022-12-22	2020-09-15	2.08	1.94	2.04	2.0	0.018	1.83	27.0	0.10	18.50	0.02	1.202	4.10	3.09	2.3	97.5	0.2	-1.36	0.74	0.87	6.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile
✔	6WKX	21812	2022-12-13	2020-04-17	4.2	4.31	—	4.2	0.006	0.59	0.0	0.04	15.11	0.00	2.298	2.52	0.00	0.0	100.0	0.0	-3.67	0.77	0.90	—	4.2	0.004	0.66	0.0	0.04	16.54	0.00	2.187	8.89	0.00	0.0	100.0	0.0	4.22	1.00	0.77	0.89	—	12915	1575	105	0	0	0	0	logfile
✔	6WL9	21818	2022-12-15	2020-04-18	4.2	4.68	—	4.4	0.006	0.53	0.0	0.04	13.18	0.00	2.052	24.33	0.00	1.9	98.1	0.0	1.21	0.74	0.87	—	4.4	0.004	0.88	0.0	0.05	13.49	0.00	2.197	19.25	0.09	0.2	99.8	0.0	2.25	1.51	0.73	0.86	—	23400	3016	104	0	0	0	0	logfile
✘	6KAF	9957	2022-12-19	2019-06-22	3.73	3.95	—	3.7	0.014	1.69	0.0	0.10	16.92	0.01	1.212	7.91	0.62	10.0	90.0	0.1	-3.68	0.78	0.73	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	104363	9607	104	0	552	0	0	logfile
✘	7oY8	13110	2022-12-18	2021-06-23	2.5	2.51	—	2.6	0.008	0.95	0.0	0.05	15.57	0.01	1.197	0.88	0.21	2.4	97.6	0.0	0.49	0.72	0.78	2.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22902	2293	103	0	68	372	0	logfile

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