Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oZG	13123	2022-11-29	2021-06-28	3.3	3.21	2.71	3.6	0.023	1.83	0.0	0.10	12.75	0.01	2.254	17.09	0.00	8.7	91.3	0.0	-4.01	0.40	0.73	3.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4960	730	10	0	0	0	0	logfile
✔	6RT0	4994	2022-11-29	2019-05-22	3.1	3.18	—	3.1	0.006	0.97	0.0	0.06	14.23	0.00	2.415	2.11	1.06	11.5	88.5	0.0	-3.76	0.71	0.84	6.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4925	735	10	0	0	0	0	logfile
✔	6CU8	7619	2022-11-29	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.42	0.73	2.58	2880	410	10	0	0	0	0	logfile
✔	6K32	9907	2022-11-29	2019-05-16	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	61364	7723	10	8	6	0	0	logfile
✔	6SSX	10307	2022-11-29	2019-09-09	2.98	3.11	—	3.1	0.008	0.94	0.0	0.07	14.94	0.00	2.424	6.14	4.26	12.6	87.4	0.0	-4.73	0.65	0.82	4.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4900	730	10	0	0	0	0	logfile
✔	7M61	23686	2022-11-29	2021-03-25	3.8	3.83	—	4.1	0.005	1.01	0.0	0.08	12.79	0.00	2.218	23.57	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.004	0.78	0.0	0.05	14.97	0.00	2.122	21.71	1.03	14.8	85.2	0.0	-4.62	0.86	0.47	0.75	2.83	1690	230	10	0	10	0	0	logfile
✔	6CU7	7618	2022-11-29	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.3	0.004	0.67	0.0	0.05	14.08	0.00	2.215	17.37	0.71	13.1	86.9	0.0	-4.59	1.76	0.38	0.72	1.68	4140	600	10	0	0	0	0	logfile
✔	7oZH	13124	2022-11-29	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.3	0.005	0.74	0.0	0.05	14.80	0.00	2.352	19.62	0.77	10.2	89.8	0.0	-2.61	2.54	0.40	0.70	1.11	3890	580	10	0	0	0	0	logfile
✔	6Y5L	10701	2022-11-29	2020-02-25	3.6	3.66	2.91	3.6	0.003	0.69	0.0	0.05	14.52	0.01	2.161	6.30	0.00	7.8	92.2	0.0	-2.14	0.67	0.72	1.57	3.6	0.004	1.04	0.0	0.05	18.54	0.01	2.257	20.21	0.00	3.9	96.1	0.0	-0.04	1.09	0.69	0.74	0.99	3855	477	9	0	3	0	0	logfile
✔	7NPS	12518	2022-11-29	2021-02-28	3.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55350	3732	9	0	0	0	27681	logfile
✔	6VPS	21316	2022-11-29	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.004	0.53	0.0	0.03	20.06	0.00	2.403	4.27	0.98	6.9	93.1	0.0	-3.78	1.19	0.48	0.88	6.47	2736	279	9	0	0	0	0	logfile
✔	7QKZ	14058	2022-11-29	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.50	0.0	0.38	19.57	0.01	2.238	12.41	0.00	1.2	98.8	0.0	-0.68	5.09	0.34	0.64	6.83	1701	99	9	0	0	0	891	logfile
✔	7QBi	13887	2022-11-29	2021-11-19	3.46	3.72	3.49	3.7	0.008	1.05	0.0	0.05	14.63	0.01	2.231	3.40	0.00	2.8	97.2	0.0	-1.45	0.59	0.76	2.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4996	622	8	0	16	0	0	logfile
✔	7L7H	23212	2022-11-29	2020-12-28	4.0	2.39	—	4.0	0.008	1.47	0.0	0.08	15.10	0.01	2.199	13.87	3.53	36.3	63.7	0.0	-6.00	0.47	0.60	—	4.0	0.005	0.99	0.0	0.06	16.55	0.00	2.113	18.49	1.96	32.1	67.9	0.0	-4.69	0.91	0.51	0.65	—	2430	352	8	0	0	0	0	logfile
✔	7QTQ	14145	2022-11-29	2022-01-15	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55234	3577	8	0	24	0	27101	logfile
✔	7P5M	13201	2022-11-29	2021-07-14	3.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6204	788	8	0	12	0	0	logfile
✔	7KJR	22898	2022-11-29	2020-10-26	2.08	2.52	2.15	2.4	0.006	0.84	0.0	0.05	16.31	0.00	2.254	8.14	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	16.17	0.00	2.108	10.44	0.74	2.3	97.7	0.0	1.38	0.39	0.63	0.85	4.62	3840	448	8	0	2	122	0	logfile
✔	6PCR	20305	2022-11-29	2019-06-18	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72166	967	8	3015	1	0	0	logfile
✔	7UAQ	26430	2022-11-29	2022-03-13	3.1	3.91	2.90	3.7	0.006	1.16	2.0	0.07	12.64	0.01	2.101	25.20	0.22	11.5	88.5	0.0	-2.56	0.57	0.74	2.32	3.7	0.005	0.84	0.0	0.05	14.98	0.00	2.126	20.16	1.08	10.3	89.7	0.0	-2.17	1.27	0.58	0.79	2.01	4362	533	8	0	10	0	0	logfile
✔	6R4R	4727	2022-11-29	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.005	0.82	0.0	0.05	16.51	0.00	2.111	15.74	2.27	9.1	90.9	0.0	-4.78	3.89	0.31	0.67	3.65	4312	539	7	0	0	0	0	logfile

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