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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7R43 | 14261 | 2023-07-09 | 2022-02-08 | 2.4 | 2.41 | — | 2.5 | 0.007 | 0.79 | 0.0 | 0.84 | 15.03 | 0.00 | 1.899 | 3.40 | 0.01 | 2.5 | 97.4 | 0.0 | 0.39 | 0.69 | 0.89 | 5.73 | 2.4 | 0.007 | 1.30 | 0.0 | 0.25 | 16.38 | 0.00 | 1.204 | 4.60 | 0.56 | 1.6 | 98.4 | 0.0 | 1.60 | 0.31 | 0.69 | 0.90 | 4.85 | 68334 | 8188 | 109 | 0 | 47 | 885 | 0 | logfile |
✔ | 6WKV | 21810 | 2023-07-10 | 2020-04-17 | 2.99 | 2.74 | — | 2.9 | 0.012 | 0.66 | 0.0 | 0.06 | 16.80 | 0.00 | 2.116 | 10.99 | 3.10 | 6.7 | 93.3 | 0.0 | -4.68 | 0.81 | 0.85 | 3.88 | 2.9 | 0.004 | 0.61 | 0.0 | 0.04 | 18.38 | 0.00 | 2.132 | 4.53 | 1.55 | 3.0 | 97.0 | 0.0 | -0.48 | 1.16 | 0.82 | 0.87 | 3.03 | 126600 | 15420 | 108 | 0 | 60 | 0 | 0 | logfile |
✘ | 7D1T | 30547 | 2023-07-03 | 2020-09-15 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52994 | 5312 | 108 | 0 | 196 | 2432 | 0 | logfile |
✘ | 7oUi | 13078 | 2023-07-14 | 2021-06-11 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 84427 | 8342 | 108 | 0 | 374 | 139 | 0 | logfile |
✘ | 5GUP | 9539 | 2023-07-04 | 2016-08-30 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109982 | 13895 | 107 | 0 | 77 | 0 | 0 | logfile |
✘ | 7D1U | 30548 | 2023-07-20 | 2020-09-15 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52655 | 5312 | 106 | 0 | 196 | 2121 | 0 | logfile |
✔ | 7PWG | 13681 | 2023-07-04 | 2021-10-06 | 2.75 | 2.35 | — | 2.5 | 0.010 | 1.07 | 0.0 | 0.06 | 16.06 | 0.02 | 1.376 | 3.78 | 6.08 | 4.4 | 95.6 | 0.0 | -2.19 | 0.76 | 0.88 | 4.64 | 2.5 | 0.007 | 0.93 | 0.0 | 0.05 | 16.61 | 0.01 | 1.664 | 4.15 | 3.60 | 3.8 | 96.2 | 0.0 | -0.54 | 0.30 | 0.77 | 0.88 | 4.03 | 109151 | 5769 | 105 | 2722 | 294 | 4397 | 0 | logfile |
✘ | 6KAF | 9957 | 2023-07-19 | 2019-06-22 | 3.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 104363 | 9607 | 104 | 0 | 552 | 0 | 0 | logfile |
✔ | 7BGL | 12183 | 2023-07-10 | 2021-01-07 | 2.2 | 2.57 | 2.32 | 2.5 | 0.007 | 0.70 | 0.0 | 0.08 | 19.34 | 0.00 | 1.980 | 30.00 | 2.50 | 7.3 | 92.7 | 0.0 | 0.56 | 0.73 | 0.87 | 3.07 | 2.5 | 0.002 | 0.59 | 0.0 | 0.04 | 17.17 | 0.00 | 2.143 | 8.93 | 3.27 | 7.1 | 92.9 | 0.0 | -0.12 | 0.94 | 0.74 | 0.90 | 3.06 | 120484 | 15626 | 104 | 0 | 52 | 0 | 0 | logfile |
✘ | 7oY8 | 13110 | 2023-07-11 | 2021-06-23 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22902 | 2293 | 103 | 0 | 68 | 372 | 0 | logfile |
✔ | 8AKN | 15488 | 2023-07-21 | 2022-07-30 | 2.3 | 1.94 | 2.20 | 2.2 | 0.013 | 1.78 | 0.0 | 0.17 | 14.48 | 0.02 | 1.528 | 3.25 | 2.19 | 5.9 | 93.2 | 0.9 | -3.31 | 0.61 | 0.80 | 5.18 | 2.1 | 0.005 | 0.79 | 0.0 | 0.04 | 15.02 | 0.01 | 1.767 | 7.21 | 2.33 | 2.6 | 97.3 | 0.1 | -0.01 | 1.22 | 0.72 | 0.85 | 4.95 | 146513 | 5960 | 103 | 4552 | 309 | 1754 | 0 | logfile |
✘ | 7DGR | 30674 | 2023-07-03 | 2020-11-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 107305 | 13811 | 102 | 0 | 37 | 0 | 0 | logfile |
✔ | 7XM1 | 33289 | 2023-07-05 | 2022-04-24 | 3.96 | 3.41 | 3.91 | 4.0 | 0.002 | 0.43 | 0.0 | 0.04 | 15.16 | 0.00 | 2.503 | 2.22 | 0.00 | 3.3 | 96.7 | 0.0 | 2.33 | 0.73 | 0.81 | 1.85 | 3.9 | 0.003 | 0.56 | 0.0 | 0.04 | 18.87 | 0.00 | 2.214 | 4.30 | 0.31 | 3.3 | 96.7 | 0.0 | 2.60 | 0.65 | 0.74 | 0.83 | 1.49 | 60240 | 7380 | 101 | 0 | 60 | 0 | 0 | logfile |
✔ | 7VB9 | 31875 | 2023-07-16 | 2021-08-30 | 3.45 | 3.03 | — | 3.3 | 0.019 | 1.97 | 0.0 | 0.04 | 17.13 | 0.05 | 2.077 | 14.17 | 3.01 | 2.8 | 97.2 | 0.0 | 2.33 | 0.62 | 0.77 | 2.94 | 3.3 | 0.004 | 0.72 | 0.0 | 0.04 | 17.15 | 0.00 | 1.743 | 10.91 | 0.25 | 2.4 | 97.6 | 0.0 | 2.13 | 1.79 | 0.65 | 0.82 | 2.64 | 36474 | 3807 | 100 | 0 | 107 | 0 | 0 | logfile |
✘ | 6TRC | 10558 | 2023-07-12 | 2019-12-18 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75591 | 6849 | 99 | 0 | 402 | 651 | 0 | logfile |
✔ | 7o3W | 12710 | 2023-07-14 | 2021-04-03 | 4.9 | 6.81 | 5.80 | 7.1 | 0.017 | 1.84 | 0.0 | 0.11 | 18.08 | 0.01 | 0.360 | 24.19 | 0.30 | 3.5 | 96.4 | 0.2 | 1.74 | 0.66 | 0.54 | — | 7.1 | 0.004 | 0.92 | 0.0 | 0.04 | 15.52 | 0.00 | 1.988 | 27.22 | 0.01 | 1.6 | 98.3 | 0.1 | 1.59 | 2.07 | 0.75 | 0.81 | — | 138390 | 17976 | 98 | 0 | 14 | 0 | 0 | logfile |
✔ | 6J3Z | 9776 | 2023-07-12 | 2019-01-07 | 3.6 | 3.78 | — | 3.6 | 0.019 | 1.82 | 4.0 | 0.15 | 17.99 | 0.01 | 1.392 | 13.61 | 0.28 | 4.3 | 95.7 | 0.0 | -5.08 | 0.80 | 0.81 | 3.43 | 3.6 | 0.004 | 0.71 | 0.0 | 0.04 | 17.15 | 0.00 | 1.596 | 14.19 | 0.59 | 3.4 | 96.6 | 0.0 | -0.05 | 0.75 | 0.80 | 0.82 | 2.53 | 74619 | 6984 | 97 | 0 | 978 | 0 | 0 | logfile |
✘ | 7FiX | 31605 | 2023-07-11 | 2021-08-01 | 1.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 73929 | 7137 | 96 | 0 | 444 | 348 | 0 | logfile |
✘ | 6KAD | 9956 | 2023-07-19 | 2019-06-21 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105342 | 9734 | 94 | 0 | 560 | 0 | 0 | logfile |
✔ | 6YJ4 | 10815 | 2023-07-07 | 2020-04-02 | 2.7 | 2.35 | 2.73 | 2.6 | 0.011 | 1.10 | 0.0 | 0.65 | 14.88 | 0.01 | 2.031 | 2.88 | 0.03 | 4.1 | 95.8 | 0.0 | -2.17 | 0.58 | 0.79 | 4.22 | 2.6 | 0.005 | 1.02 | 0.0 | 0.18 | 16.77 | 0.00 | 1.387 | 7.10 | 1.40 | 3.4 | 96.6 | 0.0 | 0.78 | 0.57 | 0.63 | 0.84 | 3.70 | 66311 | 8126 | 94 | 0 | 50 | 275 | 0 | logfile |