Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R43	14261	2023-07-09	2022-02-08	2.4	2.41	—	2.5	0.007	0.79	0.0	0.84	15.03	0.00	1.899	3.40	0.01	2.5	97.4	0.0	0.39	0.69	0.89	5.73	2.4	0.007	1.30	0.0	0.25	16.38	0.00	1.204	4.60	0.56	1.6	98.4	0.0	1.60	0.31	0.69	0.90	4.85	68334	8188	109	0	47	885	0	logfile
✔	6WKV	21810	2023-07-10	2020-04-17	2.99	2.74	—	2.9	0.012	0.66	0.0	0.06	16.80	0.00	2.116	10.99	3.10	6.7	93.3	0.0	-4.68	0.81	0.85	3.88	2.9	0.004	0.61	0.0	0.04	18.38	0.00	2.132	4.53	1.55	3.0	97.0	0.0	-0.48	1.16	0.82	0.87	3.03	126600	15420	108	0	60	0	0	logfile
✘	7D1T	30547	2023-07-03	2020-09-15	1.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✘	7oUi	13078	2023-07-14	2021-06-11	2.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	84427	8342	108	0	374	139	0	logfile
✘	5GUP	9539	2023-07-04	2016-08-30	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109982	13895	107	0	77	0	0	logfile
✘	7D1U	30548	2023-07-20	2020-09-15	2.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile
✔	7PWG	13681	2023-07-04	2021-10-06	2.75	2.35	—	2.5	0.010	1.07	0.0	0.06	16.06	0.02	1.376	3.78	6.08	4.4	95.6	0.0	-2.19	0.76	0.88	4.64	2.5	0.007	0.93	0.0	0.05	16.61	0.01	1.664	4.15	3.60	3.8	96.2	0.0	-0.54	0.30	0.77	0.88	4.03	109151	5769	105	2722	294	4397	0	logfile
✘	6KAF	9957	2023-07-19	2019-06-22	3.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	104363	9607	104	0	552	0	0	logfile
✔	7BGL	12183	2023-07-10	2021-01-07	2.2	2.57	2.32	2.5	0.007	0.70	0.0	0.08	19.34	0.00	1.980	30.00	2.50	7.3	92.7	0.0	0.56	0.73	0.87	3.07	2.5	0.002	0.59	0.0	0.04	17.17	0.00	2.143	8.93	3.27	7.1	92.9	0.0	-0.12	0.94	0.74	0.90	3.06	120484	15626	104	0	52	0	0	logfile
✘	7oY8	13110	2023-07-11	2021-06-23	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22902	2293	103	0	68	372	0	logfile
✔	8AKN	15488	2023-07-21	2022-07-30	2.3	1.94	2.20	2.2	0.013	1.78	0.0	0.17	14.48	0.02	1.528	3.25	2.19	5.9	93.2	0.9	-3.31	0.61	0.80	5.18	2.1	0.005	0.79	0.0	0.04	15.02	0.01	1.767	7.21	2.33	2.6	97.3	0.1	-0.01	1.22	0.72	0.85	4.95	146513	5960	103	4552	309	1754	0	logfile
✘	7DGR	30674	2023-07-03	2020-11-12	4.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	107305	13811	102	0	37	0	0	logfile
✔	7XM1	33289	2023-07-05	2022-04-24	3.96	3.41	3.91	4.0	0.002	0.43	0.0	0.04	15.16	0.00	2.503	2.22	0.00	3.3	96.7	0.0	2.33	0.73	0.81	1.85	3.9	0.003	0.56	0.0	0.04	18.87	0.00	2.214	4.30	0.31	3.3	96.7	0.0	2.60	0.65	0.74	0.83	1.49	60240	7380	101	0	60	0	0	logfile
✔	7VB9	31875	2023-07-16	2021-08-30	3.45	3.03	—	3.3	0.019	1.97	0.0	0.04	17.13	0.05	2.077	14.17	3.01	2.8	97.2	0.0	2.33	0.62	0.77	2.94	3.3	0.004	0.72	0.0	0.04	17.15	0.00	1.743	10.91	0.25	2.4	97.6	0.0	2.13	1.79	0.65	0.82	2.64	36474	3807	100	0	107	0	0	logfile
✘	6TRC	10558	2023-07-12	2019-12-18	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75591	6849	99	0	402	651	0	logfile
✔	7o3W	12710	2023-07-14	2021-04-03	4.9	6.81	5.80	7.1	0.017	1.84	0.0	0.11	18.08	0.01	0.360	24.19	0.30	3.5	96.4	0.2	1.74	0.66	0.54	—	7.1	0.004	0.92	0.0	0.04	15.52	0.00	1.988	27.22	0.01	1.6	98.3	0.1	1.59	2.07	0.75	0.81	—	138390	17976	98	0	14	0	0	logfile
✔	6J3Z	9776	2023-07-12	2019-01-07	3.6	3.78	—	3.6	0.019	1.82	4.0	0.15	17.99	0.01	1.392	13.61	0.28	4.3	95.7	0.0	-5.08	0.80	0.81	3.43	3.6	0.004	0.71	0.0	0.04	17.15	0.00	1.596	14.19	0.59	3.4	96.6	0.0	-0.05	0.75	0.80	0.82	2.53	74619	6984	97	0	978	0	0	logfile
✘	7FiX	31605	2023-07-11	2021-08-01	1.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	73929	7137	96	0	444	348	0	logfile
✘	6KAD	9956	2023-07-19	2019-06-21	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	105342	9734	94	0	560	0	0	logfile
✔	6YJ4	10815	2023-07-07	2020-04-02	2.7	2.35	2.73	2.6	0.011	1.10	0.0	0.65	14.88	0.01	2.031	2.88	0.03	4.1	95.8	0.0	-2.17	0.58	0.79	4.22	2.6	0.005	1.02	0.0	0.18	16.77	0.00	1.387	7.10	1.40	3.4	96.6	0.0	0.78	0.57	0.63	0.84	3.70	66311	8126	94	0	50	275	0	logfile

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