Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6ZKC	11244	2023-02-26	2020-06-30	3.1	3.23	—	3.2	0.007	1.02	0.0	1.02	11.69	0.01	2.216	5.52	0.10	4.2	95.8	0.0	-3.11	0.66	0.83	3.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67967	8227	71	0	45	0	0	logfile
✔	7V31	31649	2023-02-26	2021-08-10	2.9	2.99	—	3.0	0.007	0.90	11.0	0.05	15.74	0.01	1.681	10.59	0.36	3.4	96.5	0.1	0.59	0.79	0.87	3.49	3.0	0.003	0.57	0.0	0.04	16.83	0.00	2.081	7.16	1.41	3.7	96.3	0.0	0.96	0.37	0.78	0.88	3.06	68204	8269	71	0	47	0	0	logfile
✔	6ZKL	11253	2023-02-26	2020-06-30	3.1	2.15	—	2.2	0.006	1.01	0.0	1.03	11.90	0.01	2.242	5.62	0.07	3.9	96.1	0.0	-2.99	0.56	0.74	3.16	2.1	0.009	1.62	0.0	0.31	16.09	0.01	2.040	14.99	0.31	4.7	95.3	0.0	0.08	0.71	0.56	0.75	2.74	67492	8162	71	0	47	0	0	logfile
✔	6ZKJ	11251	2023-02-26	2020-06-30	3.0	3.10	—	3.0	0.007	0.99	0.0	1.03	11.77	0.01	2.263	5.38	0.07	3.7	96.3	0.0	-2.95	0.73	0.85	4.05	3.0	0.009	1.60	0.0	0.31	16.28	0.00	2.093	12.23	1.78	3.2	96.7	0.0	0.38	1.64	0.73	0.87	3.18	67479	8163	71	0	46	0	0	logfile
✔	7W4F	32303	2023-02-26	2021-11-27	2.7	2.82	—	2.8	0.008	0.82	1.0	0.04	18.28	0.01	2.201	6.62	1.59	3.8	96.2	0.1	0.96	0.79	0.89	3.43	2.8	0.003	0.57	0.0	0.04	17.61	0.00	2.145	6.11	2.22	3.5	96.4	0.1	1.12	0.26	0.78	0.89	3.43	68192	8270	70	0	46	0	0	logfile
✔	7W0H	32242	2023-02-25	2021-11-18	3.4	3.64	—	3.6	0.007	0.77	0.0	0.04	17.97	0.01	2.191	8.69	0.20	4.0	96.0	0.0	1.21	0.82	0.89	2.42	3.6	0.003	0.57	0.0	0.04	17.10	0.00	2.100	8.11	0.27	4.2	95.8	0.0	1.21	0.26	0.82	0.90	2.36	66850	8140	70	0	40	0	0	logfile
✔	6HXX	0297	2023-02-25	2018-10-18	3.4	3.76	3.51	3.7	0.008	1.14	0.0	0.07	12.31	0.01	1.586	8.35	0.28	8.1	91.9	0.0	-3.79	0.53	0.84	2.51	3.7	0.003	0.69	0.0	0.04	16.37	0.00	2.130	13.65	0.28	7.4	92.6	0.0	-0.24	1.27	0.56	0.86	2.11	65765	7840	70	175	0	0	0	logfile
✔	5FUU	3308	2023-02-23	2016-01-29	4.19	4.30	—	4.2	0.013	1.78	3.0	0.11	10.98	0.02	1.862	17.37	1.20	6.2	92.2	1.7	-2.38	0.69	0.72	—	4.2	0.003	0.80	0.0	0.05	12.32	0.00	2.131	13.32	0.10	6.5	93.0	0.5	-1.32	0.96	0.77	0.83	—	20735	2281	70	0	213	0	0	logfile
✔	7V2C	31640	2023-02-27	2021-08-08	2.9	3.03	—	3.2	0.007	0.87	5.0	0.05	15.52	0.01	1.632	10.86	0.39	4.0	95.9	0.1	0.64	0.78	0.87	3.28	3.2	0.003	0.57	0.0	0.04	16.54	0.00	2.136	7.44	1.44	3.8	96.1	0.0	0.92	1.13	0.76	0.88	2.91	68315	8269	70	0	46	0	0	logfile
✔	6ZKi	11250	2023-02-26	2020-06-30	2.8	2.89	—	2.8	0.009	1.05	0.0	1.03	11.89	0.01	2.233	5.20	0.06	3.7	96.2	0.1	-2.73	0.75	0.87	4.58	2.8	0.008	1.58	0.0	0.31	15.96	0.00	2.086	10.69	1.96	3.2	96.8	0.0	0.81	1.20	0.75	0.88	3.58	67479	8163	70	0	46	0	0	logfile
✔	6ZKE	11246	2023-02-26	2020-06-30	2.6	2.73	—	2.6	0.008	1.02	0.0	1.03	11.88	0.01	2.257	4.99	0.07	3.4	96.6	0.0	-2.62	0.77	0.88	4.65	2.6	0.008	1.58	0.0	0.31	15.75	0.00	2.123	10.10	1.42	2.8	97.2	0.0	0.98	1.60	0.78	0.89	3.72	67450	8160	70	0	46	0	0	logfile
✔	6ZKP	11257	2023-02-26	2020-06-30	3.2	3.28	—	3.2	0.010	1.04	0.0	1.02	12.03	0.01	2.241	4.61	0.13	3.8	96.2	0.0	-3.03	0.69	0.88	4.50	3.2	0.009	1.59	0.0	0.31	15.44	0.00	2.088	10.97	0.32	3.6	96.4	0.0	0.64	1.03	0.69	0.89	3.56	67353	8157	70	0	44	0	0	logfile
✔	6X5i	22051	2023-02-18	2020-05-26	4.3	4.27	—	4.0	0.060	2.79	210.0	0.16	29.93	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.011	1.53	210.0	0.13	24.62	0.00	1.571	57.36	0.00	0.0	0.0	0.0	—	3.30	0.69	0.74	—	4480	70	70	0	280	0	0	logfile
✘	7EQD	31258	2023-02-24	2021-05-01	2.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23122	2302	70	0	92	0	0	logfile
✔	7W2U	32266	2023-02-26	2021-11-24	2.6	2.72	—	2.7	0.008	0.81	2.0	0.04	17.93	0.01	2.156	6.51	1.04	3.1	96.8	0.1	1.10	0.79	0.89	3.99	2.7	0.002	0.53	0.0	0.04	17.22	0.00	2.118	6.71	1.39	3.0	96.9	0.1	1.43	0.22	0.77	0.88	3.75	68170	8270	69	0	45	0	0	logfile
✔	7Z3A	14474	2023-02-24	2022-03-02	3.95	4.30	—	4.1	0.024	1.87	0.0	0.15	10.13	0.01	1.982	1.57	0.41	2.7	97.3	0.0	0.25	0.80	0.79	1.88	4.1	0.005	0.79	0.0	0.05	14.04	0.00	2.043	13.94	0.62	6.4	93.6	0.0	-0.59	1.50	0.81	0.83	1.43	24000	2793	69	0	156	0	0	logfile
✔	7QSD	14127	2023-02-26	2022-01-13	3.1	2.99	3.12	3.0	0.008	0.79	0.0	0.84	15.69	0.00	1.431	5.77	0.03	5.7	94.2	0.1	-1.37	0.66	0.85	4.09	3.0	0.007	1.33	0.0	0.25	16.63	0.00	1.514	7.51	0.25	2.8	97.2	0.0	0.97	1.15	0.66	0.86	3.14	67259	8207	69	0	40	0	0	logfile
✘	7VZW	32231	2023-02-26	2021-11-16	3.2	3.44	—	3.4	0.007	0.79	0.0	0.04	17.51	0.01	2.197	7.35	0.27	3.8	96.1	0.0	1.17	0.79	0.89	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	68165	8269	69	0	44	0	0	logfile
✔	6ZTQ	11424	2023-02-25	2020-07-20	3.0	3.11	3.15	3.1	0.011	1.08	0.0	1.03	15.83	0.01	1.445	5.35	0.07	7.9	92.1	0.0	-3.27	0.66	0.83	3.75	3.1	0.008	1.61	0.0	0.31	17.69	0.00	1.973	10.60	2.09	5.3	94.7	0.0	0.13	1.24	0.66	0.86	2.93	67073	8182	69	0	35	0	0	logfile
✔	7W2R	32265	2023-02-26	2021-11-24	2.9	2.99	—	3.0	0.008	0.81	2.0	0.04	17.99	0.01	2.197	7.68	1.27	3.1	96.8	0.1	1.08	0.79	0.88	3.55	3.0	0.003	0.53	0.0	0.04	17.28	0.00	2.164	7.37	1.88	3.3	96.7	0.0	1.38	0.25	0.78	0.88	3.46	68128	8270	69	0	45	0	0	logfile

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