Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LQi	23487	2023-08-10	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.84	5.0	0.14	22.95	0.01	1.918	120.77	3.33	46.5	53.5	0.0	-7.05	1.54	0.65	0.83	2.52	8400	800	100	0	0	0	0	logfile
✔	7VB9	31875	2023-08-23	2021-08-30	3.45	3.03	—	3.3	0.019	1.97	0.0	0.04	17.13	0.05	2.077	14.17	3.01	2.8	97.2	0.0	2.33	0.62	0.77	2.94	3.3	0.004	0.72	0.0	0.04	17.15	0.00	1.743	10.91	0.25	2.4	97.6	0.0	2.13	1.79	0.65	0.82	2.64	36474	3807	100	0	107	0	0	logfile
✘	6TRC	10558	2023-08-18	2019-12-18	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75591	6849	99	0	402	651	0	logfile
✔	7Q2Q	13780	2023-08-12	2021-10-26	4.3	3.37	—	3.6	0.010	1.40	0.0	0.08	11.79	0.01	1.166	18.08	0.00	8.5	90.7	0.8	-4.23	0.58	0.71	—	3.3	0.005	0.75	0.0	0.04	14.75	0.01	2.066	14.62	0.15	5.0	95.0	0.0	-1.77	1.52	0.60	0.75	—	62377	7497	98	147	0	0	0	logfile
✘	2XEA	1730	2023-08-12	2010-05-12	4.6	4.10	—	4.2	0.012	2.12	0.0	0.12	20.46	0.02	1.226	2.63	3.68	8.6	90.1	1.3	-3.51	0.39	0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62671	7546	98	147	0	0	0	logfile
✔	3J06	5185	2023-08-12	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.08	0.01	1.607	79.64	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.2	0.003	0.88	0.0	0.04	20.32	0.01	2.209	17.76	0.98	6.9	91.2	1.8	-3.04	1.28	0.55	0.78	2.20	62916	7595	98	147	0	0	0	logfile
✔	7UUQ	26800	2023-08-09	2022-04-28	3.1	3.45	2.98	3.3	0.014	2.95	0.0	0.06	20.39	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.118	4.71	11.0	0.23	25.10	0.02	1.642	53.03	1.10	65.5	31.5	3.0	-10.63	0.67	0.73	0.90	3.96	4760	364	98	0	98	0	0	logfile
✔	7Q2S	13782	2023-08-12	2021-10-26	3.7	3.23	—	3.3	0.010	1.40	0.0	0.08	11.79	0.01	1.217	18.46	0.00	8.6	90.7	0.7	-4.24	0.45	0.63	1.80	3.2	0.004	0.86	0.0	0.04	18.00	0.00	1.961	19.66	0.92	6.9	93.1	0.0	-3.02	1.12	0.52	0.69	1.92	62377	7497	98	147	0	0	0	logfile
✔	7o3W	12710	2023-08-22	2021-04-03	4.9	6.81	5.80	7.1	0.017	1.84	0.0	0.11	18.08	0.01	0.360	24.19	0.30	3.5	96.4	0.2	1.74	0.66	0.54	—	7.1	0.004	0.92	0.0	0.04	15.52	0.00	1.988	27.22	0.01	1.6	98.3	0.1	1.59	2.07	0.75	0.81	—	138390	17976	98	0	14	0	0	logfile
✔	6J3Z	9776	2023-08-18	2019-01-07	3.6	3.78	—	3.6	0.019	1.82	4.0	0.15	17.99	0.01	1.392	13.61	0.28	4.3	95.7	0.0	-5.08	0.80	0.81	3.43	3.6	0.004	0.71	0.0	0.04	17.15	0.00	1.596	14.19	0.59	3.4	96.6	0.0	-0.05	0.75	0.80	0.82	2.53	74619	6984	97	0	978	0	0	logfile
✘	7FiX	31605	2023-08-18	2021-08-01	1.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	73929	7137	96	0	444	348	0	logfile
✔	6YJ4	10815	2023-08-13	2020-04-02	2.7	2.35	2.73	2.6	0.011	1.10	0.0	0.65	14.88	0.01	2.031	2.88	0.03	4.1	95.8	0.0	-2.17	0.58	0.79	4.22	2.6	0.005	1.02	0.0	0.18	16.77	0.00	1.387	7.10	1.40	3.4	96.6	0.0	0.78	0.57	0.63	0.84	3.70	66311	8126	94	0	50	275	0	logfile
✘	6KAD	9956	2023-08-26	2019-06-21	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	105342	9734	94	0	560	0	0	logfile
✘	7Uii	26546	2023-08-18	2022-03-29	2.6	2.91	2.65	2.9	0.003	0.61	0.0	0.05	13.58	0.00	2.234	5.76	0.00	5.1	94.9	0.0	-0.77	0.60	0.87	4.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	130944	16926	93	0	186	186	0	logfile
✔	6Q16	20556	2023-08-14	2019-08-02	4.1	4.11	—	4.1	0.007	1.05	0.0	0.06	14.24	0.01	2.214	3.99	0.67	3.6	96.4	0.0	-5.13	0.85	0.83	—	4.1	0.003	0.69	0.0	0.04	13.91	0.00	2.101	9.20	0.01	3.7	96.3	0.0	-0.13	0.76	0.86	0.84	—	118198	14787	93	0	0	0	0	logfile
✔	6ET5	3951	2023-08-21	2017-10-25	2.87	4.09	3.11	3.5	0.025	2.86	202.0	0.21	21.56	0.03	1.592	33.46	8.13	12.2	83.7	4.1	-5.05	0.80	0.85	3.34	3.5	0.004	1.00	0.0	0.04	18.75	0.00	2.042	14.51	1.88	8.8	90.8	0.4	-0.16	1.31	0.79	0.85	3.04	31994	3492	92	0	75	0	0	logfile
✘	7WG5	32477	2023-08-11	2021-12-28	3.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112687	11759	92	0	545	0	0	logfile
✔	7JJJ	22354	2023-08-10	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.79	0.0	0.13	10.01	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.004	0.71	0.0	0.05	12.38	0.00	2.113	11.30	0.00	4.0	96.0	0.0	-0.22	1.44	0.80	0.83	—	54614	6674	92	0	182	0	0	logfile
✘	7DCo	30637	2023-08-18	2020-10-26	2.5	2.59	—	2.6	0.010	1.11	8.0	0.08	13.06	0.01	2.079	5.90	1.87	4.4	95.1	0.5	-3.91	0.53	0.65	3.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	129875	15294	91	556	24	1714	0	logfile
✔	6AZ3	7025	2023-08-17	2017-09-09	2.5	3.08	—	3.1	0.012	1.29	0.0	0.06	16.54	0.03	1.349	4.53	0.96	6.4	93.4	0.2	-4.53	0.54	0.78	5.15	3.1	0.006	0.88	0.0	0.04	17.29	0.01	1.945	8.72	3.08	6.3	93.6	0.1	-1.41	0.34	0.54	0.80	3.89	126561	6390	91	3507	44	1019	0	logfile

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