Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZKK	11252	2023-02-26	2020-06-30	3.7	3.93	—	3.9	0.007	1.02	0.0	1.02	11.66	0.01	2.209	5.94	0.10	5.1	94.8	0.0	-3.56	0.53	0.75	2.24	3.9	0.008	1.61	0.0	0.31	15.90	0.00	2.054	15.92	0.47	4.8	95.2	0.0	-0.49	0.75	0.55	0.76	1.48	67950	8227	68	0	44	0	0	logfile
✔	7V2D	31641	2023-02-25	2021-08-08	3.3	3.60	—	3.6	0.006	0.78	2.0	0.04	16.38	0.01	1.477	10.48	0.18	3.8	96.1	0.1	1.15	0.80	0.87	2.71	3.5	0.007	0.69	0.0	0.05	16.43	0.00	2.076	8.60	0.44	4.6	95.4	0.0	0.93	0.34	0.82	0.90	2.59	66899	8140	68	0	40	0	0	logfile
✔	7W1T	32255	2023-02-26	2021-11-20	3.0	3.11	—	3.1	0.007	0.81	0.0	0.05	15.74	0.01	2.078	8.15	0.14	3.8	96.2	0.1	0.74	0.78	0.86	3.42	3.1	0.004	0.61	0.0	0.04	17.09	0.00	2.091	7.60	1.82	4.0	95.9	0.0	0.94	0.49	0.79	0.89	3.14	68014	8269	68	0	45	0	0	logfile
✔	7PC2	13316	2023-02-26	2021-08-03	2.8	3.39	—	6.5	0.033	1.53	5.0	0.05	15.16	0.01	1.809	8.92	1.49	7.8	92.2	0.0	-3.81	0.43	0.05	-0.14	2.9	0.006	1.00	0.0	0.06	16.43	0.01	2.020	21.81	3.39	7.4	92.6	0.1	-1.61	1.49	0.61	0.43	0.42	27063	3093	68	0	210	0	0	logfile
✔	7VZV	32230	2023-02-26	2021-11-16	3.2	3.41	—	3.3	0.007	0.80	0.0	0.04	17.47	0.01	2.195	7.81	0.29	4.1	95.9	0.0	1.16	0.80	0.89	2.87	3.3	0.002	0.53	0.0	0.04	16.49	0.00	2.082	7.33	0.14	3.6	96.3	0.0	1.30	0.24	0.80	0.89	2.74	68183	8269	68	0	44	0	0	logfile
✔	7W4G	32304	2023-02-26	2021-11-27	3.1	3.14	—	3.1	0.007	0.82	0.0	0.04	18.13	0.01	2.149	7.57	0.24	3.7	96.2	0.1	1.04	0.79	0.88	3.09	3.1	0.002	0.53	0.0	0.04	17.13	0.00	2.115	7.19	0.22	3.9	96.1	0.0	1.29	0.28	0.79	0.88	2.98	68260	8270	68	0	47	0	0	logfile
✔	7V2R	31647	2023-02-26	2021-08-09	2.6	2.62	—	2.6	0.007	0.91	13.0	0.06	17.82	0.01	1.360	8.98	1.24	3.6	96.2	0.1	1.07	0.78	0.87	3.78	2.6	0.003	0.55	0.0	0.04	17.30	0.00	2.179	6.51	1.45	3.8	96.2	0.0	1.20	0.28	0.79	0.89	3.44	68260	8270	68	0	47	0	0	logfile
✔	6ZKS	11260	2023-02-25	2020-06-30	3.1	2.60	—	2.9	0.007	0.99	0.0	1.03	11.50	0.01	2.218	5.14	0.10	3.9	96.1	0.0	-3.09	0.57	0.78	3.67	2.9	0.009	1.60	0.0	0.31	15.92	0.00	2.137	11.67	0.31	3.6	96.4	0.0	0.28	0.65	0.60	0.81	2.88	66294	8070	67	0	36	0	0	logfile
✔	7B93	12095	2023-02-26	2020-12-14	3.04	3.13	3.09	3.0	0.006	0.81	0.0	1.03	14.70	0.00	1.904	7.72	0.03	4.1	95.9	0.0	-3.26	0.76	0.85	4.00	3.0	0.008	1.59	0.0	0.31	15.82	0.00	1.949	7.99	0.14	3.1	96.9	0.0	0.99	1.17	0.77	0.88	3.14	67492	8235	67	0	35	0	0	logfile
✔	7W1P	32254	2023-02-25	2021-11-19	3.1	3.14	—	3.1	0.007	0.76	1.0	0.04	17.57	0.01	2.111	7.49	0.21	3.8	96.1	0.0	1.03	0.80	0.88	2.94	3.1	0.004	0.60	0.0	0.04	17.00	0.00	2.097	7.88	0.24	4.4	95.6	0.0	0.92	0.25	0.81	0.89	2.89	66868	8140	67	0	40	0	0	logfile
✔	7o6Y	12741	2023-02-24	2021-04-12	3.4	3.51	3.37	3.4	0.009	1.09	11.0	0.10	15.47	0.01	1.892	15.31	0.65	3.5	96.4	0.1	-0.16	0.68	0.83	2.82	3.4	0.004	0.65	0.0	0.04	16.47	0.00	1.441	10.50	0.47	3.6	96.4	0.0	0.44	1.03	0.71	0.85	2.46	64866	7927	67	0	49	0	0	logfile
✔	6ZKT	11261	2023-02-25	2020-06-30	2.8	2.58	—	2.8	0.008	1.00	0.0	1.03	11.56	0.01	2.200	4.90	0.07	3.9	96.1	0.0	-2.94	0.57	0.81	4.03	2.8	0.009	1.61	0.0	0.31	16.51	0.00	2.075	11.61	2.18	3.6	96.4	0.0	0.31	1.63	0.59	0.83	3.13	66294	8070	67	0	36	0	0	logfile
✔	7W2Y	32267	2023-02-26	2021-11-24	2.7	2.80	—	2.8	0.008	0.80	1.0	0.04	17.91	0.01	2.196	6.93	1.05	3.1	96.8	0.1	0.97	0.79	0.89	3.92	2.8	0.003	0.56	0.0	0.04	17.31	0.00	2.143	6.53	1.76	3.1	96.9	0.1	1.35	1.10	0.78	0.88	3.69	68232	8270	67	0	46	0	0	logfile
✔	7V30	31648	2023-02-25	2021-08-10	2.7	2.83	—	2.8	0.007	0.83	3.0	0.05	15.59	0.01	1.788	9.45	0.21	3.7	96.2	0.1	1.16	0.78	0.86	3.12	2.8	0.004	0.62	0.0	0.04	17.26	0.01	2.066	7.29	1.36	4.1	95.8	0.0	0.68	0.37	0.78	0.88	3.08	66820	8140	67	0	39	0	0	logfile
✔	6ZKM	11254	2023-02-25	2020-06-30	2.8	2.40	—	2.6	0.008	1.03	0.0	1.04	11.60	0.01	2.229	5.03	0.10	3.5	96.5	0.0	-2.74	0.65	0.82	4.06	2.7	0.008	1.60	0.0	0.31	16.48	0.00	2.084	11.77	1.98	3.0	97.0	0.0	0.60	1.25	0.65	0.84	3.21	65955	8002	67	0	41	0	0	logfile
✔	6ZKN	11255	2023-02-25	2020-06-30	2.9	2.40	—	2.6	0.008	1.03	0.0	1.04	11.60	0.01	2.229	5.03	0.10	3.5	96.5	0.0	-2.74	0.65	0.82	4.06	2.7	0.008	1.60	0.0	0.31	16.48	0.00	2.084	11.77	1.98	3.0	97.0	0.0	0.60	1.25	0.66	0.84	3.21	65955	8002	67	0	41	0	0	logfile
✔	7V2K	31646	2023-02-25	2021-08-09	2.7	2.78	—	2.8	0.007	0.90	9.0	0.05	15.50	0.01	1.354	13.49	0.40	3.7	96.2	0.1	1.05	0.77	0.83	3.21	2.7	0.003	0.62	0.0	0.04	16.96	0.00	2.054	8.41	1.70	3.9	96.0	0.1	0.99	0.43	0.79	0.86	3.01	66880	8174	67	0	38	0	0	logfile
✔	7W1V	32257	2023-02-26	2021-11-20	3.0	3.04	—	3.0	0.008	0.81	1.0	0.04	18.73	0.01	2.140	8.26	1.69	3.1	96.9	0.0	1.09	0.78	0.87	3.16	3.0	0.003	0.55	0.0	0.04	17.92	0.00	2.143	7.73	2.51	3.4	96.5	0.0	1.09	0.29	0.78	0.87	3.11	68209	8270	67	0	46	0	0	logfile
✔	7W4M	32308	2023-02-25	2021-11-28	3.3	3.38	—	3.3	0.007	0.78	0.0	0.05	17.29	0.01	2.052	9.31	0.43	4.4	95.6	0.1	1.06	0.78	0.85	2.29	3.3	0.004	0.60	0.0	0.04	16.99	0.00	2.080	8.50	0.58	4.7	95.3	0.0	0.96	0.40	0.78	0.87	2.27	66210	8140	67	0	34	0	0	logfile
✔	7W00	32232	2023-02-25	2021-11-17	3.5	3.66	—	3.6	0.006	0.78	0.0	0.04	18.05	0.01	2.199	8.77	0.37	3.8	96.2	0.0	1.04	0.78	0.87	2.25	3.6	0.003	0.56	0.0	0.04	17.17	0.00	2.156	8.34	0.28	3.9	96.1	0.0	1.17	0.26	0.78	0.87	2.18	66775	8140	67	0	39	0	0	logfile

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