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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5XTH | 6775 | 2024-03-12 | 2017-06-19 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115642 | 14193 | 113 | 0 | 63 | 0 | 0 | logfile |
✔ | 7R44 | 14266 | 2024-03-15 | 2022-02-08 | 2.4 | 2.43 | — | 2.4 | 0.007 | 0.81 | 0.0 | 0.84 | 16.35 | 0.01 | 1.908 | 3.31 | 0.00 | 2.5 | 97.5 | 0.0 | 0.40 | 0.70 | 0.90 | 6.05 | 2.5 | 0.007 | 1.33 | 1.0 | 0.26 | 16.49 | 0.00 | 1.880 | 4.75 | 1.08 | 1.8 | 98.2 | 0.0 | 1.63 | 0.31 | 0.70 | 0.91 | 5.24 | 68213 | 8163 | 113 | 0 | 50 | 905 | 0 | logfile |
✔ | 7N8o | 24239 | 2024-03-11 | 2021-06-15 | 1.93 | 1.73 | — | 1.9 | 0.025 | 2.40 | 0.0 | 0.11 | 22.23 | 0.01 | 1.522 | 14.77 | 1.91 | 3.0 | 96.9 | 0.1 | 0.75 | 0.73 | 0.75 | 5.48 | 1.8 | 0.004 | 0.76 | 0.0 | 0.05 | 18.02 | 0.01 | 2.008 | 11.90 | 1.84 | 2.9 | 97.1 | 0.0 | 0.97 | 0.35 | 0.75 | 0.77 | 5.38 | 54656 | 5544 | 113 | 0 | 228 | 1236 | 0 | logfile |
✔ | 5WFK | 8828 | 2024-03-02 | 2017-07-12 | 3.4 | 3.64 | 3.59 | 3.6 | 0.008 | 1.11 | 3.0 | 0.10 | 24.20 | 0.02 | 1.013 | 3.73 | 3.19 | 9.7 | 88.0 | 2.3 | -4.14 | 0.77 | 0.78 | 1.88 | 3.6 | 0.008 | 0.91 | 0.0 | 0.04 | 23.93 | 0.01 | 1.583 | 16.50 | 7.30 | 11.3 | 88.1 | 0.6 | -2.31 | 1.66 | 0.82 | 0.83 | 1.72 | 154325 | 6324 | 113 | 4802 | 1415 | 419 | 0 | logfile |
✘ | 6K33 | 9908 | 2024-03-18 | 2019-05-16 | 2.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137634 | 12681 | 112 | 0 | 759 | 21 | 0 | logfile |
✔ | 7o3Y | 12712 | 2024-03-03 | 2021-04-03 | 3.8 | 5.36 | 4.02 | 6.6 | 0.017 | 1.23 | 0.0 | 0.07 | 17.47 | 0.01 | 1.232 | 13.83 | 1.39 | 2.3 | 97.7 | 0.0 | 2.03 | 0.56 | 0.43 | -1.05 | 6.8 | 0.005 | 1.22 | 0.0 | 0.05 | 19.41 | 0.01 | 2.016 | 33.38 | 2.63 | 1.6 | 98.4 | 0.0 | 1.62 | 2.04 | 0.77 | 0.83 | -0.20 | 158288 | 20576 | 112 | 0 | 16 | 0 | 0 | logfile |
✔ | 7R41 | 14251 | 2024-03-15 | 2022-02-08 | 2.3 | 2.35 | — | 2.4 | 0.008 | 0.85 | 0.0 | 0.84 | 18.23 | 0.01 | 1.904 | 3.40 | 1.01 | 2.4 | 97.5 | 0.0 | 0.57 | 0.71 | 0.90 | 5.72 | 2.4 | 0.007 | 1.30 | 0.0 | 0.25 | 16.95 | 0.00 | 2.011 | 4.67 | 1.34 | 1.8 | 98.2 | 0.0 | 1.68 | 0.78 | 0.71 | 0.91 | 5.16 | 69138 | 8194 | 111 | 0 | 57 | 1307 | 0 | logfile |
✔ | 8FTo | 29449 | 2024-03-23 | 2023-01-12 | 1.85 | 1.97 | — | 1.9 | 0.008 | 0.91 | 7.0 | 0.06 | 23.31 | 0.02 | 0.347 | 6.95 | 3.59 | 3.7 | 95.6 | 0.7 | -0.14 | 0.73 | 0.86 | 5.85 | 2.0 | 0.004 | 0.75 | 0.0 | 0.04 | 22.91 | 0.01 | 1.819 | 5.37 | 2.14 | 3.1 | 96.8 | 0.1 | 0.59 | 0.88 | 0.74 | 0.89 | 5.84 | 146562 | 5584 | 111 | 4490 | 286 | 6114 | 0 | logfile |
✔ | 7R4G | 14307 | 2024-03-12 | 2022-02-08 | 2.5 | 2.48 | — | 2.5 | 0.008 | 0.81 | 0.0 | 0.86 | 16.79 | 0.01 | 1.869 | 4.23 | 0.03 | 3.2 | 96.8 | 0.0 | -0.01 | 0.70 | 0.89 | 5.55 | 2.5 | 0.007 | 1.33 | 0.0 | 0.26 | 16.66 | 0.00 | 2.169 | 5.05 | 0.97 | 2.1 | 97.8 | 0.0 | 1.43 | 0.79 | 0.70 | 0.90 | 4.63 | 65153 | 7802 | 111 | 0 | 47 | 851 | 0 | logfile |
✘ | 8QN6 | 18508 | 2024-03-22 | 2023-09-25 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32010 | 4180 | 110 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WF0 | 8826 | 2024-03-02 | 2017-07-11 | 3.6 | 3.35 | 3.39 | 3.3 | 0.008 | 1.12 | 3.0 | 0.10 | 24.25 | 0.02 | 0.789 | 3.28 | 4.47 | 9.7 | 87.8 | 2.4 | -4.19 | 0.75 | 0.77 | 2.17 | 3.3 | 0.007 | 0.84 | 0.0 | 0.04 | 23.77 | 0.01 | 1.731 | 13.45 | 4.86 | 9.3 | 90.1 | 0.6 | -1.95 | 3.01 | 0.80 | 0.79 | 2.05 | 154600 | 6324 | 110 | 4802 | 1486 | 676 | 0 | logfile |
✔ | 7QSL | 14133 | 2024-03-15 | 2022-01-13 | 2.76 | 2.80 | 2.81 | 2.7 | 0.010 | 0.96 | 0.0 | 0.84 | 15.28 | 0.00 | 1.710 | 3.91 | 0.06 | 3.1 | 96.8 | 0.0 | -0.57 | 0.78 | 0.89 | 5.14 | 2.8 | 0.007 | 1.30 | 0.0 | 0.25 | 16.18 | 0.00 | 2.046 | 5.62 | 0.89 | 1.9 | 98.1 | 0.0 | 1.53 | 0.87 | 0.78 | 0.90 | 4.14 | 69733 | 8287 | 109 | 0 | 56 | 1024 | 0 | logfile |
✔ | 7R43 | 14261 | 2024-03-15 | 2022-02-08 | 2.4 | 2.41 | — | 2.5 | 0.007 | 0.79 | 0.0 | 0.84 | 16.09 | 0.00 | 1.899 | 3.40 | 0.01 | 2.5 | 97.4 | 0.0 | 0.39 | 0.69 | 0.89 | 5.73 | 2.4 | 0.007 | 1.30 | 0.0 | 0.25 | 16.43 | 0.00 | 2.127 | 4.42 | 0.90 | 1.7 | 98.2 | 0.0 | 1.61 | 0.31 | 0.69 | 0.90 | 4.92 | 68334 | 8188 | 109 | 0 | 47 | 885 | 0 | logfile |
✔ | 6WKV | 21810 | 2024-03-15 | 2020-04-17 | 2.99 | 2.74 | — | 2.9 | 0.012 | 0.66 | 0.0 | 0.06 | 16.80 | 0.00 | 2.116 | 10.99 | 3.10 | 6.7 | 93.3 | 0.0 | -4.68 | 0.81 | 0.85 | 3.88 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 18.47 | 0.00 | 2.151 | 4.66 | 1.81 | 2.2 | 97.8 | 0.0 | -0.17 | 0.51 | 0.81 | 0.87 | 2.93 | 126600 | 15420 | 108 | 0 | 60 | 0 | 0 | logfile |
✘ | 7D1T | 30547 | 2024-03-10 | 2020-09-15 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52994 | 5312 | 108 | 0 | 196 | 2432 | 0 | logfile |
✘ | 7oUi | 13078 | 2024-03-18 | 2021-06-11 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 84427 | 8342 | 108 | 0 | 374 | 139 | 0 | logfile |
✔ | 6KiG | 9995 | 2024-03-20 | 2019-07-18 | 2.9 | 2.98 | — | 2.9 | 0.009 | 1.25 | 0.0 | 0.06 | 20.73 | 0.01 | 2.255 | 8.20 | 0.03 | 2.9 | 97.1 | 0.0 | -2.57 | 0.69 | 0.74 | 2.49 | 2.9 | 0.005 | 0.74 | 5.0 | 0.05 | 19.49 | 0.01 | 1.247 | 18.58 | 3.24 | 4.0 | 96.0 | 0.0 | 0.13 | 1.28 | 0.74 | 0.80 | 2.39 | 143022 | 12888 | 108 | 0 | 846 | 54 | 0 | logfile |
✘ | 5GUP | 9539 | 2024-03-11 | 2016-08-30 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109982 | 13895 | 107 | 0 | 77 | 0 | 0 | logfile |
✔ | 8oLT | 16962 | 2024-03-14 | 2023-03-30 | 2.84 | 2.41 | 2.82 | 2.8 | 0.010 | 0.93 | 0.0 | 1.02 | 16.67 | 0.01 | 1.872 | 5.36 | 0.38 | 4.7 | 95.2 | 0.1 | -1.43 | 0.60 | 0.83 | 4.32 | 2.8 | 0.008 | 1.58 | 0.0 | 0.31 | 16.95 | 0.00 | 2.101 | 6.61 | 2.25 | 2.5 | 97.5 | 0.0 | 0.97 | 1.56 | 0.61 | 0.85 | 3.70 | 68075 | 8213 | 106 | 0 | 56 | 280 | 0 | logfile |
✔ | 6WL8 | 21817 | 2024-03-19 | 2020-04-18 | 4.1 | 4.58 | — | 4.3 | 0.005 | 0.65 | 0.0 | 0.05 | 15.48 | 0.00 | 2.395 | 2.78 | 0.00 | 0.0 | 100.0 | 0.0 | -1.08 | 0.73 | 0.86 | — | 4.2 | 0.004 | 0.60 | 0.0 | 0.04 | 15.43 | 0.00 | 2.309 | 11.45 | 0.00 | 0.3 | 99.7 | 0.0 | 4.44 | 1.80 | 0.75 | 0.88 | — | 23850 | 3074 | 106 | 0 | 0 | 0 | 0 | logfile |