Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7UNC	26620	2023-08-09	2022-04-10	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	105726	7924	38	311	9	0	48096	logfile
✔	7UXC	26857	2023-08-23	2022-05-05	3.2	3.49	3.37	3.4	0.005	0.89	0.0	0.11	14.70	0.01	1.971	1.67	0.00	4.7	95.2	0.1	-1.42	0.78	0.76	2.02	3.4	0.003	0.56	0.0	0.04	15.49	0.00	1.880	7.29	0.11	4.2	95.7	0.1	0.67	1.18	0.79	0.80	2.18	95147	5959	23	2	5	0	47565	logfile
✔	8E2i	27837	2023-08-22	2022-08-15	3.04	3.45	3.37	3.1	0.004	0.60	0.0	0.04	15.47	0.00	1.925	7.78	0.83	1.8	98.2	0.0	1.23	0.64	0.64	1.06	3.2	0.003	0.61	0.0	0.04	15.97	0.00	1.939	12.77	0.31	3.4	96.6	0.0	0.90	0.87	0.65	0.66	0.98	92676	5836	6	0	114	0	46502	logfile
✔	7oo3	13004	2023-08-24	2021-05-26	2.8	2.93	2.82	2.9	0.010	0.90	0.0	0.06	15.11	0.01	1.919	4.52	0.00	3.8	96.2	0.0	-1.32	0.78	0.81	4.02	2.9	0.005	0.59	0.0	0.04	16.83	0.00	1.886	8.82	0.85	4.1	95.9	0.0	-0.09	1.57	0.74	0.80	3.75	95846	6020	26	92	44	0	46456	logfile
✔	7TEJ	25847	2023-08-22	2022-01-05	2.74	2.95	—	3.0	0.004	0.58	0.0	0.04	12.22	0.00	1.920	4.81	0.00	1.4	98.6	0.0	1.11	0.71	0.78	3.62	3.0	0.003	0.52	0.0	0.04	15.11	0.00	1.989	4.73	1.07	1.4	98.6	0.0	1.50	0.61	0.73	0.82	2.99	91490	5863	28	0	0	0	45742	logfile
✘	7QHM	13976	2023-08-24	2021-12-13	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94633	5886	67	0	88	416	45103	logfile
✘	7QHo	13977	2023-08-23	2021-12-13	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93446	5870	54	0	78	10	44952	logfile
✔	7WBV	32407	2023-08-22	2021-12-17	4.1	4.41	—	4.0	0.004	0.62	0.0	0.04	18.74	0.00	1.842	12.31	0.00	5.9	94.1	0.1	-0.61	0.80	0.73	—	4.0	0.004	0.60	0.0	0.04	19.08	0.00	1.848	12.34	0.00	7.3	92.6	0.1	-0.68	1.15	0.80	0.72	—	92340	5125	34	329	11	0	44823	logfile
✔	7WBX	32409	2023-08-22	2021-12-17	4.0	4.29	—	3.9	0.004	0.58	0.0	0.04	18.39	0.00	1.892	9.75	0.00	4.7	95.3	0.1	-0.13	0.80	0.76	—	3.9	0.003	0.56	0.0	0.04	19.06	0.00	1.835	9.56	0.04	5.4	94.5	0.0	0.24	1.12	0.81	0.76	—	91763	5125	34	311	11	0	44620	logfile
✔	6TDV	10468	2023-08-23	2019-11-10	2.8	3.00	2.85	3.0	0.009	1.08	0.0	0.04	16.68	0.00	2.093	3.34	0.00	2.6	97.4	0.0	-1.24	0.66	0.82	4.29	3.0	0.003	0.63	0.0	0.04	17.08	0.00	1.961	7.68	0.94	1.8	98.2	0.0	1.92	0.78	0.64	0.84	4.01	92262	5464	62	0	61	0	44516	logfile
✔	7ooB	13009	2023-08-22	2021-05-27	2.7	2.65	2.56	2.6	0.005	0.75	0.0	0.05	15.30	0.00	1.918	4.21	0.00	4.0	96.0	0.0	-1.31	0.78	0.81	3.80	2.6	0.004	0.60	0.0	0.04	17.39	0.00	1.766	7.90	0.94	3.9	96.1	0.0	-0.17	1.24	0.79	0.84	3.64	90745	5550	25	92	12	0	44484	logfile
✘	7RH7	24457	2023-08-23	2021-07-16	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93207	6072	44	0	64	0	44381	logfile
✘	7RH5	24455	2023-08-23	2021-07-16	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93342	6072	44	0	66	0	44380	logfile
✔	5JZH	8185	2023-08-22	2016-05-16	3.9	4.02	—	4.0	0.015	2.15	0.0	0.08	10.55	0.02	1.650	4.16	0.00	9.4	87.9	2.7	-1.57	0.81	0.81	2.71	4.0	0.003	0.63	0.0	0.04	14.24	0.00	1.878	8.40	0.12	7.7	92.3	0.0	-1.12	0.97	0.78	0.84	1.97	90790	5936	14	0	0	0	44226	logfile
✔	8C5i	16437	2023-08-21	2023-01-09	3.15	3.22	—	3.2	0.004	0.56	0.0	0.04	16.20	0.00	1.942	3.57	0.12	5.1	94.7	0.2	-0.98	0.64	0.85	4.24	3.2	0.003	0.55	0.0	0.04	16.56	0.00	1.952	4.28	0.08	4.9	94.7	0.4	-0.87	0.27	0.63	0.85	4.00	89156	5706	18	0	0	0	43742	logfile
✘	7RH6	24456	2023-08-22	2021-07-16	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	90627	5901	42	0	60	0	43188	logfile
✔	8B6J	15868	2023-08-23	2022-09-27	2.8	3.12	2.93	3.2	0.004	0.54	0.0	0.04	14.48	0.00	1.951	5.28	0.67	2.0	98.0	0.0	1.22	0.53	0.62	0.70	3.2	0.003	0.53	0.0	0.04	16.79	0.00	1.940	11.18	1.64	3.5	96.5	0.0	0.51	1.17	0.60	0.79	3.06	89526	5313	38	0	175	0	42507	logfile
✔	8E48	27883	2023-08-13	2022-08-17	2.27	2.95	2.47	2.8	0.005	0.52	0.0	0.03	12.64	0.02	1.808	1.21	0.53	4.6	95.4	0.0	0.36	0.69	0.84	3.07	2.7	0.005	0.72	0.0	0.04	13.92	0.01	1.776	1.71	1.70	6.1	93.8	0.1	-0.67	0.72	0.71	0.90	5.14	115959	1179	11	3016	1	0	41918	logfile
✔	8E47	27882	2023-08-13	2022-08-17	2.32	2.95	2.51	2.8	0.005	0.42	0.0	0.09	12.59	0.02	1.901	1.08	0.96	3.9	96.1	0.0	0.60	0.74	0.91	4.96	2.8	0.004	0.66	0.0	0.05	13.83	0.01	1.902	2.04	1.49	5.2	94.7	0.1	-0.63	0.28	0.70	0.89	5.32	115917	1179	11	3016	1	0	41886	logfile
✔	8E49	27884	2023-08-13	2022-08-17	2.05	2.78	2.50	2.5	0.005	0.42	0.0	0.03	12.72	0.02	1.945	1.31	0.85	4.6	95.4	0.0	0.91	0.71	0.91	5.79	2.5	0.005	0.61	0.0	0.04	13.66	0.01	1.904	2.39	1.38	5.2	94.8	0.1	0.05	0.23	0.70	0.92	5.98	115871	1179	11	3016	1	0	41885	logfile

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