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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6YY0 | 11001 | 2023-02-23 | 2020-05-04 | 3.23 | 3.34 | 3.07 | 3.3 | 0.006 | 0.68 | 0.0 | 0.04 | 15.27 | 0.00 | 1.847 | 8.18 | 0.00 | 8.4 | 91.6 | 0.0 | -0.84 | 0.72 | 0.84 | 2.97 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 16.09 | 0.00 | 1.781 | 5.95 | 0.16 | 4.2 | 95.8 | 0.0 | 0.39 | 0.33 | 0.73 | 0.85 | 2.64 | 61162 | 3926 | 25 | 0 | 11 | 17 | 30826 | logfile |
✔ | 6Fo0 | 4286 | 2023-02-23 | 2018-02-05 | 4.1 | 4.16 | 2.43 | 4.1 | 0.012 | 0.96 | 0.0 | 0.05 | 8.97 | 0.01 | 2.040 | 5.54 | 0.00 | 10.2 | 89.8 | 0.1 | -4.55 | 0.72 | 0.79 | — | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 12.56 | 0.00 | 1.904 | 10.30 | 0.00 | 5.8 | 94.2 | 0.0 | -1.21 | 2.42 | 0.74 | 0.81 | — | 61356 | 3910 | 24 | 0 | 8 | 0 | 30362 | logfile |
✔ | 7RFG | 24441 | 2023-02-23 | 2021-07-14 | 2.6 | 2.42 | — | 2.4 | 0.013 | 2.03 | 27.0 | 0.11 | 18.66 | 0.02 | 2.518 | 1.16 | 1.84 | 4.2 | 95.6 | 0.2 | -0.50 | 0.62 | 0.80 | 5.41 | 2.4 | 0.003 | 0.65 | 0.0 | 0.06 | 19.11 | 0.00 | 1.929 | 6.28 | 1.38 | 2.8 | 97.2 | 0.0 | 0.25 | 1.64 | 0.64 | 0.82 | 4.89 | 60824 | 3928 | 16 | 0 | 32 | 0 | 30240 | logfile |
✔ | 5FN1 | 3236 | 2023-02-23 | 2015-11-10 | 3.9 | 4.00 | — | 4.7 | 0.009 | 1.18 | 0.0 | 0.07 | 11.47 | 0.00 | 0.877 | 53.81 | 0.00 | 8.8 | 88.4 | 2.8 | -3.37 | 0.24 | 0.29 | 0.57 | 3.9 | 0.005 | 0.87 | 0.0 | 0.04 | 16.79 | 0.01 | 1.856 | 24.08 | 1.08 | 13.3 | 85.7 | 1.0 | -1.33 | 2.15 | 0.41 | 0.75 | 0.99 | 61308 | 3906 | 36 | 90 | 0 | 0 | 30078 | logfile |
✘ | 7RGM | 24452 | 2023-02-23 | 2021-07-15 | 2.8 | 2.86 | — | 2.9 | 0.014 | 1.70 | 0.0 | 0.08 | 15.75 | 0.01 | 2.328 | 1.94 | 3.63 | 5.2 | 94.6 | 0.3 | -1.77 | 0.62 | 0.86 | 3.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 59928 | 3872 | 16 | 0 | 32 | 0 | 29736 | logfile |
✔ | 7L2Z | 23146 | 2023-02-22 | 2020-12-17 | 3.4 | 3.78 | — | 3.7 | 0.002 | 0.50 | 1.0 | 0.05 | 12.49 | 0.00 | 1.866 | 2.68 | 0.63 | 3.6 | 96.4 | 0.0 | -2.91 | 0.74 | 0.75 | 1.52 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 14.02 | 0.00 | 1.848 | 6.61 | 0.03 | 5.8 | 94.2 | 0.0 | -1.22 | 0.79 | 0.77 | 0.82 | 2.22 | 59631 | 3866 | 6 | 0 | 0 | 0 | 29676 | logfile |
✔ | 7RGQ | 24454 | 2023-02-23 | 2021-07-15 | 3.9 | 3.65 | — | 3.7 | 0.013 | 1.98 | 9.0 | 0.09 | 17.74 | 0.01 | 2.357 | 2.12 | 2.74 | 6.9 | 92.4 | 0.7 | -1.98 | 0.56 | 0.81 | 3.07 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 17.65 | 0.00 | 1.968 | 11.43 | 0.32 | 5.9 | 94.1 | 0.0 | -0.97 | 1.77 | 0.55 | 0.81 | 2.30 | 59832 | 3848 | 16 | 0 | 40 | 0 | 29544 | logfile |
✔ | 7RFE | 24439 | 2023-02-22 | 2021-07-14 | 2.6 | 2.27 | — | 2.5 | 0.013 | 2.07 | 13.0 | 0.10 | 19.39 | 0.02 | 2.500 | 1.13 | 2.87 | 3.5 | 96.2 | 0.2 | -0.73 | 0.60 | 0.78 | 5.31 | 2.5 | 0.004 | 0.66 | 0.0 | 0.04 | 18.23 | 0.00 | 1.877 | 7.03 | 1.31 | 3.2 | 96.8 | 0.0 | 0.82 | 0.77 | 0.63 | 0.82 | 4.32 | 58720 | 3800 | 16 | 0 | 32 | 0 | 29200 | logfile |
✔ | 6PMi | 20394 | 2023-02-22 | 2019-07-02 | 3.86 | 4.66 | — | 4.1 | 0.012 | 1.26 | 0.0 | 0.06 | 15.81 | 0.01 | 1.949 | 12.35 | 0.24 | 10.7 | 88.9 | 0.4 | -4.48 | 0.69 | 0.51 | 0.20 | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 17.32 | 0.00 | 1.819 | 21.88 | 0.54 | 10.0 | 89.9 | 0.1 | -2.32 | 1.00 | 0.86 | 0.77 | 0.35 | 57985 | 3453 | 10 | 110 | 4 | 0 | 28610 | logfile |
✔ | 6PMJ | 20395 | 2023-02-22 | 2019-07-02 | 3.91 | 5.34 | — | 4.4 | 0.011 | 1.21 | 0.0 | 0.06 | 15.82 | 0.01 | 2.011 | 11.04 | 0.31 | 10.4 | 89.3 | 0.3 | -4.41 | 0.67 | 0.43 | 0.20 | 4.4 | 0.003 | 0.71 | 0.0 | 0.04 | 17.51 | 0.00 | 1.817 | 21.36 | 0.34 | 8.4 | 91.4 | 0.1 | -2.26 | 1.66 | 0.89 | 0.77 | 0.03 | 57984 | 3453 | 10 | 110 | 4 | 0 | 28609 | logfile |
✔ | 8ET3 | 28585 | 2023-02-22 | 2022-10-16 | 3.7 | 4.31 | 3.57 | 3.7 | 0.003 | 0.61 | 0.0 | 0.04 | 12.50 | 0.00 | 2.082 | 2.30 | 0.00 | 0.3 | 99.7 | 0.0 | -0.04 | 0.86 | 0.78 | 2.35 | 3.7 | 0.003 | 0.51 | 0.0 | 0.04 | 14.14 | 0.00 | 1.961 | 6.52 | 0.16 | 2.9 | 97.1 | 0.0 | 1.24 | 0.69 | 0.86 | 0.80 | 2.18 | 56854 | 3639 | 22 | 0 | 6 | 0 | 28542 | logfile |
✔ | 6XZQ | 10665 | 2023-02-22 | 2020-02-05 | 3.6 | 4.18 | 3.53 | 3.7 | 0.005 | 0.64 | 0.0 | 0.04 | 15.64 | 0.01 | 1.924 | 5.93 | 1.26 | 5.0 | 95.0 | 0.0 | -2.44 | 0.89 | 0.79 | 1.95 | 3.8 | 0.003 | 0.57 | 0.0 | 0.04 | 15.83 | 0.00 | 1.951 | 8.55 | 0.10 | 4.5 | 95.5 | 0.0 | -0.15 | 0.76 | 0.90 | 0.82 | 1.89 | 56888 | 3492 | 8 | 19 | 0 | 0 | 28480 | logfile |
✔ | 7M05 | 23609 | 2023-02-22 | 2021-03-10 | 2.39 | 2.66 | 2.49 | 2.6 | 0.013 | 0.89 | 0.0 | 0.06 | 14.64 | 0.01 | 2.064 | 3.66 | 0.50 | 6.9 | 92.3 | 0.8 | -3.01 | 0.75 | 0.81 | 4.52 | 2.6 | 0.004 | 0.63 | 0.0 | 0.05 | 16.24 | 0.00 | 2.046 | 3.05 | 1.19 | 3.6 | 96.3 | 0.1 | 0.16 | 1.27 | 0.79 | 0.84 | 4.23 | 57152 | 3636 | 12 | 0 | 4 | 0 | 28188 | logfile |
✔ | 6E9Y | 9020 | 2023-02-21 | 2018-08-01 | 4.3 | 4.50 | — | 4.3 | 0.008 | 0.73 | 0.0 | 0.04 | 7.51 | 0.00 | 1.433 | 25.35 | 0.00 | 3.1 | 96.9 | 0.0 | -3.58 | 0.75 | 0.80 | — | 4.3 | 0.005 | 0.58 | 0.0 | 0.03 | 11.10 | 0.00 | 2.001 | 10.39 | 0.00 | 1.7 | 98.3 | 0.0 | 1.61 | 1.51 | 0.76 | 0.82 | — | 54450 | 3405 | 15 | 0 | 0 | 0 | 28155 | logfile |
✔ | 6Yo0 | 10862 | 2023-02-22 | 2020-04-14 | 2.9 | 3.37 | 2.94 | 3.1 | 0.009 | 0.75 | 0.0 | 0.04 | 9.57 | 0.00 | 1.889 | 11.21 | 0.27 | 3.7 | 96.3 | 0.0 | -0.60 | 0.84 | 0.87 | 3.83 | 3.1 | 0.004 | 0.57 | 0.0 | 0.04 | 13.62 | 0.00 | 1.300 | 8.27 | 0.64 | 4.4 | 95.6 | 0.0 | 1.08 | 0.80 | 0.84 | 0.89 | 3.23 | 55780 | 3598 | 17 | 0 | 10 | 0 | 28102 | logfile |
✔ | 7RJA | 24482 | 2023-02-22 | 2021-07-20 | 3.0 | 3.57 | — | 3.5 | 0.006 | 0.65 | 0.0 | 0.04 | 13.44 | 0.00 | 1.839 | 9.52 | 0.07 | 4.1 | 95.9 | 0.0 | 0.19 | 0.65 | 0.78 | 3.99 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 15.38 | 0.00 | 1.940 | 9.11 | 1.07 | 3.7 | 96.3 | 0.0 | 0.97 | 1.13 | 0.64 | 0.79 | 3.52 | 57452 | 3812 | 24 | 0 | 12 | 0 | 28034 | logfile |
✔ | 8CXN | 27061 | 2023-02-22 | 2022-05-22 | 2.9 | 3.69 | 2.99 | 3.3 | 0.002 | 0.47 | 3.0 | 0.05 | 11.31 | 0.00 | 1.974 | 5.44 | 0.06 | 3.5 | 96.4 | 0.1 | 0.27 | 0.78 | 0.71 | 1.63 | 3.4 | 0.003 | 0.53 | 3.0 | 0.04 | 12.80 | 0.00 | 1.864 | 9.70 | 0.59 | 5.7 | 94.3 | 0.1 | -0.77 | 0.46 | 0.79 | 0.73 | 1.63 | 57131 | 3678 | 9 | 0 | 30 | 0 | 27987 | logfile |
✔ | 8CYA | 27072 | 2023-02-22 | 2022-05-23 | 2.7 | 3.50 | 2.73 | 3.0 | 0.002 | 0.44 | 0.0 | 0.04 | 11.93 | 0.00 | 1.935 | 6.76 | 0.06 | 4.8 | 95.0 | 0.2 | 0.52 | 0.83 | 0.75 | 1.85 | 3.1 | 0.004 | 0.49 | 0.0 | 0.04 | 13.00 | 0.00 | 1.982 | 10.17 | 0.53 | 5.3 | 94.6 | 0.2 | 0.03 | 0.39 | 0.85 | 0.79 | 2.17 | 57833 | 3681 | 29 | 0 | 88 | 0 | 27935 | logfile |
✘ | 7RJE | 24486 | 2023-02-22 | 2021-07-20 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57232 | 3818 | 24 | 0 | 10 | 0 | 27924 | logfile |
✔ | 8CXQ | 27067 | 2023-02-22 | 2022-05-22 | 2.3 | 3.31 | 2.77 | 3.1 | 0.002 | 0.45 | 0.0 | 0.04 | 10.31 | 0.00 | 2.008 | 5.61 | 0.22 | 3.9 | 96.0 | 0.1 | 0.30 | 0.78 | 0.80 | 2.66 | 3.1 | 0.003 | 0.51 | 0.0 | 0.04 | 12.17 | 0.00 | 1.891 | 6.73 | 0.66 | 4.5 | 95.5 | 0.0 | -0.06 | 0.39 | 0.73 | 0.75 | 2.47 | 56384 | 3666 | 6 | 0 | 0 | 0 | 27792 | logfile |