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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7UNC | 26620 | 2023-08-09 | 2022-04-10 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105726 | 7924 | 38 | 311 | 9 | 0 | 48096 | logfile |
✔ | 7UXC | 26857 | 2023-08-23 | 2022-05-05 | 3.2 | 3.49 | 3.37 | 3.4 | 0.005 | 0.89 | 0.0 | 0.11 | 14.70 | 0.01 | 1.971 | 1.67 | 0.00 | 4.7 | 95.2 | 0.1 | -1.42 | 0.78 | 0.76 | 2.02 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 15.49 | 0.00 | 1.880 | 7.29 | 0.11 | 4.2 | 95.7 | 0.1 | 0.67 | 1.18 | 0.79 | 0.80 | 2.18 | 95147 | 5959 | 23 | 2 | 5 | 0 | 47565 | logfile |
✔ | 8E2i | 27837 | 2023-08-22 | 2022-08-15 | 3.04 | 3.45 | 3.37 | 3.1 | 0.004 | 0.60 | 0.0 | 0.04 | 15.47 | 0.00 | 1.925 | 7.78 | 0.83 | 1.8 | 98.2 | 0.0 | 1.23 | 0.64 | 0.64 | 1.06 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 15.97 | 0.00 | 1.939 | 12.77 | 0.31 | 3.4 | 96.6 | 0.0 | 0.90 | 0.87 | 0.65 | 0.66 | 0.98 | 92676 | 5836 | 6 | 0 | 114 | 0 | 46502 | logfile |
✔ | 7oo3 | 13004 | 2023-08-24 | 2021-05-26 | 2.8 | 2.93 | 2.82 | 2.9 | 0.010 | 0.90 | 0.0 | 0.06 | 15.11 | 0.01 | 1.919 | 4.52 | 0.00 | 3.8 | 96.2 | 0.0 | -1.32 | 0.78 | 0.81 | 4.02 | 2.9 | 0.005 | 0.59 | 0.0 | 0.04 | 16.83 | 0.00 | 1.886 | 8.82 | 0.85 | 4.1 | 95.9 | 0.0 | -0.09 | 1.57 | 0.74 | 0.80 | 3.75 | 95846 | 6020 | 26 | 92 | 44 | 0 | 46456 | logfile |
✔ | 7TEJ | 25847 | 2023-08-22 | 2022-01-05 | 2.74 | 2.95 | — | 3.0 | 0.004 | 0.58 | 0.0 | 0.04 | 12.22 | 0.00 | 1.920 | 4.81 | 0.00 | 1.4 | 98.6 | 0.0 | 1.11 | 0.71 | 0.78 | 3.62 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 15.11 | 0.00 | 1.989 | 4.73 | 1.07 | 1.4 | 98.6 | 0.0 | 1.50 | 0.61 | 0.73 | 0.82 | 2.99 | 91490 | 5863 | 28 | 0 | 0 | 0 | 45742 | logfile |
✘ | 7QHM | 13976 | 2023-08-24 | 2021-12-13 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94633 | 5886 | 67 | 0 | 88 | 416 | 45103 | logfile |
✘ | 7QHo | 13977 | 2023-08-23 | 2021-12-13 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93446 | 5870 | 54 | 0 | 78 | 10 | 44952 | logfile |
✔ | 7WBV | 32407 | 2023-08-22 | 2021-12-17 | 4.1 | 4.41 | — | 4.0 | 0.004 | 0.62 | 0.0 | 0.04 | 18.74 | 0.00 | 1.842 | 12.31 | 0.00 | 5.9 | 94.1 | 0.1 | -0.61 | 0.80 | 0.73 | — | 4.0 | 0.004 | 0.60 | 0.0 | 0.04 | 19.08 | 0.00 | 1.848 | 12.34 | 0.00 | 7.3 | 92.6 | 0.1 | -0.68 | 1.15 | 0.80 | 0.72 | — | 92340 | 5125 | 34 | 329 | 11 | 0 | 44823 | logfile |
✔ | 7WBX | 32409 | 2023-08-22 | 2021-12-17 | 4.0 | 4.29 | — | 3.9 | 0.004 | 0.58 | 0.0 | 0.04 | 18.39 | 0.00 | 1.892 | 9.75 | 0.00 | 4.7 | 95.3 | 0.1 | -0.13 | 0.80 | 0.76 | — | 3.9 | 0.003 | 0.56 | 0.0 | 0.04 | 19.06 | 0.00 | 1.835 | 9.56 | 0.04 | 5.4 | 94.5 | 0.0 | 0.24 | 1.12 | 0.81 | 0.76 | — | 91763 | 5125 | 34 | 311 | 11 | 0 | 44620 | logfile |
✔ | 6TDV | 10468 | 2023-08-23 | 2019-11-10 | 2.8 | 3.00 | 2.85 | 3.0 | 0.009 | 1.08 | 0.0 | 0.04 | 16.68 | 0.00 | 2.093 | 3.34 | 0.00 | 2.6 | 97.4 | 0.0 | -1.24 | 0.66 | 0.82 | 4.29 | 3.0 | 0.003 | 0.63 | 0.0 | 0.04 | 17.08 | 0.00 | 1.961 | 7.68 | 0.94 | 1.8 | 98.2 | 0.0 | 1.92 | 0.78 | 0.64 | 0.84 | 4.01 | 92262 | 5464 | 62 | 0 | 61 | 0 | 44516 | logfile |
✔ | 7ooB | 13009 | 2023-08-22 | 2021-05-27 | 2.7 | 2.65 | 2.56 | 2.6 | 0.005 | 0.75 | 0.0 | 0.05 | 15.30 | 0.00 | 1.918 | 4.21 | 0.00 | 4.0 | 96.0 | 0.0 | -1.31 | 0.78 | 0.81 | 3.80 | 2.6 | 0.004 | 0.60 | 0.0 | 0.04 | 17.39 | 0.00 | 1.766 | 7.90 | 0.94 | 3.9 | 96.1 | 0.0 | -0.17 | 1.24 | 0.79 | 0.84 | 3.64 | 90745 | 5550 | 25 | 92 | 12 | 0 | 44484 | logfile |
✘ | 7RH7 | 24457 | 2023-08-23 | 2021-07-16 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93207 | 6072 | 44 | 0 | 64 | 0 | 44381 | logfile |
✘ | 7RH5 | 24455 | 2023-08-23 | 2021-07-16 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93342 | 6072 | 44 | 0 | 66 | 0 | 44380 | logfile |
✔ | 5JZH | 8185 | 2023-08-22 | 2016-05-16 | 3.9 | 4.02 | — | 4.0 | 0.015 | 2.15 | 0.0 | 0.08 | 10.55 | 0.02 | 1.650 | 4.16 | 0.00 | 9.4 | 87.9 | 2.7 | -1.57 | 0.81 | 0.81 | 2.71 | 4.0 | 0.003 | 0.63 | 0.0 | 0.04 | 14.24 | 0.00 | 1.878 | 8.40 | 0.12 | 7.7 | 92.3 | 0.0 | -1.12 | 0.97 | 0.78 | 0.84 | 1.97 | 90790 | 5936 | 14 | 0 | 0 | 0 | 44226 | logfile |
✔ | 8C5i | 16437 | 2023-08-21 | 2023-01-09 | 3.15 | 3.22 | — | 3.2 | 0.004 | 0.56 | 0.0 | 0.04 | 16.20 | 0.00 | 1.942 | 3.57 | 0.12 | 5.1 | 94.7 | 0.2 | -0.98 | 0.64 | 0.85 | 4.24 | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 16.56 | 0.00 | 1.952 | 4.28 | 0.08 | 4.9 | 94.7 | 0.4 | -0.87 | 0.27 | 0.63 | 0.85 | 4.00 | 89156 | 5706 | 18 | 0 | 0 | 0 | 43742 | logfile |
✘ | 7RH6 | 24456 | 2023-08-22 | 2021-07-16 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90627 | 5901 | 42 | 0 | 60 | 0 | 43188 | logfile |
✔ | 8B6J | 15868 | 2023-08-23 | 2022-09-27 | 2.8 | 3.12 | 2.93 | 3.2 | 0.004 | 0.54 | 0.0 | 0.04 | 14.48 | 0.00 | 1.951 | 5.28 | 0.67 | 2.0 | 98.0 | 0.0 | 1.22 | 0.53 | 0.62 | 0.70 | 3.2 | 0.003 | 0.53 | 0.0 | 0.04 | 16.79 | 0.00 | 1.940 | 11.18 | 1.64 | 3.5 | 96.5 | 0.0 | 0.51 | 1.17 | 0.60 | 0.79 | 3.06 | 89526 | 5313 | 38 | 0 | 175 | 0 | 42507 | logfile |
✔ | 8E48 | 27883 | 2023-08-13 | 2022-08-17 | 2.27 | 2.95 | 2.47 | 2.8 | 0.005 | 0.52 | 0.0 | 0.03 | 12.64 | 0.02 | 1.808 | 1.21 | 0.53 | 4.6 | 95.4 | 0.0 | 0.36 | 0.69 | 0.84 | 3.07 | 2.7 | 0.005 | 0.72 | 0.0 | 0.04 | 13.92 | 0.01 | 1.776 | 1.71 | 1.70 | 6.1 | 93.8 | 0.1 | -0.67 | 0.72 | 0.71 | 0.90 | 5.14 | 115959 | 1179 | 11 | 3016 | 1 | 0 | 41918 | logfile |
✔ | 8E47 | 27882 | 2023-08-13 | 2022-08-17 | 2.32 | 2.95 | 2.51 | 2.8 | 0.005 | 0.42 | 0.0 | 0.09 | 12.59 | 0.02 | 1.901 | 1.08 | 0.96 | 3.9 | 96.1 | 0.0 | 0.60 | 0.74 | 0.91 | 4.96 | 2.8 | 0.004 | 0.66 | 0.0 | 0.05 | 13.83 | 0.01 | 1.902 | 2.04 | 1.49 | 5.2 | 94.7 | 0.1 | -0.63 | 0.28 | 0.70 | 0.89 | 5.32 | 115917 | 1179 | 11 | 3016 | 1 | 0 | 41886 | logfile |
✔ | 8E49 | 27884 | 2023-08-13 | 2022-08-17 | 2.05 | 2.78 | 2.50 | 2.5 | 0.005 | 0.42 | 0.0 | 0.03 | 12.72 | 0.02 | 1.945 | 1.31 | 0.85 | 4.6 | 95.4 | 0.0 | 0.91 | 0.71 | 0.91 | 5.79 | 2.5 | 0.005 | 0.61 | 0.0 | 0.04 | 13.66 | 0.01 | 1.904 | 2.39 | 1.38 | 5.2 | 94.8 | 0.1 | 0.05 | 0.23 | 0.70 | 0.92 | 5.98 | 115871 | 1179 | 11 | 3016 | 1 | 0 | 41885 | logfile |