Table showing results for February 2023

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YY0	11001	2023-02-23	2020-05-04	3.23	3.34	3.07	3.3	0.006	0.68	0.0	0.04	15.27	0.00	1.847	8.18	0.00	8.4	91.6	0.0	-0.84	0.72	0.84	2.97	3.3	0.003	0.54	0.0	0.04	16.09	0.00	1.781	5.95	0.16	4.2	95.8	0.0	0.39	0.33	0.73	0.85	2.64	61162	3926	25	0	11	17	30826	logfile
✔	6Fo0	4286	2023-02-23	2018-02-05	4.1	4.16	2.43	4.1	0.012	0.96	0.0	0.05	8.97	0.01	2.040	5.54	0.00	10.2	89.8	0.1	-4.55	0.72	0.79	—	4.1	0.003	0.61	0.0	0.04	12.56	0.00	1.904	10.30	0.00	5.8	94.2	0.0	-1.21	2.42	0.74	0.81	—	61356	3910	24	0	8	0	30362	logfile
✔	7RFG	24441	2023-02-23	2021-07-14	2.6	2.42	—	2.4	0.013	2.03	27.0	0.11	18.66	0.02	2.518	1.16	1.84	4.2	95.6	0.2	-0.50	0.62	0.80	5.41	2.4	0.003	0.65	0.0	0.06	19.11	0.00	1.929	6.28	1.38	2.8	97.2	0.0	0.25	1.64	0.64	0.82	4.89	60824	3928	16	0	32	0	30240	logfile
✔	5FN1	3236	2023-02-23	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.005	0.87	0.0	0.04	16.79	0.01	1.856	24.08	1.08	13.3	85.7	1.0	-1.33	2.15	0.41	0.75	0.99	61308	3906	36	90	0	0	30078	logfile
✘	7RGM	24452	2023-02-23	2021-07-15	2.8	2.86	—	2.9	0.014	1.70	0.0	0.08	15.75	0.01	2.328	1.94	3.63	5.2	94.6	0.3	-1.77	0.62	0.86	3.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59928	3872	16	0	32	0	29736	logfile
✔	7L2Z	23146	2023-02-22	2020-12-17	3.4	3.78	—	3.7	0.002	0.50	1.0	0.05	12.49	0.00	1.866	2.68	0.63	3.6	96.4	0.0	-2.91	0.74	0.75	1.52	3.7	0.003	0.60	0.0	0.04	14.02	0.00	1.848	6.61	0.03	5.8	94.2	0.0	-1.22	0.79	0.77	0.82	2.22	59631	3866	6	0	0	0	29676	logfile
✔	7RGQ	24454	2023-02-23	2021-07-15	3.9	3.65	—	3.7	0.013	1.98	9.0	0.09	17.74	0.01	2.357	2.12	2.74	6.9	92.4	0.7	-1.98	0.56	0.81	3.07	3.7	0.004	0.65	0.0	0.04	17.65	0.00	1.968	11.43	0.32	5.9	94.1	0.0	-0.97	1.77	0.55	0.81	2.30	59832	3848	16	0	40	0	29544	logfile
✔	7RFE	24439	2023-02-22	2021-07-14	2.6	2.27	—	2.5	0.013	2.07	13.0	0.10	19.39	0.02	2.500	1.13	2.87	3.5	96.2	0.2	-0.73	0.60	0.78	5.31	2.5	0.004	0.66	0.0	0.04	18.23	0.00	1.877	7.03	1.31	3.2	96.8	0.0	0.82	0.77	0.63	0.82	4.32	58720	3800	16	0	32	0	29200	logfile
✔	6PMi	20394	2023-02-22	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	15.81	0.01	1.949	12.35	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.1	0.004	0.70	0.0	0.04	17.32	0.00	1.819	21.88	0.54	10.0	89.9	0.1	-2.32	1.00	0.86	0.77	0.35	57985	3453	10	110	4	0	28610	logfile
✔	6PMJ	20395	2023-02-22	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	11.04	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.003	0.71	0.0	0.04	17.51	0.00	1.817	21.36	0.34	8.4	91.4	0.1	-2.26	1.66	0.89	0.77	0.03	57984	3453	10	110	4	0	28609	logfile
✔	8ET3	28585	2023-02-22	2022-10-16	3.7	4.31	3.57	3.7	0.003	0.61	0.0	0.04	12.50	0.00	2.082	2.30	0.00	0.3	99.7	0.0	-0.04	0.86	0.78	2.35	3.7	0.003	0.51	0.0	0.04	14.14	0.00	1.961	6.52	0.16	2.9	97.1	0.0	1.24	0.69	0.86	0.80	2.18	56854	3639	22	0	6	0	28542	logfile
✔	6XZQ	10665	2023-02-22	2020-02-05	3.6	4.18	3.53	3.7	0.005	0.64	0.0	0.04	15.64	0.01	1.924	5.93	1.26	5.0	95.0	0.0	-2.44	0.89	0.79	1.95	3.8	0.003	0.57	0.0	0.04	15.83	0.00	1.951	8.55	0.10	4.5	95.5	0.0	-0.15	0.76	0.90	0.82	1.89	56888	3492	8	19	0	0	28480	logfile
✔	7M05	23609	2023-02-22	2021-03-10	2.39	2.66	2.49	2.6	0.013	0.89	0.0	0.06	14.64	0.01	2.064	3.66	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	2.6	0.004	0.63	0.0	0.05	16.24	0.00	2.046	3.05	1.19	3.6	96.3	0.1	0.16	1.27	0.79	0.84	4.23	57152	3636	12	0	4	0	28188	logfile
✔	6E9Y	9020	2023-02-21	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.005	0.58	0.0	0.03	11.10	0.00	2.001	10.39	0.00	1.7	98.3	0.0	1.61	1.51	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	6Yo0	10862	2023-02-22	2020-04-14	2.9	3.37	2.94	3.1	0.009	0.75	0.0	0.04	9.57	0.00	1.889	11.21	0.27	3.7	96.3	0.0	-0.60	0.84	0.87	3.83	3.1	0.004	0.57	0.0	0.04	13.62	0.00	1.300	8.27	0.64	4.4	95.6	0.0	1.08	0.80	0.84	0.89	3.23	55780	3598	17	0	10	0	28102	logfile
✔	7RJA	24482	2023-02-22	2021-07-20	3.0	3.57	—	3.5	0.006	0.65	0.0	0.04	13.44	0.00	1.839	9.52	0.07	4.1	95.9	0.0	0.19	0.65	0.78	3.99	3.5	0.003	0.56	0.0	0.04	15.38	0.00	1.940	9.11	1.07	3.7	96.3	0.0	0.97	1.13	0.64	0.79	3.52	57452	3812	24	0	12	0	28034	logfile
✔	8CXN	27061	2023-02-22	2022-05-22	2.9	3.69	2.99	3.3	0.002	0.47	3.0	0.05	11.31	0.00	1.974	5.44	0.06	3.5	96.4	0.1	0.27	0.78	0.71	1.63	3.4	0.003	0.53	3.0	0.04	12.80	0.00	1.864	9.70	0.59	5.7	94.3	0.1	-0.77	0.46	0.79	0.73	1.63	57131	3678	9	0	30	0	27987	logfile
✔	8CYA	27072	2023-02-22	2022-05-23	2.7	3.50	2.73	3.0	0.002	0.44	0.0	0.04	11.93	0.00	1.935	6.76	0.06	4.8	95.0	0.2	0.52	0.83	0.75	1.85	3.1	0.004	0.49	0.0	0.04	13.00	0.00	1.982	10.17	0.53	5.3	94.6	0.2	0.03	0.39	0.85	0.79	2.17	57833	3681	29	0	88	0	27935	logfile
✘	7RJE	24486	2023-02-22	2021-07-20	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57232	3818	24	0	10	0	27924	logfile
✔	8CXQ	27067	2023-02-22	2022-05-22	2.3	3.31	2.77	3.1	0.002	0.45	0.0	0.04	10.31	0.00	2.008	5.61	0.22	3.9	96.0	0.1	0.30	0.78	0.80	2.66	3.1	0.003	0.51	0.0	0.04	12.17	0.00	1.891	6.73	0.66	4.5	95.5	0.0	-0.06	0.39	0.73	0.75	2.47	56384	3666	6	0	0	0	27792	logfile

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