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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7MFM | 23817 | 2024-03-20 | 2021-04-10 | 2.42 | 3.06 | — | 2.9 | 0.018 | 0.82 | 0.0 | 0.30 | 17.92 | 0.00 | 1.938 | 5.24 | 2.10 | 5.1 | 94.8 | 0.1 | 1.25 | 0.64 | 0.84 | 3.33 | 2.9 | 0.004 | 0.78 | 1.0 | 0.06 | 17.70 | 0.00 | 1.749 | 6.91 | 1.78 | 5.2 | 94.7 | 0.1 | 0.89 | 0.35 | 0.61 | 0.83 | 3.41 | 100025 | 6406 | 14 | 0 | 10 | 0 | 49785 | logfile |
✔ | 8P94 | 17558 | 2024-03-20 | 2023-06-05 | 3.3 | 3.96 | 3.39 | 3.7 | 0.006 | 0.90 | 0.0 | 0.05 | 14.68 | 0.01 | 1.298 | 9.91 | 0.00 | 2.8 | 97.2 | 0.0 | -2.56 | 0.77 | 0.75 | 2.46 | 3.7 | 0.004 | 0.60 | 0.0 | 0.04 | 14.93 | 0.00 | 1.727 | 5.35 | 0.44 | 3.5 | 96.5 | 0.0 | 0.48 | 0.64 | 0.79 | 0.84 | 2.41 | 100110 | 6390 | 42 | 0 | 34 | 0 | 49452 | logfile |
✔ | 7LS5 | 23502 | 2024-03-20 | 2021-02-17 | 2.74 | 3.16 | 2.79 | 3.1 | 0.004 | 0.53 | 0.0 | 0.06 | 12.59 | 0.00 | 2.007 | 3.91 | 0.02 | 1.7 | 98.3 | 0.0 | 0.77 | 0.72 | 0.80 | 4.34 | 3.1 | 0.004 | 0.54 | 0.0 | 0.06 | 14.76 | 0.00 | 2.034 | 4.81 | 0.72 | 1.6 | 98.4 | 0.0 | 1.32 | 1.15 | 0.67 | 0.76 | 3.82 | 98042 | 6315 | 28 | 0 | 0 | 0 | 48895 | logfile |
✔ | 8E2K | 27841 | 2024-03-19 | 2022-08-15 | 3.21 | 3.74 | 3.62 | 3.3 | 0.004 | 0.61 | 0.0 | 0.04 | 15.39 | 0.01 | 1.972 | 6.69 | 0.83 | 2.3 | 97.7 | 0.0 | 1.10 | 0.70 | 0.67 | 1.38 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 15.58 | 0.00 | 1.886 | 9.98 | 1.16 | 3.7 | 96.3 | 0.0 | 0.97 | 1.43 | 0.71 | 0.72 | 1.29 | 96785 | 6160 | 5 | 0 | 0 | 0 | 48882 | logfile |
✔ | 7TEo | 25848 | 2024-03-20 | 2022-01-05 | 2.97 | 3.22 | — | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 12.70 | 0.00 | 1.883 | 4.54 | 0.00 | 1.6 | 98.4 | 0.0 | 0.93 | 0.71 | 0.79 | 3.19 | 3.2 | 0.005 | 0.57 | 0.0 | 0.04 | 15.23 | 0.00 | 1.936 | 6.61 | 1.44 | 2.7 | 97.3 | 0.0 | 0.82 | 1.18 | 0.68 | 0.79 | 2.98 | 97522 | 6288 | 30 | 0 | 0 | 0 | 48612 | logfile |
✘ | 7UNC | 26620 | 2024-03-10 | 2022-04-10 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105726 | 7924 | 38 | 311 | 9 | 0 | 48096 | logfile |
✔ | 8F7K | 28906 | 2024-03-19 | 2022-11-18 | 1.94 | 2.95 | 2.02 | 2.5 | 0.006 | 0.68 | 0.0 | 0.05 | 12.22 | 0.02 | 2.237 | 3.21 | 1.39 | 1.4 | 98.6 | 0.0 | 1.42 | 0.81 | 0.78 | 5.11 | 2.5 | 0.004 | 0.52 | 0.0 | 0.04 | 14.29 | 0.00 | 2.137 | 2.97 | 0.54 | 2.4 | 97.6 | 0.0 | 1.72 | 0.52 | 0.79 | 0.90 | 4.74 | 95242 | 6048 | 42 | 0 | 14 | 0 | 47978 | logfile |
✔ | 7UXC | 26857 | 2024-03-19 | 2022-05-05 | 3.2 | 3.49 | 3.37 | 3.4 | 0.005 | 0.89 | 0.0 | 0.11 | 15.05 | 0.01 | 1.971 | 1.67 | 0.00 | 4.7 | 95.2 | 0.1 | -1.42 | 0.78 | 0.76 | 2.02 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 15.54 | 0.00 | 1.817 | 7.39 | 0.65 | 4.2 | 95.7 | 0.0 | 0.63 | 1.17 | 0.80 | 0.81 | 2.21 | 95147 | 5959 | 23 | 2 | 5 | 0 | 47565 | logfile |
✔ | 8F6A | 28878 | 2024-03-19 | 2022-11-16 | 2.06 | 3.05 | 2.14 | 2.7 | 0.004 | 0.69 | 0.0 | 0.05 | 17.55 | 0.01 | 2.320 | 4.08 | 3.21 | 3.1 | 96.9 | 0.0 | 1.20 | 0.80 | 0.76 | 4.28 | 2.7 | 0.005 | 0.63 | 0.0 | 0.04 | 16.28 | 0.00 | 1.429 | 2.59 | 0.99 | 4.1 | 95.9 | 0.0 | 1.45 | 0.85 | 0.81 | 0.91 | 4.64 | 93058 | 5950 | 28 | 0 | 0 | 0 | 47110 | logfile |
✔ | 8B3D | 15825 | 2024-03-19 | 2022-09-16 | 2.6 | 2.67 | 2.52 | 2.7 | 0.010 | 1.66 | 40.0 | 0.10 | 16.23 | 0.01 | 1.418 | 6.55 | 0.08 | 4.5 | 95.5 | 0.0 | -1.14 | 0.69 | 0.76 | 3.46 | 2.7 | 0.003 | 0.65 | 0.0 | 0.05 | 17.71 | 0.00 | 1.815 | 9.56 | 1.01 | 4.0 | 96.0 | 0.0 | 0.18 | 0.62 | 0.64 | 0.80 | 3.48 | 95796 | 5876 | 29 | 102 | 14 | 0 | 46942 | logfile |
✔ | 8E2i | 27837 | 2024-03-19 | 2022-08-15 | 3.04 | 3.45 | 3.37 | 3.1 | 0.004 | 0.60 | 0.0 | 0.04 | 15.47 | 0.00 | 1.925 | 7.78 | 0.83 | 1.8 | 98.2 | 0.0 | 1.23 | 0.64 | 0.64 | 1.06 | 3.2 | 0.005 | 0.74 | 0.0 | 0.04 | 16.14 | 0.00 | 1.853 | 16.90 | 2.42 | 5.2 | 94.8 | 0.0 | 0.17 | 0.86 | 0.66 | 0.67 | 1.02 | 92676 | 5836 | 6 | 0 | 114 | 0 | 46502 | logfile |
✔ | 7oo3 | 13004 | 2024-03-20 | 2021-05-26 | 2.8 | 2.93 | 2.82 | 2.9 | 0.010 | 0.90 | 0.0 | 0.06 | 15.29 | 0.01 | 1.919 | 4.52 | 0.00 | 3.8 | 96.2 | 0.0 | -1.32 | 0.78 | 0.81 | 4.02 | 2.9 | 0.005 | 0.58 | 0.0 | 0.04 | 16.91 | 0.00 | 1.878 | 8.35 | 1.02 | 4.0 | 96.0 | 0.0 | 0.02 | 1.56 | 0.74 | 0.80 | 3.76 | 95846 | 6020 | 26 | 92 | 44 | 0 | 46456 | logfile |
✔ | 7TEJ | 25847 | 2024-03-19 | 2022-01-05 | 2.74 | 2.95 | — | 3.0 | 0.004 | 0.58 | 0.0 | 0.04 | 12.22 | 0.00 | 1.920 | 4.81 | 0.00 | 1.4 | 98.6 | 0.0 | 1.11 | 0.71 | 0.78 | 3.62 | 3.0 | 0.003 | 0.51 | 0.0 | 0.04 | 14.97 | 0.00 | 1.999 | 4.67 | 1.03 | 1.5 | 98.5 | 0.0 | 1.57 | 0.59 | 0.73 | 0.82 | 2.98 | 91490 | 5863 | 28 | 0 | 0 | 0 | 45742 | logfile |
✔ | 8B3F | 15826 | 2024-03-19 | 2022-09-16 | 3.1 | 2.81 | 2.76 | 2.8 | 0.011 | 1.69 | 40.0 | 0.10 | 16.15 | 0.01 | 0.542 | 7.35 | 0.08 | 4.4 | 95.6 | 0.0 | -1.26 | 0.68 | 0.70 | 2.51 | 2.8 | 0.004 | 0.66 | 0.0 | 0.05 | 17.25 | 0.00 | 1.876 | 9.65 | 0.95 | 3.6 | 96.4 | 0.0 | -0.01 | 1.96 | 0.72 | 0.75 | 3.04 | 92036 | 5626 | 26 | 102 | 10 | 0 | 45119 | logfile |
✘ | 7QHM | 13976 | 2024-03-20 | 2021-12-13 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94633 | 5886 | 67 | 0 | 88 | 416 | 45103 | logfile |
✘ | 7QHo | 13977 | 2024-03-19 | 2021-12-13 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93446 | 5870 | 54 | 0 | 78 | 10 | 44952 | logfile |
✔ | 7WBV | 32407 | 2024-03-19 | 2021-12-17 | 4.1 | 4.41 | — | 4.0 | 0.004 | 0.62 | 0.0 | 0.04 | 18.95 | 0.00 | 1.842 | 12.31 | 0.00 | 5.9 | 94.1 | 0.1 | -0.61 | 0.80 | 0.73 | — | 4.0 | 0.004 | 0.63 | 0.0 | 0.04 | 19.33 | 0.00 | 1.847 | 14.41 | 0.00 | 8.6 | 91.3 | 0.1 | -1.22 | 0.48 | 0.80 | 0.72 | — | 92340 | 5125 | 34 | 329 | 11 | 0 | 44823 | logfile |
✔ | 7WBX | 32409 | 2024-03-19 | 2021-12-17 | 4.0 | 4.29 | — | 3.9 | 0.004 | 0.58 | 0.0 | 0.04 | 18.62 | 0.00 | 1.892 | 9.75 | 0.00 | 4.7 | 95.3 | 0.1 | -0.13 | 0.80 | 0.76 | — | 3.9 | 0.005 | 0.60 | 0.0 | 0.04 | 19.29 | 0.00 | 1.773 | 11.56 | 0.29 | 6.7 | 93.3 | 0.0 | -0.17 | 1.12 | 0.81 | 0.77 | — | 91763 | 5125 | 34 | 311 | 11 | 0 | 44620 | logfile |
✔ | 6TDV | 10468 | 2024-03-19 | 2019-11-10 | 2.8 | 3.00 | 2.85 | 3.0 | 0.009 | 1.08 | 0.0 | 0.04 | 17.84 | 0.00 | 2.093 | 3.34 | 0.00 | 2.6 | 97.4 | 0.0 | -1.24 | 0.66 | 0.82 | 4.29 | 3.0 | 0.004 | 0.66 | 0.0 | 0.04 | 17.70 | 0.00 | 1.972 | 7.86 | 1.04 | 2.3 | 97.7 | 0.0 | 1.74 | 1.30 | 0.64 | 0.84 | 4.05 | 92262 | 5464 | 62 | 0 | 61 | 0 | 44516 | logfile |
✔ | 7ooB | 13009 | 2024-03-19 | 2021-05-27 | 2.7 | 2.65 | 2.56 | 2.6 | 0.005 | 0.75 | 0.0 | 0.05 | 15.48 | 0.00 | 1.918 | 4.21 | 0.00 | 4.0 | 96.0 | 0.0 | -1.31 | 0.78 | 0.81 | 3.80 | 2.6 | 0.003 | 0.57 | 0.0 | 0.04 | 17.47 | 0.00 | 1.814 | 7.85 | 1.04 | 3.8 | 96.2 | 0.0 | -0.08 | 1.24 | 0.78 | 0.84 | 3.57 | 90745 | 5550 | 25 | 92 | 12 | 0 | 44484 | logfile |