Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DY7	27777	2023-04-21	2022-08-03	3.18	3.44	3.26	3.4	0.003	0.65	0.0	0.04	17.36	0.00	1.507	3.64	0.00	4.3	95.7	0.0	0.22	0.71	0.81	2.62	3.4	0.004	0.64	0.0	0.04	18.30	0.00	1.936	4.98	0.10	5.1	94.9	0.0	0.22	0.29	0.73	0.84	2.40	61085	3612	14	149	5	0	29915	logfile
✘	7RGM	24452	2023-04-21	2021-07-15	2.8	2.86	—	2.9	0.014	1.70	0.0	0.08	15.75	0.01	2.328	1.94	3.63	5.2	94.6	0.3	-1.77	0.62	0.86	3.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59928	3872	16	0	32	0	29736	logfile
✔	8B0F	15779	2023-04-21	2022-09-07	3.0	3.33	3.08	3.1	0.004	0.75	0.0	0.05	14.65	0.01	2.067	4.43	1.40	7.8	92.2	0.0	-1.39	0.81	0.81	3.23	3.1	0.004	0.65	0.0	0.04	15.05	0.00	1.918	6.32	0.91	5.0	95.0	0.0	-0.12	1.37	0.81	0.82	2.96	60654	3910	12	0	9	0	29718	logfile
✔	7L2Z	23146	2023-04-21	2020-12-17	3.4	3.78	—	3.7	0.002	0.50	1.0	0.05	12.49	0.00	1.866	2.68	0.63	3.6	96.4	0.0	-2.91	0.74	0.75	1.52	3.7	0.003	0.60	0.0	0.04	14.02	0.00	1.848	6.61	0.03	5.8	94.2	0.0	-1.22	0.79	0.77	0.82	2.22	59631	3866	6	0	0	0	29676	logfile
✔	7RGQ	24454	2023-04-21	2021-07-15	3.9	3.65	—	3.7	0.013	1.98	9.0	0.09	17.74	0.01	2.357	2.12	2.74	6.9	92.4	0.7	-1.98	0.56	0.81	3.07	3.7	0.004	0.65	0.0	0.04	17.65	0.00	1.968	11.43	0.32	5.9	94.1	0.0	-0.97	1.77	0.55	0.81	2.30	59832	3848	16	0	40	0	29544	logfile
✔	7RFE	24439	2023-04-21	2021-07-14	2.6	2.27	—	2.5	0.013	2.07	13.0	0.10	19.39	0.02	2.500	1.13	2.87	3.5	96.2	0.2	-0.73	0.60	0.78	5.31	2.5	0.004	0.66	0.0	0.04	18.23	0.00	1.877	7.03	1.31	3.2	96.8	0.0	0.82	0.77	0.63	0.82	4.32	58720	3800	16	0	32	0	29200	logfile
✔	8FMA	29290	2023-04-27	2022-12-22	3.1	3.42	3.39	3.4	0.002	0.48	0.0	0.04	11.37	0.00	1.426	7.73	0.00	2.7	97.3	0.0	1.06	0.53	0.72	2.38	3.4	0.002	0.52	0.0	0.04	13.95	0.00	2.056	6.66	0.18	2.7	97.3	0.0	2.05	1.15	0.60	0.80	2.36	72974	7227	22	0	0	0	28633	logfile
✔	6PMi	20394	2023-04-21	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	15.81	0.01	1.949	12.35	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.1	0.004	0.70	0.0	0.04	17.32	0.00	1.819	21.88	0.54	10.0	89.9	0.1	-2.32	1.00	0.86	0.77	0.35	57985	3453	10	110	4	0	28610	logfile
✔	6PMJ	20395	2023-04-21	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	11.04	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.003	0.71	0.0	0.04	17.51	0.00	1.817	21.36	0.34	8.4	91.4	0.1	-2.26	1.66	0.89	0.77	0.03	57984	3453	10	110	4	0	28609	logfile
✔	8ET3	28585	2023-04-20	2022-10-16	3.7	4.31	3.57	3.7	0.003	0.61	0.0	0.04	12.50	0.00	2.082	2.30	0.00	0.3	99.7	0.0	-0.04	0.86	0.78	2.35	3.7	0.003	0.51	0.0	0.04	14.14	0.00	1.961	6.52	0.16	2.9	97.1	0.0	1.24	0.69	0.86	0.80	2.18	56854	3639	22	0	6	0	28542	logfile
✔	6XZQ	10665	2023-04-20	2020-02-05	3.6	4.18	3.53	3.7	0.005	0.64	0.0	0.04	15.64	0.01	1.924	5.93	1.26	5.0	95.0	0.0	-2.44	0.89	0.79	1.95	3.8	0.003	0.57	0.0	0.04	15.83	0.00	1.951	8.55	0.10	4.5	95.5	0.0	-0.15	0.76	0.90	0.82	1.89	56888	3492	8	19	0	0	28480	logfile
✔	7M05	23609	2023-04-20	2021-03-10	2.39	2.66	2.49	2.6	0.013	0.89	0.0	0.06	14.64	0.01	2.064	3.66	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	2.6	0.004	0.63	0.0	0.05	16.24	0.00	2.046	3.05	1.19	3.6	96.3	0.1	0.16	1.27	0.79	0.84	4.23	57152	3636	12	0	4	0	28188	logfile
✔	6Yo0	10862	2023-04-20	2020-04-14	2.9	3.37	2.94	3.1	0.009	0.75	0.0	0.04	9.57	0.00	1.889	11.21	0.27	3.7	96.3	0.0	-0.60	0.84	0.87	3.83	3.1	0.004	0.57	0.0	0.04	13.62	0.00	1.300	8.27	0.64	4.4	95.6	0.0	1.08	0.80	0.84	0.89	3.23	55780	3598	17	0	10	0	28102	logfile
✔	7RJA	24482	2023-04-21	2021-07-20	3.0	3.57	—	3.5	0.006	0.65	0.0	0.04	13.44	0.00	1.839	9.54	0.07	4.1	95.9	0.0	0.19	0.65	0.78	3.99	3.5	0.003	0.56	0.0	0.04	15.38	0.00	1.940	9.14	1.07	3.7	96.3	0.0	0.97	1.13	0.64	0.79	3.52	57452	3812	24	0	12	0	28034	logfile
✘	8CXN	27061	2023-04-21	2022-05-22	2.9	3.69	2.99	3.3	0.002	0.50	3.0	0.05	11.36	0.00	1.974	5.44	0.06	3.5	96.4	0.1	0.27	0.78	0.71	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57131	3678	9	0	30	0	27987	logfile
✔	8CYA	27072	2023-04-21	2022-05-23	2.7	3.50	2.73	3.0	0.003	0.56	0.0	0.05	11.67	0.00	1.935	6.76	0.06	4.8	95.0	0.2	0.52	0.83	0.75	1.85	3.1	0.005	0.55	0.0	0.04	12.83	0.00	2.004	10.58	0.47	5.7	94.2	0.1	-0.07	0.40	0.85	0.80	2.12	57833	3681	29	0	88	0	27935	logfile
✘	7RJE	24486	2023-04-21	2021-07-20	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57232	3818	24	0	10	0	27924	logfile
✔	8CXQ	27067	2023-04-20	2022-05-22	2.3	3.31	2.77	3.1	0.002	0.46	0.0	0.04	10.31	0.00	2.008	5.61	0.22	3.9	96.0	0.1	0.30	0.78	0.80	2.66	3.1	0.004	0.53	1.0	0.04	12.19	0.00	1.888	6.75	0.69	4.8	95.1	0.0	-0.13	0.39	0.73	0.76	2.52	56384	3666	6	0	0	0	27792	logfile
✔	7NPS	12518	2023-04-20	2021-02-28	3.81	3.93	3.82	3.9	0.010	1.15	6.0	0.08	11.02	0.01	2.182	1.23	0.00	2.5	97.5	0.0	-1.44	0.82	0.82	2.59	3.9	0.002	0.59	0.0	0.05	12.84	0.00	1.895	2.91	0.00	1.8	98.2	0.0	-0.02	0.68	0.83	0.83	2.26	55350	3732	9	0	0	0	27681	logfile
✔	8CY6	27068	2023-04-20	2022-05-23	3.2	3.98	3.39	3.6	0.003	0.50	0.0	0.04	10.43	0.00	2.024	7.15	0.16	3.0	96.8	0.2	0.26	0.82	0.78	2.02	3.6	0.004	0.51	0.0	0.04	11.67	0.00	2.016	7.45	0.10	4.5	95.5	0.0	-0.15	0.39	0.83	0.80	2.07	56077	3666	6	0	0	0	27658	logfile

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