Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6KQK	0753	2022-12-12	2019-08-18	2.17	3.14	—	2.8	0.018	1.17	12.0	0.06	14.73	0.00	1.876	11.30	0.00	7.4	92.6	0.0	-4.38	0.82	0.84	4.45	2.8	0.003	0.73	2.0	0.12	15.48	0.00	1.779	9.80	0.53	4.0	96.0	0.0	0.22	0.79	0.82	0.86	4.19	63373	3936	24	0	48	0	31225	logfile
✔	6KQ8	0751	2022-12-12	2019-08-16	3.0	4.05	—	3.7	0.004	0.68	3.0	0.13	12.41	0.00	2.049	6.27	0.00	4.3	95.7	0.0	-4.72	0.87	0.86	3.55	3.7	0.004	0.74	2.0	0.13	13.96	0.00	2.056	7.67	0.31	4.2	95.8	0.0	0.29	1.38	0.87	0.86	3.88	62197	3936	24	0	12	0	31225	logfile
✔	6KoU	0740	2022-12-12	2019-08-13	2.43	3.57	—	3.0	0.004	0.67	1.0	0.13	11.88	0.00	2.006	4.07	0.00	3.0	97.0	0.0	-4.12	0.85	0.88	4.03	3.1	0.004	0.74	2.0	0.13	13.97	0.00	2.071	6.52	0.28	4.0	96.0	0.0	0.82	1.07	0.85	0.89	3.83	62209	3936	24	0	24	0	31225	logfile
✔	6KQ4	0750	2022-12-12	2019-08-16	2.3	3.29	—	3.0	0.007	0.65	0.0	0.06	13.31	0.00	2.167	3.58	0.37	4.3	95.7	0.0	-3.29	0.85	0.87	4.30	2.9	0.005	0.72	1.0	0.13	15.65	0.00	1.988	4.00	0.50	3.7	96.3	0.0	1.31	0.78	0.84	0.89	4.25	62206	3936	24	0	24	0	31222	logfile
✔	6KPH	0746	2022-12-12	2019-08-15	2.41	3.45	—	3.2	0.014	1.03	0.0	0.15	13.22	0.00	1.838	8.27	0.00	8.5	91.5	0.0	-4.25	0.81	0.85	4.19	3.2	0.005	0.76	0.0	0.15	15.00	0.00	1.731	8.05	1.12	4.2	95.8	0.0	-0.15	0.81	0.80	0.86	4.41	62832	3936	24	0	48	0	31212	logfile
✔	6KPE	0743	2022-12-12	2019-08-15	2.83	4.04	—	3.7	0.009	0.82	0.0	0.14	13.07	0.00	2.040	13.53	0.00	10.4	89.6	0.0	-5.24	0.83	0.84	3.18	3.5	0.004	0.83	0.0	0.16	15.55	0.00	2.043	10.01	1.34	6.0	94.0	0.0	-0.31	1.70	0.83	0.85	3.26	62184	3936	24	0	12	0	31212	logfile
✔	7KQB	22993	2022-12-12	2020-11-14	2.42	3.64	2.56	2.6	0.012	1.79	14.0	0.10	13.73	0.01	2.506	0.50	1.23	5.3	94.4	0.2	-1.06	0.79	0.62	3.08	2.6	0.004	0.60	0.0	0.04	14.05	0.00	2.016	5.29	0.64	5.0	95.0	0.0	-0.43	0.56	0.89	0.85	2.64	63309	4105	10	0	23	0	31094	logfile
✔	6YY0	11001	2022-12-12	2020-05-04	3.23	3.34	3.07	3.3	0.006	0.68	0.0	0.04	15.27	0.00	1.847	8.22	0.00	8.4	91.6	0.0	-0.84	0.72	0.84	2.97	3.3	0.003	0.53	0.0	0.04	16.03	0.00	1.772	5.95	0.22	4.2	95.8	0.0	0.47	0.35	0.73	0.85	2.69	61162	3926	25	0	11	17	30826	logfile
✔	6Fo0	4286	2022-12-12	2018-02-05	4.1	4.16	2.43	4.1	0.012	0.96	0.0	0.05	8.97	0.01	2.040	5.74	0.00	10.2	89.8	0.1	-4.55	0.72	0.79	—	4.1	0.003	0.61	0.0	0.04	12.58	0.00	1.917	10.46	0.00	6.1	93.9	0.0	-1.31	2.42	0.74	0.81	—	61356	3910	24	0	8	0	30362	logfile
✔	7RFG	24441	2022-12-12	2021-07-14	2.6	2.42	—	2.4	0.013	2.03	27.0	0.11	18.66	0.02	2.518	1.42	1.84	4.2	95.6	0.2	-0.50	0.62	0.80	5.41	2.4	0.003	0.65	0.0	0.06	19.31	0.00	1.900	6.41	1.28	3.0	97.0	0.0	0.16	1.64	0.64	0.83	4.82	60824	3928	16	0	32	0	30240	logfile
✘	7RGM	24452	2022-12-19	2021-07-15	2.8	2.86	—	2.9	0.014	1.70	0.0	0.08	15.75	0.01	2.328	2.22	3.63	5.2	94.6	0.3	-1.77	0.62	0.86	3.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59928	3872	16	0	32	0	29736	logfile
✔	7L2Z	23146	2022-12-12	2020-12-17	3.4	3.78	—	3.7	0.002	0.50	1.0	0.05	12.49	0.00	1.866	2.70	0.63	3.6	96.4	0.0	-2.91	0.74	0.75	1.52	3.7	0.003	0.59	0.0	0.04	13.98	0.00	1.851	6.61	0.09	6.0	94.0	0.0	-1.13	0.78	0.77	0.82	2.18	59631	3866	6	0	0	0	29676	logfile
✔	7RGQ	24454	2022-12-12	2021-07-15	3.9	3.65	—	3.7	0.013	1.98	9.0	0.09	17.74	0.01	2.357	2.34	2.74	6.9	92.4	0.7	-1.98	0.56	0.81	3.07	3.7	0.004	0.66	0.0	0.04	17.64	0.00	1.954	12.14	0.29	6.6	93.4	0.0	-1.22	1.77	0.55	0.81	2.30	59832	3848	16	0	40	0	29544	logfile
✔	7RFE	24439	2022-12-12	2021-07-14	2.6	2.27	—	2.5	0.013	2.07	13.0	0.10	19.39	0.02	2.500	1.30	2.87	3.5	96.2	0.2	-0.73	0.60	0.78	5.31	2.5	0.005	0.68	0.0	0.04	18.45	0.00	1.873	7.08	1.31	3.2	96.8	0.0	0.73	0.77	0.63	0.82	4.36	58720	3800	16	0	32	0	29200	logfile
✔	6PMi	20394	2022-12-12	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	15.81	0.01	1.949	12.38	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.1	0.004	0.70	0.0	0.04	17.35	0.00	1.817	21.64	0.41	9.6	90.3	0.1	-2.29	1.36	0.86	0.77	0.35	57985	3453	10	110	4	0	28610	logfile
✔	6PMJ	20395	2022-12-12	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	11.05	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.003	0.70	0.0	0.04	17.49	0.00	1.825	20.54	0.31	8.2	91.6	0.1	-2.11	1.65	0.89	0.77	0.28	57984	3453	10	110	4	0	28609	logfile
✔	6XZQ	10665	2022-12-12	2020-02-05	3.6	4.18	3.53	3.7	0.005	0.64	0.0	0.04	15.64	0.01	1.924	5.97	1.26	5.0	95.0	0.0	-2.44	0.89	0.79	1.95	3.8	0.004	0.60	0.0	0.04	15.91	0.00	1.901	9.41	0.23	5.4	94.6	0.0	-0.43	0.78	0.90	0.82	1.87	56888	3492	8	19	0	0	28480	logfile
✔	7M05	23609	2022-12-12	2021-03-10	2.39	2.66	2.49	2.6	0.013	1.00	0.0	0.06	14.78	0.01	2.064	3.94	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	2.6	0.003	0.59	0.0	0.05	16.31	0.00	2.054	3.50	1.00	3.1	96.8	0.1	0.36	1.28	0.79	0.84	3.90	57152	3636	12	0	4	0	28188	logfile
✔	6E9Y	9020	2022-12-11	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.003	0.53	0.0	0.03	11.06	0.00	2.036	9.37	0.00	1.4	98.6	0.0	2.12	1.50	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	6Yo0	10862	2022-12-11	2020-04-14	2.9	3.37	2.94	3.1	0.009	0.75	0.0	0.04	9.57	0.00	1.889	11.26	0.27	3.7	96.3	0.0	-0.60	0.84	0.87	3.83	3.1	0.004	0.57	0.0	0.04	13.58	0.00	1.769	8.27	0.87	4.5	95.5	0.0	1.11	0.80	0.84	0.89	3.18	55780	3598	17	0	10	0	28102	logfile

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