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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7RH7 | 24457 | 2024-03-19 | 2021-07-16 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93207 | 6072 | 44 | 0 | 64 | 0 | 44381 | logfile |
✘ | 7RH5 | 24455 | 2024-03-19 | 2021-07-16 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93342 | 6072 | 44 | 0 | 66 | 0 | 44380 | logfile |
✔ | 5JZH | 8185 | 2024-03-19 | 2016-05-16 | 3.9 | 4.02 | — | 4.0 | 0.015 | 2.15 | 0.0 | 0.08 | 10.55 | 0.02 | 1.650 | 4.16 | 0.00 | 9.4 | 87.9 | 2.7 | -1.57 | 0.81 | 0.81 | 2.71 | 4.0 | 0.004 | 0.65 | 0.0 | 0.05 | 14.38 | 0.01 | 1.835 | 8.65 | 2.05 | 8.5 | 91.5 | 0.0 | -1.33 | 0.93 | 0.78 | 0.84 | 1.90 | 90790 | 5936 | 14 | 0 | 0 | 0 | 44226 | logfile |
✔ | 8C5i | 16437 | 2024-03-18 | 2023-01-09 | 3.15 | 3.22 | — | 3.2 | 0.004 | 0.56 | 0.0 | 0.04 | 16.20 | 0.00 | 1.942 | 3.57 | 0.12 | 5.1 | 94.7 | 0.2 | -0.98 | 0.64 | 0.85 | 4.24 | 3.2 | 0.004 | 0.55 | 0.0 | 0.04 | 16.62 | 0.00 | 1.947 | 4.38 | 1.07 | 4.9 | 94.7 | 0.4 | -0.82 | 0.26 | 0.64 | 0.85 | 3.95 | 89156 | 5706 | 18 | 0 | 0 | 0 | 43742 | logfile |
✘ | 7RH6 | 24456 | 2024-03-19 | 2021-07-16 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90627 | 5901 | 42 | 0 | 60 | 0 | 43188 | logfile |
✔ | 8B6J | 15868 | 2024-03-19 | 2022-09-27 | 2.8 | 3.12 | 2.93 | 3.2 | 0.004 | 0.54 | 0.0 | 0.04 | 15.55 | 0.00 | 1.951 | 5.28 | 0.67 | 2.0 | 98.0 | 0.0 | 1.22 | 0.53 | 0.62 | 0.70 | 3.1 | 0.005 | 0.65 | 0.0 | 0.04 | 17.33 | 0.00 | 1.966 | 12.40 | 1.87 | 4.2 | 95.8 | 0.0 | 0.19 | 1.29 | 0.58 | 0.78 | 3.09 | 89526 | 5313 | 38 | 0 | 175 | 0 | 42507 | logfile |
✔ | 8oDN | 16810 | 2024-03-18 | 2023-03-09 | 2.7 | 2.42 | 2.69 | 2.9 | 0.003 | 0.62 | 0.0 | 0.08 | 12.94 | 0.00 | 2.246 | 8.62 | 0.58 | 2.5 | 97.5 | 0.0 | -0.61 | 0.63 | 0.69 | 2.68 | 2.8 | 0.003 | 0.69 | 0.0 | 0.09 | 15.33 | 0.00 | 2.105 | 8.63 | 1.64 | 3.8 | 96.2 | 0.0 | -0.14 | 2.63 | 0.67 | 0.76 | 2.68 | 85033 | 5577 | 26 | 0 | 0 | 0 | 42445 | logfile |
✔ | 8E48 | 27883 | 2024-03-12 | 2022-08-17 | 2.27 | 2.95 | 2.47 | 2.8 | 0.005 | 0.51 | 0.0 | 0.03 | 22.76 | 0.02 | 1.808 | 1.21 | 0.53 | 4.6 | 95.4 | 0.0 | 0.36 | 0.69 | 0.84 | 3.07 | 2.7 | 0.005 | 0.72 | 0.0 | 0.04 | 22.53 | 0.01 | 1.776 | 1.69 | 2.34 | 6.4 | 93.6 | 0.1 | -0.60 | 0.69 | 0.71 | 0.90 | 5.17 | 115959 | 1179 | 11 | 3016 | 1 | 0 | 41918 | logfile |
✔ | 8E47 | 27882 | 2024-03-13 | 2022-08-17 | 2.32 | 2.95 | 2.51 | 2.8 | 0.005 | 0.41 | 0.0 | 0.09 | 22.78 | 0.02 | 1.901 | 1.08 | 0.96 | 3.9 | 96.1 | 0.0 | 0.60 | 0.74 | 0.91 | 4.96 | 2.8 | 0.004 | 0.65 | 0.0 | 0.05 | 22.58 | 0.01 | 1.895 | 1.94 | 1.38 | 5.2 | 94.7 | 0.1 | -0.65 | 0.34 | 0.70 | 0.89 | 5.32 | 115917 | 1179 | 11 | 3016 | 1 | 0 | 41886 | logfile |
✔ | 8E49 | 27884 | 2024-03-12 | 2022-08-17 | 2.05 | 2.78 | 2.50 | 2.5 | 0.005 | 0.41 | 0.0 | 0.03 | 23.22 | 0.02 | 1.945 | 1.31 | 0.85 | 4.6 | 95.4 | 0.0 | 0.91 | 0.71 | 0.91 | 5.79 | 2.6 | 0.006 | 0.61 | 0.0 | 0.04 | 23.03 | 0.01 | 1.935 | 2.30 | 1.59 | 5.0 | 94.9 | 0.1 | 0.11 | 0.22 | 0.70 | 0.92 | 5.95 | 115871 | 1179 | 11 | 3016 | 1 | 0 | 41885 | logfile |
✔ | 8E44 | 27879 | 2024-03-12 | 2022-08-17 | 2.53 | 3.06 | 2.75 | 2.9 | 0.005 | 0.40 | 0.0 | 0.04 | 23.26 | 0.02 | 1.946 | 2.19 | 0.11 | 4.6 | 95.4 | 0.0 | 0.86 | 0.73 | 0.91 | 4.75 | 2.9 | 0.006 | 0.61 | 0.0 | 0.04 | 23.19 | 0.01 | 1.910 | 3.63 | 1.59 | 5.0 | 94.9 | 0.1 | -0.04 | 0.87 | 0.73 | 0.91 | 5.15 | 115856 | 1179 | 11 | 3016 | 1 | 0 | 41883 | logfile |
✔ | 8E43 | 27878 | 2024-03-13 | 2022-08-17 | 2.09 | 2.88 | 2.49 | 2.6 | 0.006 | 0.57 | 0.0 | 0.03 | 23.48 | 0.02 | 1.945 | 2.00 | 1.06 | 4.9 | 94.8 | 0.3 | -2.82 | 0.73 | 0.90 | 5.55 | 2.6 | 0.006 | 0.61 | 0.0 | 0.04 | 23.27 | 0.01 | 1.931 | 3.36 | 1.70 | 5.5 | 94.1 | 0.4 | -0.27 | 0.38 | 0.72 | 0.91 | 5.09 | 115905 | 1179 | 11 | 3015 | 1 | 0 | 41874 | logfile |
✔ | 8E35 | 27857 | 2024-03-12 | 2022-08-16 | 2.27 | 2.92 | 2.48 | 2.8 | 0.009 | 0.45 | 0.0 | 0.03 | 22.65 | 0.02 | 2.028 | 1.04 | 0.00 | 4.6 | 95.4 | 0.0 | 0.37 | 0.75 | 0.86 | 3.34 | 2.7 | 0.005 | 0.67 | 0.0 | 0.04 | 22.57 | 0.01 | 1.918 | 2.10 | 0.42 | 5.0 | 94.9 | 0.1 | -0.88 | 1.10 | 0.72 | 0.91 | 5.76 | 115840 | 1179 | 11 | 3016 | 1 | 1 | 41853 | logfile |
✔ | 8E32 | 27854 | 2024-03-13 | 2022-08-16 | 2.35 | 2.96 | 2.64 | 2.8 | 0.006 | 0.51 | 0.0 | 0.03 | 23.04 | 0.02 | 2.005 | 1.20 | 0.74 | 4.6 | 95.4 | 0.0 | 0.03 | 0.74 | 0.91 | 5.35 | 2.8 | 0.005 | 0.62 | 0.0 | 0.04 | 22.83 | 0.01 | 1.966 | 1.81 | 1.59 | 5.5 | 94.5 | 0.0 | -0.65 | 0.25 | 0.70 | 0.90 | 5.43 | 115899 | 1179 | 11 | 3016 | 2 | 1 | 41852 | logfile |
✔ | 8E41 | 27876 | 2024-03-12 | 2022-08-17 | 2.13 | 2.86 | 2.57 | 2.6 | 0.005 | 0.36 | 1.0 | 0.02 | 23.37 | 0.02 | 1.983 | 1.89 | 0.85 | 5.2 | 94.8 | 0.0 | 0.82 | 0.73 | 0.90 | 5.26 | 2.6 | 0.005 | 0.59 | 1.0 | 0.04 | 23.21 | 0.01 | 1.982 | 3.23 | 1.48 | 5.9 | 94.0 | 0.1 | 0.21 | 0.23 | 0.73 | 0.91 | 5.29 | 115744 | 1186 | 12 | 3016 | 1 | 0 | 41833 | logfile |
✔ | 8E45 | 27880 | 2024-03-12 | 2022-08-17 | 2.3 | 2.93 | 2.71 | 2.8 | 0.005 | 0.38 | 0.0 | 0.03 | 22.95 | 0.02 | 1.957 | 1.35 | 0.74 | 4.5 | 95.4 | 0.2 | 0.33 | 0.71 | 0.90 | 5.24 | 2.8 | 0.004 | 0.60 | 0.0 | 0.04 | 22.86 | 0.01 | 1.913 | 2.05 | 1.91 | 5.8 | 93.9 | 0.3 | -0.42 | 0.79 | 0.70 | 0.90 | 5.52 | 115749 | 1179 | 11 | 3015 | 1 | 0 | 41831 | logfile |
✔ | 8E33 | 27855 | 2024-03-12 | 2022-08-16 | 2.23 | 2.91 | 2.58 | 2.7 | 0.006 | 0.49 | 0.0 | 0.04 | 23.56 | 0.02 | 1.965 | 2.00 | 0.53 | 4.6 | 95.4 | 0.0 | 0.48 | 0.70 | 0.90 | 5.42 | 2.7 | 0.004 | 0.58 | 0.0 | 0.03 | 23.32 | 0.01 | 1.973 | 3.51 | 1.70 | 5.8 | 94.1 | 0.1 | -0.02 | 0.23 | 0.69 | 0.89 | 5.47 | 115769 | 1179 | 11 | 3015 | 1 | 1 | 41830 | logfile |
✔ | 8E30 | 27852 | 2024-03-12 | 2022-08-16 | 1.91 | 2.70 | 2.42 | 2.5 | 0.006 | 0.57 | 0.0 | 0.04 | 23.56 | 0.02 | 1.967 | 2.02 | 0.64 | 5.3 | 94.5 | 0.2 | 0.82 | 0.74 | 0.91 | 5.44 | 2.5 | 0.004 | 0.64 | 0.0 | 0.05 | 23.33 | 0.01 | 1.951 | 3.64 | 1.80 | 5.8 | 94.0 | 0.3 | 0.37 | 1.19 | 0.73 | 0.91 | 5.79 | 115737 | 1179 | 11 | 3016 | 1 | 0 | 41820 | logfile |
✔ | 8E42 | 27877 | 2024-03-12 | 2022-08-17 | 2.29 | 2.95 | 2.61 | 2.7 | 0.005 | 0.37 | 0.0 | 0.07 | 23.54 | 0.02 | 1.931 | 1.94 | 0.53 | 4.0 | 96.0 | 0.0 | 0.92 | 0.73 | 0.91 | 4.67 | 2.7 | 0.006 | 0.62 | 0.0 | 0.04 | 23.40 | 0.01 | 1.771 | 3.29 | 0.74 | 5.2 | 94.8 | 0.0 | 0.17 | 0.30 | 0.71 | 0.91 | 4.97 | 115718 | 1179 | 11 | 3016 | 2 | 0 | 41815 | logfile |
✔ | 8E3M | 27868 | 2024-03-12 | 2022-08-17 | 2.25 | 2.92 | 2.58 | 2.7 | 0.005 | 0.41 | 0.0 | 0.07 | 23.56 | 0.02 | 1.973 | 2.01 | 1.27 | 4.0 | 96.0 | 0.0 | 0.83 | 0.71 | 0.91 | 5.18 | 2.7 | 0.005 | 0.63 | 0.0 | 0.05 | 23.46 | 0.01 | 1.964 | 3.45 | 2.02 | 5.0 | 94.8 | 0.2 | 0.09 | 0.25 | 0.70 | 0.90 | 5.51 | 115715 | 1179 | 11 | 3016 | 1 | 0 | 41815 | logfile |