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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6KQK | 0753 | 2022-12-12 | 2019-08-18 | 2.17 | 3.14 | — | 2.8 | 0.018 | 1.17 | 12.0 | 0.06 | 14.73 | 0.00 | 1.876 | 11.30 | 0.00 | 7.4 | 92.6 | 0.0 | -4.38 | 0.82 | 0.84 | 4.45 | 2.8 | 0.003 | 0.73 | 2.0 | 0.12 | 15.48 | 0.00 | 1.779 | 9.80 | 0.53 | 4.0 | 96.0 | 0.0 | 0.22 | 0.79 | 0.82 | 0.86 | 4.19 | 63373 | 3936 | 24 | 0 | 48 | 0 | 31225 | logfile |
✔ | 6KQ8 | 0751 | 2022-12-12 | 2019-08-16 | 3.0 | 4.05 | — | 3.7 | 0.004 | 0.68 | 3.0 | 0.13 | 12.41 | 0.00 | 2.049 | 6.27 | 0.00 | 4.3 | 95.7 | 0.0 | -4.72 | 0.87 | 0.86 | 3.55 | 3.7 | 0.004 | 0.74 | 2.0 | 0.13 | 13.96 | 0.00 | 2.056 | 7.67 | 0.31 | 4.2 | 95.8 | 0.0 | 0.29 | 1.38 | 0.87 | 0.86 | 3.88 | 62197 | 3936 | 24 | 0 | 12 | 0 | 31225 | logfile |
✔ | 6KoU | 0740 | 2022-12-12 | 2019-08-13 | 2.43 | 3.57 | — | 3.0 | 0.004 | 0.67 | 1.0 | 0.13 | 11.88 | 0.00 | 2.006 | 4.07 | 0.00 | 3.0 | 97.0 | 0.0 | -4.12 | 0.85 | 0.88 | 4.03 | 3.1 | 0.004 | 0.74 | 2.0 | 0.13 | 13.97 | 0.00 | 2.071 | 6.52 | 0.28 | 4.0 | 96.0 | 0.0 | 0.82 | 1.07 | 0.85 | 0.89 | 3.83 | 62209 | 3936 | 24 | 0 | 24 | 0 | 31225 | logfile |
✔ | 6KQ4 | 0750 | 2022-12-12 | 2019-08-16 | 2.3 | 3.29 | — | 3.0 | 0.007 | 0.65 | 0.0 | 0.06 | 13.31 | 0.00 | 2.167 | 3.58 | 0.37 | 4.3 | 95.7 | 0.0 | -3.29 | 0.85 | 0.87 | 4.30 | 2.9 | 0.005 | 0.72 | 1.0 | 0.13 | 15.65 | 0.00 | 1.988 | 4.00 | 0.50 | 3.7 | 96.3 | 0.0 | 1.31 | 0.78 | 0.84 | 0.89 | 4.25 | 62206 | 3936 | 24 | 0 | 24 | 0 | 31222 | logfile |
✔ | 6KPH | 0746 | 2022-12-12 | 2019-08-15 | 2.41 | 3.45 | — | 3.2 | 0.014 | 1.03 | 0.0 | 0.15 | 13.22 | 0.00 | 1.838 | 8.27 | 0.00 | 8.5 | 91.5 | 0.0 | -4.25 | 0.81 | 0.85 | 4.19 | 3.2 | 0.005 | 0.76 | 0.0 | 0.15 | 15.00 | 0.00 | 1.731 | 8.05 | 1.12 | 4.2 | 95.8 | 0.0 | -0.15 | 0.81 | 0.80 | 0.86 | 4.41 | 62832 | 3936 | 24 | 0 | 48 | 0 | 31212 | logfile |
✔ | 6KPE | 0743 | 2022-12-12 | 2019-08-15 | 2.83 | 4.04 | — | 3.7 | 0.009 | 0.82 | 0.0 | 0.14 | 13.07 | 0.00 | 2.040 | 13.53 | 0.00 | 10.4 | 89.6 | 0.0 | -5.24 | 0.83 | 0.84 | 3.18 | 3.5 | 0.004 | 0.83 | 0.0 | 0.16 | 15.55 | 0.00 | 2.043 | 10.01 | 1.34 | 6.0 | 94.0 | 0.0 | -0.31 | 1.70 | 0.83 | 0.85 | 3.26 | 62184 | 3936 | 24 | 0 | 12 | 0 | 31212 | logfile |
✔ | 7KQB | 22993 | 2022-12-12 | 2020-11-14 | 2.42 | 3.64 | 2.56 | 2.6 | 0.012 | 1.79 | 14.0 | 0.10 | 13.73 | 0.01 | 2.506 | 0.50 | 1.23 | 5.3 | 94.4 | 0.2 | -1.06 | 0.79 | 0.62 | 3.08 | 2.6 | 0.004 | 0.60 | 0.0 | 0.04 | 14.05 | 0.00 | 2.016 | 5.29 | 0.64 | 5.0 | 95.0 | 0.0 | -0.43 | 0.56 | 0.89 | 0.85 | 2.64 | 63309 | 4105 | 10 | 0 | 23 | 0 | 31094 | logfile |
✔ | 6YY0 | 11001 | 2022-12-12 | 2020-05-04 | 3.23 | 3.34 | 3.07 | 3.3 | 0.006 | 0.68 | 0.0 | 0.04 | 15.27 | 0.00 | 1.847 | 8.22 | 0.00 | 8.4 | 91.6 | 0.0 | -0.84 | 0.72 | 0.84 | 2.97 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 16.03 | 0.00 | 1.772 | 5.95 | 0.22 | 4.2 | 95.8 | 0.0 | 0.47 | 0.35 | 0.73 | 0.85 | 2.69 | 61162 | 3926 | 25 | 0 | 11 | 17 | 30826 | logfile |
✔ | 6Fo0 | 4286 | 2022-12-12 | 2018-02-05 | 4.1 | 4.16 | 2.43 | 4.1 | 0.012 | 0.96 | 0.0 | 0.05 | 8.97 | 0.01 | 2.040 | 5.74 | 0.00 | 10.2 | 89.8 | 0.1 | -4.55 | 0.72 | 0.79 | — | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 12.58 | 0.00 | 1.917 | 10.46 | 0.00 | 6.1 | 93.9 | 0.0 | -1.31 | 2.42 | 0.74 | 0.81 | — | 61356 | 3910 | 24 | 0 | 8 | 0 | 30362 | logfile |
✔ | 7RFG | 24441 | 2022-12-12 | 2021-07-14 | 2.6 | 2.42 | — | 2.4 | 0.013 | 2.03 | 27.0 | 0.11 | 18.66 | 0.02 | 2.518 | 1.42 | 1.84 | 4.2 | 95.6 | 0.2 | -0.50 | 0.62 | 0.80 | 5.41 | 2.4 | 0.003 | 0.65 | 0.0 | 0.06 | 19.31 | 0.00 | 1.900 | 6.41 | 1.28 | 3.0 | 97.0 | 0.0 | 0.16 | 1.64 | 0.64 | 0.83 | 4.82 | 60824 | 3928 | 16 | 0 | 32 | 0 | 30240 | logfile |
✘ | 7RGM | 24452 | 2022-12-19 | 2021-07-15 | 2.8 | 2.86 | — | 2.9 | 0.014 | 1.70 | 0.0 | 0.08 | 15.75 | 0.01 | 2.328 | 2.22 | 3.63 | 5.2 | 94.6 | 0.3 | -1.77 | 0.62 | 0.86 | 3.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 59928 | 3872 | 16 | 0 | 32 | 0 | 29736 | logfile |
✔ | 7L2Z | 23146 | 2022-12-12 | 2020-12-17 | 3.4 | 3.78 | — | 3.7 | 0.002 | 0.50 | 1.0 | 0.05 | 12.49 | 0.00 | 1.866 | 2.70 | 0.63 | 3.6 | 96.4 | 0.0 | -2.91 | 0.74 | 0.75 | 1.52 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 13.98 | 0.00 | 1.851 | 6.61 | 0.09 | 6.0 | 94.0 | 0.0 | -1.13 | 0.78 | 0.77 | 0.82 | 2.18 | 59631 | 3866 | 6 | 0 | 0 | 0 | 29676 | logfile |
✔ | 7RGQ | 24454 | 2022-12-12 | 2021-07-15 | 3.9 | 3.65 | — | 3.7 | 0.013 | 1.98 | 9.0 | 0.09 | 17.74 | 0.01 | 2.357 | 2.34 | 2.74 | 6.9 | 92.4 | 0.7 | -1.98 | 0.56 | 0.81 | 3.07 | 3.7 | 0.004 | 0.66 | 0.0 | 0.04 | 17.64 | 0.00 | 1.954 | 12.14 | 0.29 | 6.6 | 93.4 | 0.0 | -1.22 | 1.77 | 0.55 | 0.81 | 2.30 | 59832 | 3848 | 16 | 0 | 40 | 0 | 29544 | logfile |
✔ | 7RFE | 24439 | 2022-12-12 | 2021-07-14 | 2.6 | 2.27 | — | 2.5 | 0.013 | 2.07 | 13.0 | 0.10 | 19.39 | 0.02 | 2.500 | 1.30 | 2.87 | 3.5 | 96.2 | 0.2 | -0.73 | 0.60 | 0.78 | 5.31 | 2.5 | 0.005 | 0.68 | 0.0 | 0.04 | 18.45 | 0.00 | 1.873 | 7.08 | 1.31 | 3.2 | 96.8 | 0.0 | 0.73 | 0.77 | 0.63 | 0.82 | 4.36 | 58720 | 3800 | 16 | 0 | 32 | 0 | 29200 | logfile |
✔ | 6PMi | 20394 | 2022-12-12 | 2019-07-02 | 3.86 | 4.66 | — | 4.1 | 0.012 | 1.26 | 0.0 | 0.06 | 15.81 | 0.01 | 1.949 | 12.38 | 0.24 | 10.7 | 88.9 | 0.4 | -4.48 | 0.69 | 0.51 | 0.20 | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 17.35 | 0.00 | 1.817 | 21.64 | 0.41 | 9.6 | 90.3 | 0.1 | -2.29 | 1.36 | 0.86 | 0.77 | 0.35 | 57985 | 3453 | 10 | 110 | 4 | 0 | 28610 | logfile |
✔ | 6PMJ | 20395 | 2022-12-12 | 2019-07-02 | 3.91 | 5.34 | — | 4.4 | 0.011 | 1.21 | 0.0 | 0.06 | 15.82 | 0.01 | 2.011 | 11.05 | 0.31 | 10.4 | 89.3 | 0.3 | -4.41 | 0.67 | 0.43 | 0.20 | 4.4 | 0.003 | 0.70 | 0.0 | 0.04 | 17.49 | 0.00 | 1.825 | 20.54 | 0.31 | 8.2 | 91.6 | 0.1 | -2.11 | 1.65 | 0.89 | 0.77 | 0.28 | 57984 | 3453 | 10 | 110 | 4 | 0 | 28609 | logfile |
✔ | 6XZQ | 10665 | 2022-12-12 | 2020-02-05 | 3.6 | 4.18 | 3.53 | 3.7 | 0.005 | 0.64 | 0.0 | 0.04 | 15.64 | 0.01 | 1.924 | 5.97 | 1.26 | 5.0 | 95.0 | 0.0 | -2.44 | 0.89 | 0.79 | 1.95 | 3.8 | 0.004 | 0.60 | 0.0 | 0.04 | 15.91 | 0.00 | 1.901 | 9.41 | 0.23 | 5.4 | 94.6 | 0.0 | -0.43 | 0.78 | 0.90 | 0.82 | 1.87 | 56888 | 3492 | 8 | 19 | 0 | 0 | 28480 | logfile |
✔ | 7M05 | 23609 | 2022-12-12 | 2021-03-10 | 2.39 | 2.66 | 2.49 | 2.6 | 0.013 | 1.00 | 0.0 | 0.06 | 14.78 | 0.01 | 2.064 | 3.94 | 0.50 | 6.9 | 92.3 | 0.8 | -3.01 | 0.75 | 0.81 | 4.52 | 2.6 | 0.003 | 0.59 | 0.0 | 0.05 | 16.31 | 0.00 | 2.054 | 3.50 | 1.00 | 3.1 | 96.8 | 0.1 | 0.36 | 1.28 | 0.79 | 0.84 | 3.90 | 57152 | 3636 | 12 | 0 | 4 | 0 | 28188 | logfile |
✔ | 6E9Y | 9020 | 2022-12-11 | 2018-08-01 | 4.3 | 4.50 | — | 4.3 | 0.008 | 0.73 | 0.0 | 0.04 | 7.51 | 0.00 | 1.433 | 25.35 | 0.00 | 3.1 | 96.9 | 0.0 | -3.58 | 0.75 | 0.80 | — | 4.3 | 0.003 | 0.53 | 0.0 | 0.03 | 11.06 | 0.00 | 2.036 | 9.37 | 0.00 | 1.4 | 98.6 | 0.0 | 2.12 | 1.50 | 0.76 | 0.82 | — | 54450 | 3405 | 15 | 0 | 0 | 0 | 28155 | logfile |
✔ | 6Yo0 | 10862 | 2022-12-11 | 2020-04-14 | 2.9 | 3.37 | 2.94 | 3.1 | 0.009 | 0.75 | 0.0 | 0.04 | 9.57 | 0.00 | 1.889 | 11.26 | 0.27 | 3.7 | 96.3 | 0.0 | -0.60 | 0.84 | 0.87 | 3.83 | 3.1 | 0.004 | 0.57 | 0.0 | 0.04 | 13.58 | 0.00 | 1.769 | 8.27 | 0.87 | 4.5 | 95.5 | 0.0 | 1.11 | 0.80 | 0.84 | 0.89 | 3.18 | 55780 | 3598 | 17 | 0 | 10 | 0 | 28102 | logfile |