Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XH8	22185	2023-07-07	2020-06-18	4.1	4.25	—	3.9	0.012	1.12	0.0	0.06	14.73	0.01	2.006	9.71	0.27	13.7	86.2	0.1	-4.93	0.82	0.73	—	3.9	0.003	0.64	0.0	0.04	15.25	0.00	1.412	12.88	0.03	8.0	91.9	0.1	-2.13	1.27	0.81	0.75	—	65970	3951	14	110	5	0	32621	logfile
✔	6ZDH	11174	2023-07-08	2020-06-14	3.7	3.91	—	3.8	0.004	0.57	0.0	0.04	9.44	0.00	1.948	4.61	0.83	4.1	95.9	0.0	0.08	0.79	0.79	2.39	3.8	0.004	0.60	0.0	0.04	12.71	0.00	1.958	9.24	0.43	5.8	94.2	0.0	-0.57	0.81	0.80	0.80	2.44	66571	4308	25	0	49	0	32513	logfile
✘	6QEL	4537	2023-07-06	2019-01-08	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64816	4092	24	0	24	0	32302	logfile
✔	7LCN	23277	2023-07-08	2021-01-11	3.35	3.96	—	3.5	0.014	1.95	26.0	0.12	14.38	0.02	2.509	0.43	2.55	9.4	89.0	1.6	-2.18	0.83	0.73	2.09	3.5	0.003	0.65	0.0	0.04	14.50	0.00	1.856	7.41	0.24	7.2	92.4	0.4	-1.46	0.68	0.84	0.74	1.86	66313	4296	27	0	63	0	32245	logfile
✔	7TZ6	26203	2023-07-06	2022-02-15	2.88	3.27	—	3.2	0.005	0.77	0.0	0.04	12.10	0.01	2.038	1.51	0.26	2.6	97.3	0.0	0.43	0.65	0.83	3.78	3.2	0.004	0.59	0.0	0.04	15.55	0.00	1.871	4.27	1.44	3.0	97.0	0.0	1.48	0.72	0.67	0.86	3.24	64906	4126	28	0	10	0	32164	logfile
✔	7YLA	33904	2023-07-10	2022-07-25	2.52	2.04	2.52	1.6	0.006	0.71	0.0	0.04	14.58	0.01	1.980	8.85	0.75	4.3	95.5	0.3	-0.94	0.81	0.81	3.97	1.6	0.007	0.66	0.0	0.04	15.01	0.01	1.842	11.07	1.04	4.6	95.3	0.1	-0.79	1.10	0.83	0.84	3.60	125784	3775	36	2994	6	0	32052	logfile
✔	7RGD	24448	2023-07-06	2021-07-15	3.0	2.86	—	2.9	0.013	2.01	16.0	0.10	18.69	0.01	2.298	2.66	3.19	6.6	93.1	0.3	-1.64	0.57	0.85	4.68	2.9	0.004	0.65	0.0	0.04	17.70	0.01	1.963	5.57	2.03	5.8	94.2	0.0	0.03	1.38	0.58	0.87	4.22	64424	4152	16	0	40	0	31840	logfile
✔	7LAB	23248	2023-07-07	2021-01-06	2.97	3.41	—	3.3	0.015	1.90	4.0	0.15	13.74	0.02	2.016	0.76	1.59	6.5	93.0	0.5	-1.34	0.76	0.77	3.26	3.3	0.004	0.62	0.0	0.04	14.78	0.00	1.991	5.90	1.48	5.1	94.8	0.1	-0.48	0.80	0.79	0.81	2.79	64902	4194	26	0	59	0	31607	logfile
✔	8E2D	27832	2023-07-06	2022-08-15	2.07	2.27	2.16	2.3	0.003	0.56	0.0	0.04	15.75	0.00	1.968	6.49	0.85	2.0	98.0	0.0	1.44	0.63	0.82	4.02	2.3	0.003	0.53	0.0	0.04	15.83	0.00	1.974	6.71	1.02	2.3	97.7	0.0	1.97	0.39	0.64	0.83	3.91	62460	3936	2	0	0	0	31562	logfile
✘	7ZQC	14870	2023-07-18	2022-04-29	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	82030	4165	39	0	351	621	31531	logfile
✔	6JCZ	9800	2023-07-06	2019-01-30	3.35	4.22	—	3.7	0.006	0.81	0.0	0.04	15.49	0.00	1.670	3.80	0.00	6.8	93.2	0.0	-5.41	0.85	0.74	2.43	3.8	0.005	0.68	0.0	0.04	16.54	0.00	1.764	10.95	0.06	6.9	93.1	0.0	-2.78	2.63	0.87	0.85	2.58	63476	3959	36	0	48	99	31525	logfile
✔	6JD1	9801	2023-07-06	2019-01-30	3.38	4.55	—	3.9	0.013	1.00	0.0	0.05	14.90	0.00	2.005	6.39	0.00	7.3	92.7	0.0	-4.95	0.85	0.70	1.18	4.0	0.005	0.66	0.0	0.04	15.75	0.00	1.770	17.72	0.50	8.6	91.4	0.0	-2.50	1.31	0.88	0.85	1.75	63427	3953	36	0	60	192	31469	logfile
✘	7X76	33033	2023-07-06	2022-03-09	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64334	3793	18	168	15	0	31436	logfile
✔	7AP8	11850	2023-07-06	2020-10-16	3.15	3.74	—	3.3	0.003	0.55	0.0	0.04	11.91	0.00	2.018	3.39	1.76	5.4	94.6	0.0	0.12	0.88	0.82	3.38	3.3	0.003	0.52	0.0	0.04	13.48	0.00	1.905	6.53	0.14	6.1	93.9	0.0	0.31	0.68	0.89	0.84	3.16	62909	3782	15	42	5	0	31397	logfile
✔	6KPi	0747	2023-07-06	2019-08-15	2.43	3.50	—	3.0	0.008	0.67	0.0	0.06	11.99	0.00	1.974	5.19	0.00	7.1	92.9	0.0	-4.39	0.85	0.88	4.58	3.0	0.005	0.78	3.0	0.13	14.43	0.00	1.988	5.83	0.62	3.5	96.5	0.0	1.23	0.72	0.85	0.89	4.30	62209	3936	24	0	24	0	31225	logfile
✔	6KPK	0749	2023-07-06	2019-08-15	2.3	3.44	—	3.0	0.006	0.71	0.0	0.06	12.55	0.00	2.127	4.93	0.37	5.5	94.5	0.0	-3.66	0.84	0.88	4.21	3.2	0.004	0.73	1.0	0.13	14.36	0.00	1.954	5.48	0.66	3.8	96.2	0.0	0.92	0.75	0.83	0.89	4.27	62209	3936	24	0	24	0	31225	logfile
✔	6KQK	0753	2023-07-06	2019-08-18	2.17	3.14	—	2.8	0.018	1.17	12.0	0.06	14.73	0.00	1.876	11.30	0.00	7.4	92.6	0.0	-4.38	0.82	0.84	4.45	2.8	0.003	0.73	2.0	0.12	15.49	0.00	1.782	9.69	0.69	4.1	95.9	0.0	0.23	0.79	0.82	0.86	4.20	63373	3936	24	0	48	0	31225	logfile
✔	6KQ8	0751	2023-07-06	2019-08-16	3.0	4.05	—	3.7	0.004	0.68	3.0	0.13	12.41	0.00	2.049	6.27	0.00	4.3	95.7	0.0	-4.72	0.87	0.86	3.55	3.7	0.005	0.76	2.0	0.13	13.98	0.00	2.013	7.94	0.25	5.8	94.2	0.0	-0.01	1.38	0.87	0.87	3.82	62197	3936	24	0	12	0	31225	logfile
✔	6KPJ	0748	2023-07-06	2019-08-15	2.56	3.82	—	3.3	0.014	0.94	0.0	0.06	12.22	0.00	1.218	8.38	0.00	6.7	93.3	0.0	-4.33	0.85	0.86	3.83	3.3	0.005	0.73	1.0	0.13	14.32	0.00	1.110	6.83	0.50	3.1	96.9	0.0	0.92	0.69	0.85	0.87	3.62	62845	3936	24	0	48	0	31225	logfile
✔	6KQo	0754	2023-07-06	2019-08-18	2.52	3.75	—	3.2	0.019	1.16	0.0	0.07	14.49	0.00	1.883	10.69	0.03	9.4	90.6	0.0	-5.07	0.87	0.85	3.52	3.3	0.004	0.74	1.0	0.12	15.30	0.00	1.796	8.64	0.84	3.5	96.5	0.0	0.22	1.66	0.85	0.84	3.14	63373	3936	24	0	48	0	31225	logfile

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