Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QTZ	4636	2023-04-27	2019-02-26	3.5	3.65	—	3.6	0.006	0.81	8.0	0.04	15.79	0.01	1.165	4.32	0.66	7.3	92.5	0.2	-4.44	0.83	0.84	2.55	3.6	0.002	0.53	0.0	0.03	15.96	0.00	2.060	9.26	0.45	5.4	94.6	0.1	-1.24	0.50	0.84	0.85	1.85	130259	7050	54	3423	217	0	0	logfile
✔	3JCS	6583	2023-04-23	2016-01-21	2.8	3.07	—	3.0	0.009	0.98	1.0	0.05	19.57	0.03	1.093	24.89	1.41	11.8	88.0	0.2	-5.35	0.72	0.78	3.98	3.0	0.007	0.88	0.0	0.04	19.86	0.01	1.859	18.52	3.13	10.9	89.1	0.1	-2.74	0.51	0.71	0.80	2.76	117257	5847	74	3420	109	144	0	logfile
✔	5XXB	6778	2023-04-24	2017-07-03	3.17	3.22	—	3.2	0.006	1.07	5.0	0.09	17.43	0.00	1.261	4.91	4.74	7.1	91.3	1.5	-3.54	0.65	0.77	2.19	3.2	0.009	0.86	0.0	0.05	17.10	0.01	1.983	9.68	0.81	7.7	91.7	0.6	-1.71	0.63	0.82	0.87	1.85	121433	6215	44	3352	0	0	0	logfile
✔	6N8J	0369	2023-04-27	2018-11-29	3.5	3.75	—	3.6	0.007	0.95	0.0	0.05	15.15	0.01	1.297	3.61	0.51	7.3	92.4	0.3	-4.65	0.82	0.87	3.28	3.6	0.006	0.68	0.0	0.04	16.08	0.00	1.822	9.96	0.39	8.7	91.1	0.1	-1.43	1.25	0.82	0.87	2.28	132554	7675	51	3326	96	0	0	logfile
✔	7BT6	30170	2023-04-28	2020-03-31	3.12	3.18	—	3.1	0.006	0.77	0.0	0.04	18.45	0.01	1.797	8.80	9.89	9.5	90.1	0.4	-4.14	0.73	0.83	2.12	3.1	0.004	0.69	0.0	0.04	18.09	0.01	1.803	8.46	0.36	9.2	90.6	0.2	-1.93	1.42	0.75	0.86	1.99	133299	8031	52	3241	7	0	0	logfile
✔	8EUG	24412	2023-04-25	2022-10-18	2.8	2.82	—	2.8	0.005	0.53	0.0	0.03	15.48	0.00	2.091	7.67	0.47	3.5	96.2	0.3	-0.23	0.81	0.81	3.22	2.8	0.004	0.59	0.0	0.04	15.74	0.00	2.056	9.21	1.87	4.0	95.8	0.2	0.13	0.30	0.81	0.82	3.01	123162	7108	47	3138	1	0	0	logfile
✔	8EUi	24423	2023-04-25	2022-10-18	3.1	3.13	—	3.1	0.004	0.52	0.0	0.03	15.20	0.00	2.143	7.87	0.18	3.8	96.2	0.1	-0.02	0.82	0.81	3.11	3.1	0.004	0.56	0.0	0.04	15.41	0.00	2.061	8.79	0.30	4.0	96.0	0.0	0.31	0.28	0.82	0.82	2.66	122892	7155	47	3131	1	0	0	logfile
✔	6PC7	20298	2023-04-27	2019-06-16	2.5	3.01	—	2.9	0.006	0.51	0.0	0.03	12.98	0.03	1.954	2.85	2.23	6.2	93.7	0.1	-3.93	0.66	0.85	3.71	2.9	0.006	0.71	0.0	0.04	14.71	0.01	1.999	7.54	4.34	6.8	93.0	0.2	-1.16	1.25	0.67	0.88	4.01	72146	964	8	3015	1	0	0	logfile
✘	6PC8	20299	2023-04-27	2019-06-16	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72169	967	8	3015	1	0	0	logfile
✔	6WYV	21969	2023-04-27	2020-05-13	2.75	3.18	—	3.0	0.006	0.51	1.0	0.02	13.15	0.03	1.925	3.89	1.57	7.1	92.8	0.1	-4.66	0.70	0.84	3.35	3.0	0.004	0.69	1.0	0.03	15.47	0.01	2.001	11.08	4.98	7.6	92.3	0.1	-1.76	1.51	0.71	0.88	3.05	72194	971	9	3015	1	0	0	logfile
✔	6PC5	20296	2023-04-27	2019-06-16	2.7	3.05	—	2.9	0.006	0.50	1.0	0.02	12.77	0.03	1.965	2.72	1.57	6.1	93.8	0.1	-3.49	0.73	0.88	5.14	2.9	0.005	0.67	1.0	0.04	14.66	0.01	1.955	7.37	3.54	6.2	93.6	0.2	-1.00	1.24	0.74	0.91	4.41	72206	971	9	3015	1	0	0	logfile
✔	6PCS	20306	2023-04-27	2019-06-18	2.8	3.17	—	3.0	0.005	0.40	0.0	0.02	12.69	0.03	1.658	3.31	1.31	5.7	94.1	0.1	-3.87	0.66	0.86	3.98	3.0	0.006	0.72	0.0	0.04	15.09	0.01	1.964	8.80	4.06	7.2	92.5	0.3	-1.60	1.27	0.67	0.89	3.52	72169	967	8	3015	1	0	0	logfile
✔	6PCR	20305	2023-04-27	2019-06-18	2.5	3.04	—	2.9	0.006	0.47	0.0	0.03	13.21	0.03	1.808	2.72	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	2.9	0.005	0.69	0.0	0.03	14.91	0.01	1.905	6.82	2.36	6.1	93.9	0.0	-0.53	1.23	0.72	0.91	4.47	72166	967	8	3015	1	0	0	logfile
✔	6PCH	20300	2023-04-27	2019-06-17	2.9	3.23	—	3.1	0.005	0.40	0.0	0.02	12.74	0.03	1.702	3.90	2.23	7.9	92.0	0.1	-4.23	0.61	0.79	3.30	3.1	0.005	0.75	0.0	0.04	15.49	0.01	1.995	11.55	5.52	8.1	91.7	0.2	-2.21	0.50	0.63	0.83	1.98	72134	964	8	3015	1	0	0	logfile
✔	6PC6	20297	2023-04-27	2019-06-16	2.5	3.08	—	2.9	0.008	0.56	0.0	0.02	13.08	0.03	1.930	2.91	2.11	6.3	93.7	0.0	-3.58	0.73	0.88	4.50	2.9	0.005	0.67	0.0	0.03	14.86	0.01	1.949	7.94	3.68	6.6	93.2	0.2	-0.81	0.91	0.74	0.90	4.30	72127	963	8	3015	1	0	0	logfile
✔	6PCT	20307	2023-04-27	2019-06-18	2.8	3.01	—	2.9	0.006	0.43	2.0	0.03	12.76	0.03	1.891	2.96	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.005	0.70	0.0	0.04	14.72	0.01	2.058	8.14	3.81	6.8	93.1	0.1	-1.02	0.41	0.68	0.88	4.35	72198	964	8	3015	1	0	0	logfile
✔	6PCQ	20304	2023-04-27	2019-06-18	2.6	3.06	—	2.9	0.008	0.46	0.0	0.02	12.76	0.03	1.976	3.10	1.84	6.8	93.2	0.0	-4.00	0.66	0.84	4.35	2.9	0.006	0.73	0.0	0.04	15.08	0.01	2.032	9.59	3.95	7.7	92.1	0.2	-1.58	1.72	0.67	0.86	3.88	72125	963	8	3015	1	0	0	logfile
✔	7YLA	33904	2023-04-25	2022-07-25	2.52	2.04	2.52	1.6	0.006	0.71	0.0	0.04	14.58	0.01	1.980	8.85	0.75	4.3	95.5	0.3	-0.94	0.81	0.81	3.97	1.6	0.007	0.66	0.0	0.04	15.01	0.01	1.842	11.07	1.04	4.6	95.3	0.1	-0.79	1.10	0.83	0.84	3.60	125784	3775	36	2994	6	0	32052	logfile
✔	6YLY	10842	2023-04-23	2020-04-07	3.8	3.72	3.83	3.7	0.013	1.20	3.0	0.06	17.41	0.01	1.952	6.32	0.11	2.4	97.5	0.0	-4.15	0.80	0.80	1.65	3.7	0.007	0.83	1.0	0.04	17.79	0.01	1.761	20.74	0.73	9.6	90.3	0.1	-1.99	0.65	0.81	0.82	1.38	120663	7352	52	2899	3	0	0	logfile
✔	5XY3	6784	2023-04-19	2017-07-06	3.2	3.24	—	3.2	0.006	1.04	7.0	0.09	17.01	0.00	1.123	6.22	3.45	6.0	92.7	1.3	-3.33	0.61	0.76	2.54	3.2	0.008	0.82	1.0	0.05	16.69	0.01	1.918	8.25	0.93	6.4	93.2	0.4	-1.44	0.61	0.78	0.86	2.28	107145	5917	43	2815	0	0	0	logfile

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