Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WDC	21631	2022-05-22	2020-03-31	4.2	4.07	4.55	3.9	0.006	1.01	0.0	0.08	13.38	0.01	2.262	11.91	1.14	13.3	84.6	2.1	-5.10	0.77	0.73	—	3.9	0.005	0.82	0.0	0.04	16.57	0.01	1.982	31.11	0.02	13.2	86.7	0.1	-3.37	0.84	0.80	0.76	—	150149	6024	59	4807	0	0	0	logfile
✔	6WDi	21637	2022-05-21	2020-03-31	4.0	4.30	4.78	4.1	0.006	0.98	0.0	0.08	13.16	0.01	2.280	9.92	0.49	12.5	85.9	1.6	-4.84	0.77	0.71	—	4.1	0.006	0.84	1.0	0.04	17.26	0.01	1.956	30.28	0.76	11.7	88.2	0.1	-3.28	0.86	0.81	0.75	—	149628	5954	59	4807	0	0	0	logfile
✔	6WDB	21630	2022-05-22	2020-03-31	4.0	4.30	5.11	4.1	0.006	0.99	0.0	0.08	13.33	0.01	2.211	11.49	0.77	11.9	86.2	1.9	-4.97	0.78	0.72	—	4.1	0.007	0.92	2.0	0.04	17.49	0.01	1.940	38.64	1.20	13.5	86.3	0.2	-3.34	0.89	0.82	0.77	—	150149	6024	59	4807	0	0	0	logfile
✔	5ZEP	6921	2022-05-23	2018-02-27	3.4	5.11	—	4.5	0.010	1.18	5.0	0.06	16.72	0.01	1.089	21.21	3.06	8.5	90.3	1.3	-3.96	0.70	0.53	0.11	4.5	0.005	0.79	1.0	0.04	17.96	0.01	1.949	28.34	0.79	7.6	92.2	0.2	-1.82	1.67	0.90	0.86	0.20	152451	6193	58	4802	262	0	0	logfile
✔	5WFK	8828	2022-05-24	2017-07-12	3.4	3.64	3.59	3.6	0.008	1.13	3.0	0.10	17.64	0.02	1.013	3.77	3.19	9.7	88.0	2.3	-4.14	0.77	0.78	1.88	3.6	0.007	0.87	0.0	0.04	17.07	0.01	1.732	15.53	1.34	10.1	89.3	0.6	-2.02	3.36	0.82	0.83	1.56	154325	6324	113	4802	1415	419	0	logfile
✔	5WE4	8814	2022-05-25	2017-07-07	3.1	3.04	3.02	3.0	0.008	1.16	3.0	0.10	17.51	0.02	1.575	3.80	3.52	9.8	87.9	2.3	-4.03	0.78	0.81	2.62	3.0	0.009	0.94	0.0	0.05	17.15	0.01	0.977	12.76	0.99	9.2	90.2	0.6	-2.13	3.97	0.83	0.82	2.48	155067	6324	117	4802	1620	996	0	logfile
✔	5WFS	8829	2022-05-25	2017-07-12	3.0	3.09	3.13	3.0	0.008	1.18	2.0	0.10	18.12	0.02	1.324	4.25	3.10	9.3	88.2	2.4	-4.11	0.73	0.77	2.42	3.0	0.006	0.84	0.0	0.04	17.51	0.01	1.080	12.75	3.60	8.3	91.1	0.5	-1.91	0.63	0.83	0.84	2.24	155100	6324	114	4802	1479	1175	0	logfile
✔	5ZEB	6920	2022-05-22	2018-02-27	3.4	3.46	—	3.4	0.010	1.18	2.0	0.06	16.63	0.01	1.088	18.36	3.23	8.4	90.3	1.4	-3.95	0.79	0.77	1.84	3.4	0.007	0.75	1.0	0.04	16.49	0.01	1.644	14.56	0.36	8.2	91.5	0.3	-1.49	4.01	0.81	0.82	1.66	150328	6095	56	4802	0	0	0	logfile
✔	5WDT	8813	2022-05-25	2017-07-06	3.0	3.20	3.19	3.2	0.008	1.15	2.0	0.10	17.68	0.02	1.527	4.78	3.29	9.7	88.1	2.3	-4.08	0.77	0.80	2.46	3.1	0.009	0.93	0.0	0.05	17.21	0.01	1.642	12.03	4.67	9.6	89.9	0.6	-1.85	3.20	0.85	0.86	2.43	155275	6324	125	4802	1910	920	0	logfile
✔	5WF0	8826	2022-05-24	2017-07-11	3.6	3.35	3.39	3.3	0.008	1.13	3.0	0.10	17.65	0.02	0.789	3.33	4.47	9.7	87.8	2.4	-4.19	0.75	0.77	2.17	3.3	0.006	0.84	2.0	0.04	17.02	0.01	1.784	14.05	0.14	8.8	90.6	0.6	-1.98	1.19	0.80	0.79	2.01	154600	6324	110	4802	1486	676	0	logfile
✔	5WE6	8815	2022-05-23	2017-07-07	3.4	3.36	3.38	3.3	0.008	1.13	2.0	0.10	17.08	0.02	1.679	1.98	2.48	10.3	87.3	2.4	-4.31	0.77	0.80	2.33	3.3	0.007	0.82	1.0	0.04	16.60	0.01	1.705	10.96	0.15	8.9	90.6	0.5	-2.03	1.90	0.83	0.83	1.72	153233	6322	97	4801	671	153	0	logfile
✔	3JCE	6550	2022-05-24	2015-12-01	3.2	4.36	—	14.0	0.008	0.88	0.0	0.04	14.83	0.00	1.106	32.70	0.47	10.4	84.8	4.8	-2.93	0.33	0.04	0.16	3.2	0.007	1.06	3.0	0.05	17.20	0.01	1.577	41.40	0.19	11.5	87.2	1.3	-3.17	1.17	0.63	0.30	0.33	154017	6546	59	4798	2	0	0	logfile
✔	5iQR	8107	2022-05-24	2016-03-11	3.0	3.10	3.03	3.1	0.008	1.25	41.0	0.10	17.19	0.02	0.899	7.55	6.07	7.5	91.0	1.5	-2.52	0.76	0.81	1.93	3.0	0.006	0.84	1.0	0.04	16.85	0.01	1.093	16.86	3.60	5.9	93.8	0.2	-1.10	1.64	0.82	0.87	1.98	154519	6570	74	4794	303	2	0	logfile
✔	7B5K	12035	2022-05-21	2020-12-03	2.9	2.60	2.95	2.8	0.006	0.90	0.0	0.05	14.17	0.02	1.504	11.20	0.45	3.9	95.9	0.1	-3.45	0.76	0.80	3.32	2.8	0.005	0.75	1.0	0.05	14.92	0.01	1.419	6.80	2.41	4.3	95.6	0.0	-0.49	0.42	0.77	0.82	2.86	148576	5684	80	4790	362	854	0	logfile
✔	5JTE	8175	2022-05-20	2016-05-09	3.6	3.13	—	3.2	0.015	1.75	0.0	0.07	12.22	0.01	1.432	6.32	0.00	7.4	90.0	2.7	-1.94	0.53	0.56	0.78	3.1	0.004	0.86	0.0	0.04	16.18	0.01	1.579	18.21	0.24	9.6	89.6	0.8	-2.86	1.45	0.58	0.68	1.21	146760	5625	59	4786	1	0	0	logfile
✔	5LZD	4124	2022-05-23	2016-09-29	3.4	3.48	3.51	3.4	0.009	1.23	9.0	0.08	13.74	0.02	2.023	6.20	0.71	7.6	91.0	1.4	-3.90	0.75	0.86	2.27	3.4	0.004	0.71	0.0	0.03	14.81	0.01	1.873	13.18	1.09	7.9	91.8	0.3	-1.78	0.57	0.75	0.85	1.51	153177	6439	68	4785	152	2	0	logfile
✔	5LZC	4123	2022-05-23	2016-09-29	4.8	5.11	5.27	4.8	0.009	1.21	10.0	0.08	12.67	0.02	1.994	5.33	0.11	5.7	92.4	1.8	-1.87	0.82	0.82	—	4.8	0.004	0.76	1.0	0.03	14.83	0.01	1.933	25.21	0.02	7.7	91.9	0.4	-1.93	1.42	0.83	0.83	—	152981	6432	64	4785	5	2	0	logfile
✔	5LZE	4125	2022-05-20	2016-09-29	3.5	3.59	3.51	3.5	0.012	1.24	14.0	0.08	14.21	0.02	2.158	4.01	0.72	7.7	90.1	2.2	-3.34	0.76	0.87	2.26	3.5	0.004	0.71	0.0	0.04	15.53	0.01	2.077	13.21	0.95	7.8	91.8	0.4	-1.27	0.66	0.75	0.84	1.77	148018	5817	59	4782	2	0	0	logfile
✔	5LZF	4126	2022-05-20	2016-09-29	4.6	4.86	4.79	4.6	0.008	1.17	5.0	0.08	14.20	0.02	2.141	4.77	0.02	7.1	90.8	2.1	-2.74	0.83	0.85	—	4.6	0.003	0.75	0.0	0.04	15.92	0.01	2.000	24.18	0.04	7.9	91.7	0.5	-1.79	2.47	0.83	0.85	—	148005	5824	58	4779	2	0	0	logfile
✔	6HTQ	0270	2022-05-20	2018-10-04	4.5	4.18	—	4.1	0.008	0.89	0.0	0.04	17.41	0.01	2.213	8.13	0.32	10.3	89.4	0.3	-4.50	0.83	0.79	—	4.1	0.005	0.75	0.0	0.04	17.96	0.01	1.979	24.57	0.06	12.2	87.7	0.1	-2.73	0.75	0.83	0.79	—	146680	5640	53	4770	0	0	0	logfile

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