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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8B7Y | 15905 | 2023-08-24 | 2022-10-03 | 3.0 | 2.45 | 2.96 | 2.8 | 0.005 | 0.76 | 4.0 | 0.05 | 15.62 | 0.01 | 1.792 | 5.28 | 3.80 | 5.7 | 93.5 | 0.8 | -1.45 | 0.77 | 0.78 | 2.97 | 2.8 | 0.003 | 0.69 | 4.0 | 0.04 | 15.97 | 0.01 | 1.825 | 13.19 | 3.20 | 4.9 | 94.8 | 0.2 | -0.94 | 1.55 | 0.78 | 0.80 | 2.79 | 141008 | 5315 | 70 | 4614 | 248 | 28 | 0 | logfile |
✔ | 6ENU | 3903 | 2023-08-29 | 2017-10-06 | 3.1 | 3.15 | — | 3.1 | 0.008 | 1.01 | 1.0 | 0.05 | 15.28 | 0.01 | 1.009 | 4.96 | 1.19 | 10.8 | 88.5 | 0.7 | -4.85 | 0.82 | 0.84 | 2.83 | 3.1 | 0.004 | 0.66 | 0.0 | 0.04 | 15.77 | 0.00 | 2.067 | 11.42 | 0.71 | 9.9 | 89.9 | 0.2 | -2.16 | 0.58 | 0.83 | 0.87 | 2.27 | 146475 | 6094 | 58 | 4613 | 0 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2023-08-29 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.004 | 0.74 | 0.0 | 0.04 | 16.90 | 0.01 | 2.050 | 28.53 | 1.02 | 10.2 | 89.2 | 0.6 | -2.50 | — | 0.92 | 0.85 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✘ | 3JCJ | 6559 | 2023-08-31 | 2015-12-18 | 3.7 | 3.96 | — | 3.8 | 0.007 | 1.05 | 18.0 | 0.10 | 12.45 | 0.01 | 1.344 | 2.06 | 0.39 | 9.2 | 89.0 | 1.8 | -3.55 | 0.80 | 0.75 | 1.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148347 | 6249 | 82 | 4594 | 197 | 837 | 0 | logfile |
✔ | 6VWL | 21420 | 2023-08-23 | 2020-02-20 | 3.1 | 3.37 | — | 3.0 | 0.005 | 0.62 | 0.0 | 0.04 | 13.89 | 0.00 | 1.922 | 7.24 | 1.40 | 4.2 | 95.7 | 0.0 | -2.42 | 0.82 | 0.85 | 2.58 | 3.0 | 0.003 | 0.56 | 0.0 | 0.03 | 15.33 | 0.00 | 1.910 | 12.94 | 0.39 | 5.1 | 94.9 | 0.0 | -0.57 | 0.53 | 0.83 | 0.87 | 2.05 | 140603 | 5383 | 58 | 4593 | 34 | 0 | 0 | logfile |
✔ | 6VWN | 21422 | 2023-08-23 | 2020-02-20 | 3.4 | 3.71 | — | 3.2 | 0.002 | 0.58 | 0.0 | 0.03 | 14.91 | 0.00 | 1.951 | 7.12 | 3.85 | 4.3 | 95.7 | 0.0 | -3.14 | 0.83 | 0.82 | 1.13 | 3.2 | 0.004 | 0.63 | 0.0 | 0.03 | 16.38 | 0.00 | 1.849 | 16.56 | 0.58 | 6.4 | 93.6 | 0.0 | -1.32 | 1.24 | 0.84 | 0.87 | 1.12 | 140036 | 5341 | 57 | 4580 | 55 | 0 | 0 | logfile |
✔ | 5NJT | 3656 | 2023-08-18 | 2017-03-29 | 3.8 | 4.18 | 4.07 | 4.1 | 0.008 | 1.18 | 0.0 | 0.06 | 17.85 | 0.01 | 1.178 | 8.95 | 1.58 | 14.2 | 85.2 | 0.6 | -5.34 | 0.76 | 0.78 | 1.08 | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 18.11 | 0.00 | 1.711 | 20.44 | 1.06 | 11.2 | 88.7 | 0.1 | -2.53 | 0.57 | 0.77 | 0.80 | 0.80 | 133097 | 5596 | 51 | 4579 | 0 | 0 | 0 | logfile |
✔ | 5Li0 | 4050 | 2023-08-24 | 2016-07-13 | 3.8 | 3.91 | — | 3.8 | 0.014 | 1.18 | 1.0 | 0.05 | 14.64 | 0.01 | 1.920 | 5.40 | 0.20 | 14.9 | 84.7 | 0.5 | -5.64 | 0.75 | 0.79 | 1.99 | 3.8 | 0.006 | 0.75 | 0.0 | 0.04 | 15.26 | 0.00 | 1.344 | 14.34 | 0.77 | 11.1 | 88.8 | 0.1 | -2.61 | 0.71 | 0.75 | 0.81 | 1.15 | 140825 | 5396 | 58 | 4575 | 41 | 162 | 0 | logfile |
✔ | 6HRM | 0261 | 2023-08-27 | 2018-09-27 | 2.96 | 3.03 | — | 3.0 | 0.010 | 1.02 | 0.0 | 0.17 | 14.98 | 0.02 | 2.029 | 3.00 | 0.49 | 5.2 | 94.8 | 0.1 | -4.48 | 0.73 | 0.83 | 3.89 | 3.0 | 0.005 | 0.69 | 0.0 | 0.04 | 15.37 | 0.01 | 1.856 | 6.90 | 3.20 | 5.0 | 94.9 | 0.0 | -1.36 | 1.14 | 0.72 | 0.84 | 2.99 | 145179 | 5972 | 64 | 4570 | 438 | 2 | 0 | logfile |
✔ | 5ND9 | 3625 | 2023-08-24 | 2017-03-07 | 3.7 | 3.83 | — | 3.7 | 0.011 | 1.19 | 1.0 | 0.06 | 15.82 | 0.01 | 0.889 | 8.98 | 1.12 | 19.3 | 80.1 | 0.6 | -5.81 | 0.76 | 0.77 | 1.23 | 3.9 | 0.003 | 0.67 | 0.0 | 0.03 | 15.69 | 0.01 | 2.074 | 16.26 | 0.80 | 12.1 | 87.8 | 0.0 | -2.99 | 1.33 | 0.78 | 0.81 | 0.84 | 141051 | 5461 | 52 | 4569 | 0 | 0 | 0 | logfile |
✔ | 5ND8 | 3624 | 2023-08-24 | 2017-03-07 | 3.7 | 3.81 | — | 3.7 | 0.009 | 1.03 | 1.0 | 0.05 | 14.85 | 0.01 | 1.019 | 7.55 | 0.73 | 17.3 | 82.1 | 0.6 | -5.61 | 0.77 | 0.77 | 1.17 | 3.7 | 0.003 | 0.65 | 0.0 | 0.03 | 15.24 | 0.00 | 2.007 | 16.09 | 0.86 | 10.7 | 89.3 | 0.1 | -2.72 | 1.30 | 0.80 | 0.82 | 1.16 | 141043 | 5462 | 52 | 4568 | 0 | 0 | 0 | logfile |
✔ | 6WNV | 21857 | 2023-08-25 | 2020-04-23 | 3.5 | 4.19 | 3.77 | 3.3 | 0.007 | 0.96 | 0.0 | 0.08 | 13.84 | 0.01 | 2.243 | 12.54 | 0.89 | 13.0 | 85.4 | 1.6 | -5.34 | 0.88 | 0.85 | 1.23 | 3.3 | 0.005 | 0.71 | 0.0 | 0.04 | 16.27 | 0.00 | 1.941 | 24.62 | 0.81 | 11.8 | 87.9 | 0.2 | -2.83 | 0.65 | 0.89 | 0.87 | 0.94 | 143036 | 5782 | 52 | 4564 | 0 | 0 | 0 | logfile |
✔ | 5NGM | 3640 | 2023-08-24 | 2017-03-18 | 2.9 | 3.05 | — | 3.0 | 0.006 | 0.86 | 0.0 | 0.05 | 17.23 | 0.01 | 0.270 | 7.58 | 0.81 | 8.3 | 91.7 | 0.0 | -4.79 | 0.70 | 0.72 | 2.80 | 3.0 | 0.005 | 0.63 | 0.0 | 0.04 | 17.58 | 0.00 | 1.847 | 11.83 | 4.43 | 6.7 | 93.3 | 0.0 | -1.89 | 0.66 | 0.78 | 0.85 | 2.33 | 140965 | 5610 | 57 | 4559 | 205 | 0 | 0 | logfile |
✔ | 6S0X | 10076 | 2023-08-24 | 2019-06-18 | 2.425 | 2.50 | — | 2.5 | 0.021 | 2.13 | 0.0 | 0.11 | 21.61 | 0.01 | 0.917 | 12.73 | 19.66 | 9.7 | 90.2 | 0.1 | -4.36 | 0.60 | 0.63 | 2.41 | 2.5 | 0.006 | 1.01 | 0.0 | 0.06 | 20.43 | 0.01 | 1.508 | 19.66 | 6.55 | 8.9 | 91.0 | 0.0 | -2.03 | 0.70 | 0.65 | 0.65 | 2.44 | 140672 | 5589 | 53 | 4559 | 1 | 0 | 0 | logfile |
✔ | 7oTC | 13058 | 2023-08-30 | 2021-06-10 | 2.9 | 3.10 | — | 3.1 | 0.005 | 0.71 | 1.0 | 0.03 | 13.78 | 0.02 | 1.846 | 9.04 | 0.04 | 3.6 | 96.3 | 0.1 | -0.49 | 0.73 | 0.80 | 2.51 | 3.1 | 0.004 | 0.65 | 0.0 | 0.04 | 14.62 | 0.01 | 1.907 | 10.46 | 2.80 | 3.5 | 96.5 | 0.0 | -0.30 | 1.17 | 0.78 | 0.86 | 2.50 | 147132 | 6239 | 64 | 4557 | 305 | 0 | 0 | logfile |
✔ | 7UPH | 26666 | 2023-08-24 | 2022-04-15 | 4.18 | 5.35 | 4.33 | 4.2 | 0.007 | 1.00 | 1.0 | 0.05 | 18.96 | 0.02 | 1.193 | 122.79 | 0.02 | 12.5 | 86.5 | 1.0 | -2.90 | 0.63 | 0.35 | — | 4.3 | 0.007 | 0.88 | 1.0 | 0.04 | 18.39 | 0.01 | 1.165 | 109.33 | 0.02 | 15.7 | 83.6 | 0.7 | -2.80 | 1.34 | 0.87 | 0.78 | — | 141080 | 5442 | 49 | 4556 | 0 | 0 | 625 | logfile |
✔ | 6GXP | 0083 | 2023-08-30 | 2018-06-27 | 4.4 | 5.60 | — | 5.1 | 0.003 | 0.80 | 6.0 | 0.04 | 14.00 | 0.01 | 1.608 | 5.45 | 0.27 | 8.3 | 91.2 | 0.5 | -4.12 | 0.84 | 0.79 | — | 5.0 | 0.005 | 0.74 | 0.0 | 0.04 | 16.15 | 0.01 | 1.967 | 36.94 | 0.02 | 11.1 | 88.7 | 0.1 | -2.14 | 1.96 | 0.87 | 0.85 | — | 147637 | 6392 | 56 | 4555 | 1 | 0 | 0 | logfile |
✔ | 8AM9 | 15523 | 2023-08-25 | 2022-08-03 | 2.8 | 2.46 | 2.69 | 2.6 | 0.006 | 1.01 | 0.0 | 0.05 | 15.06 | 0.03 | 1.779 | 5.74 | 3.55 | 3.8 | 95.9 | 0.3 | -1.06 | 0.75 | 0.81 | 4.19 | 2.6 | 0.005 | 0.75 | 0.0 | 0.04 | 15.37 | 0.01 | 1.789 | 9.86 | 3.70 | 3.8 | 96.1 | 0.0 | -0.44 | 1.22 | 0.77 | 0.84 | 3.77 | 142036 | 5606 | 67 | 4554 | 297 | 2 | 0 | logfile |
✔ | 8AKN | 15488 | 2023-08-29 | 2022-07-30 | 2.3 | 1.94 | 2.20 | 2.2 | 0.013 | 1.78 | 0.0 | 0.17 | 14.48 | 0.02 | 1.528 | 3.25 | 2.19 | 5.9 | 93.2 | 0.9 | -3.31 | 0.61 | 0.80 | 5.18 | 2.1 | 0.005 | 0.79 | 0.0 | 0.04 | 15.02 | 0.01 | 1.767 | 7.21 | 2.33 | 2.6 | 97.3 | 0.1 | -0.01 | 1.22 | 0.72 | 0.85 | 4.95 | 146513 | 5960 | 103 | 4552 | 309 | 1754 | 0 | logfile |
✔ | 7P7U | 13245 | 2023-08-23 | 2021-07-20 | 3.1 | 3.56 | 3.06 | 2.0 | 0.004 | 0.52 | 0.0 | 0.05 | 13.97 | 0.00 | 1.724 | 6.20 | 0.42 | 2.6 | 97.4 | 0.1 | 1.02 | 0.89 | 0.90 | 3.54 | 2.0 | 0.006 | 0.60 | 0.0 | 0.04 | 14.50 | 0.00 | 1.821 | 10.62 | 0.36 | 2.9 | 97.1 | 0.0 | 0.84 | 0.38 | 0.89 | 0.91 | 3.18 | 139826 | 5337 | 64 | 4549 | 344 | 0 | 0 | logfile |