Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B7Y	15905	2023-08-24	2022-10-03	3.0	2.45	2.96	2.8	0.005	0.76	4.0	0.05	15.62	0.01	1.792	5.28	3.80	5.7	93.5	0.8	-1.45	0.77	0.78	2.97	2.8	0.003	0.69	4.0	0.04	15.97	0.01	1.825	13.19	3.20	4.9	94.8	0.2	-0.94	1.55	0.78	0.80	2.79	141008	5315	70	4614	248	28	0	logfile
✔	6ENU	3903	2023-08-29	2017-10-06	3.1	3.15	—	3.1	0.008	1.01	1.0	0.05	15.28	0.01	1.009	4.96	1.19	10.8	88.5	0.7	-4.85	0.82	0.84	2.83	3.1	0.004	0.66	0.0	0.04	15.77	0.00	2.067	11.42	0.71	9.9	89.9	0.2	-2.16	0.58	0.83	0.87	2.27	146475	6094	58	4613	0	0	0	logfile
✘	6o9K	0662	2023-08-29	2019-03-14	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-2.96	—	—	—	4.0	0.004	0.74	0.0	0.04	16.90	0.01	2.050	28.53	1.02	10.2	89.2	0.6	-2.50	—	0.92	0.85	—	146597	6162	55	4594	0	0	0	logfile
✘	3JCJ	6559	2023-08-31	2015-12-18	3.7	3.96	—	3.8	0.007	1.05	18.0	0.10	12.45	0.01	1.344	2.06	0.39	9.2	89.0	1.8	-3.55	0.80	0.75	1.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	148347	6249	82	4594	197	837	0	logfile
✔	6VWL	21420	2023-08-23	2020-02-20	3.1	3.37	—	3.0	0.005	0.62	0.0	0.04	13.89	0.00	1.922	7.24	1.40	4.2	95.7	0.0	-2.42	0.82	0.85	2.58	3.0	0.003	0.56	0.0	0.03	15.33	0.00	1.910	12.94	0.39	5.1	94.9	0.0	-0.57	0.53	0.83	0.87	2.05	140603	5383	58	4593	34	0	0	logfile
✔	6VWN	21422	2023-08-23	2020-02-20	3.4	3.71	—	3.2	0.002	0.58	0.0	0.03	14.91	0.00	1.951	7.12	3.85	4.3	95.7	0.0	-3.14	0.83	0.82	1.13	3.2	0.004	0.63	0.0	0.03	16.38	0.00	1.849	16.56	0.58	6.4	93.6	0.0	-1.32	1.24	0.84	0.87	1.12	140036	5341	57	4580	55	0	0	logfile
✔	5NJT	3656	2023-08-18	2017-03-29	3.8	4.18	4.07	4.1	0.008	1.18	0.0	0.06	17.85	0.01	1.178	8.95	1.58	14.2	85.2	0.6	-5.34	0.76	0.78	1.08	4.1	0.003	0.72	0.0	0.04	18.11	0.00	1.711	20.44	1.06	11.2	88.7	0.1	-2.53	0.57	0.77	0.80	0.80	133097	5596	51	4579	0	0	0	logfile
✔	5Li0	4050	2023-08-24	2016-07-13	3.8	3.91	—	3.8	0.014	1.18	1.0	0.05	14.64	0.01	1.920	5.40	0.20	14.9	84.7	0.5	-5.64	0.75	0.79	1.99	3.8	0.006	0.75	0.0	0.04	15.26	0.00	1.344	14.34	0.77	11.1	88.8	0.1	-2.61	0.71	0.75	0.81	1.15	140825	5396	58	4575	41	162	0	logfile
✔	6HRM	0261	2023-08-27	2018-09-27	2.96	3.03	—	3.0	0.010	1.02	0.0	0.17	14.98	0.02	2.029	3.00	0.49	5.2	94.8	0.1	-4.48	0.73	0.83	3.89	3.0	0.005	0.69	0.0	0.04	15.37	0.01	1.856	6.90	3.20	5.0	94.9	0.0	-1.36	1.14	0.72	0.84	2.99	145179	5972	64	4570	438	2	0	logfile
✔	5ND9	3625	2023-08-24	2017-03-07	3.7	3.83	—	3.7	0.011	1.19	1.0	0.06	15.82	0.01	0.889	8.98	1.12	19.3	80.1	0.6	-5.81	0.76	0.77	1.23	3.9	0.003	0.67	0.0	0.03	15.69	0.01	2.074	16.26	0.80	12.1	87.8	0.0	-2.99	1.33	0.78	0.81	0.84	141051	5461	52	4569	0	0	0	logfile
✔	5ND8	3624	2023-08-24	2017-03-07	3.7	3.81	—	3.7	0.009	1.03	1.0	0.05	14.85	0.01	1.019	7.55	0.73	17.3	82.1	0.6	-5.61	0.77	0.77	1.17	3.7	0.003	0.65	0.0	0.03	15.24	0.00	2.007	16.09	0.86	10.7	89.3	0.1	-2.72	1.30	0.80	0.82	1.16	141043	5462	52	4568	0	0	0	logfile
✔	6WNV	21857	2023-08-25	2020-04-23	3.5	4.19	3.77	3.3	0.007	0.96	0.0	0.08	13.84	0.01	2.243	12.54	0.89	13.0	85.4	1.6	-5.34	0.88	0.85	1.23	3.3	0.005	0.71	0.0	0.04	16.27	0.00	1.941	24.62	0.81	11.8	87.9	0.2	-2.83	0.65	0.89	0.87	0.94	143036	5782	52	4564	0	0	0	logfile
✔	5NGM	3640	2023-08-24	2017-03-18	2.9	3.05	—	3.0	0.006	0.86	0.0	0.05	17.23	0.01	0.270	7.58	0.81	8.3	91.7	0.0	-4.79	0.70	0.72	2.80	3.0	0.005	0.63	0.0	0.04	17.58	0.00	1.847	11.83	4.43	6.7	93.3	0.0	-1.89	0.66	0.78	0.85	2.33	140965	5610	57	4559	205	0	0	logfile
✔	6S0X	10076	2023-08-24	2019-06-18	2.425	2.50	—	2.5	0.021	2.13	0.0	0.11	21.61	0.01	0.917	12.73	19.66	9.7	90.2	0.1	-4.36	0.60	0.63	2.41	2.5	0.006	1.01	0.0	0.06	20.43	0.01	1.508	19.66	6.55	8.9	91.0	0.0	-2.03	0.70	0.65	0.65	2.44	140672	5589	53	4559	1	0	0	logfile
✔	7oTC	13058	2023-08-30	2021-06-10	2.9	3.10	—	3.1	0.005	0.71	1.0	0.03	13.78	0.02	1.846	9.04	0.04	3.6	96.3	0.1	-0.49	0.73	0.80	2.51	3.1	0.004	0.65	0.0	0.04	14.62	0.01	1.907	10.46	2.80	3.5	96.5	0.0	-0.30	1.17	0.78	0.86	2.50	147132	6239	64	4557	305	0	0	logfile
✔	7UPH	26666	2023-08-24	2022-04-15	4.18	5.35	4.33	4.2	0.007	1.00	1.0	0.05	18.96	0.02	1.193	122.79	0.02	12.5	86.5	1.0	-2.90	0.63	0.35	—	4.3	0.007	0.88	1.0	0.04	18.39	0.01	1.165	109.33	0.02	15.7	83.6	0.7	-2.80	1.34	0.87	0.78	—	141080	5442	49	4556	0	0	625	logfile
✔	6GXP	0083	2023-08-30	2018-06-27	4.4	5.60	—	5.1	0.003	0.80	6.0	0.04	14.00	0.01	1.608	5.45	0.27	8.3	91.2	0.5	-4.12	0.84	0.79	—	5.0	0.005	0.74	0.0	0.04	16.15	0.01	1.967	36.94	0.02	11.1	88.7	0.1	-2.14	1.96	0.87	0.85	—	147637	6392	56	4555	1	0	0	logfile
✔	8AM9	15523	2023-08-25	2022-08-03	2.8	2.46	2.69	2.6	0.006	1.01	0.0	0.05	15.06	0.03	1.779	5.74	3.55	3.8	95.9	0.3	-1.06	0.75	0.81	4.19	2.6	0.005	0.75	0.0	0.04	15.37	0.01	1.789	9.86	3.70	3.8	96.1	0.0	-0.44	1.22	0.77	0.84	3.77	142036	5606	67	4554	297	2	0	logfile
✔	8AKN	15488	2023-08-29	2022-07-30	2.3	1.94	2.20	2.2	0.013	1.78	0.0	0.17	14.48	0.02	1.528	3.25	2.19	5.9	93.2	0.9	-3.31	0.61	0.80	5.18	2.1	0.005	0.79	0.0	0.04	15.02	0.01	1.767	7.21	2.33	2.6	97.3	0.1	-0.01	1.22	0.72	0.85	4.95	146513	5960	103	4552	309	1754	0	logfile
✔	7P7U	13245	2023-08-23	2021-07-20	3.1	3.56	3.06	2.0	0.004	0.52	0.0	0.05	13.97	0.00	1.724	6.20	0.42	2.6	97.4	0.1	1.02	0.89	0.90	3.54	2.0	0.006	0.60	0.0	0.04	14.50	0.00	1.821	10.62	0.36	2.9	97.1	0.0	0.84	0.38	0.89	0.91	3.18	139826	5337	64	4549	344	0	0	logfile

• ← previous
• Page 4 of 542
• next →