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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6WDC | 21631 | 2022-05-22 | 2020-03-31 | 4.2 | 4.07 | 4.55 | 3.9 | 0.006 | 1.01 | 0.0 | 0.08 | 13.38 | 0.01 | 2.262 | 11.91 | 1.14 | 13.3 | 84.6 | 2.1 | -5.10 | 0.77 | 0.73 | — | 3.9 | 0.005 | 0.82 | 0.0 | 0.04 | 16.57 | 0.01 | 1.982 | 31.11 | 0.02 | 13.2 | 86.7 | 0.1 | -3.37 | 0.84 | 0.80 | 0.76 | — | 150149 | 6024 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 6WDi | 21637 | 2022-05-21 | 2020-03-31 | 4.0 | 4.30 | 4.78 | 4.1 | 0.006 | 0.98 | 0.0 | 0.08 | 13.16 | 0.01 | 2.280 | 9.92 | 0.49 | 12.5 | 85.9 | 1.6 | -4.84 | 0.77 | 0.71 | — | 4.1 | 0.006 | 0.84 | 1.0 | 0.04 | 17.26 | 0.01 | 1.956 | 30.28 | 0.76 | 11.7 | 88.2 | 0.1 | -3.28 | 0.86 | 0.81 | 0.75 | — | 149628 | 5954 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 6WDB | 21630 | 2022-05-22 | 2020-03-31 | 4.0 | 4.30 | 5.11 | 4.1 | 0.006 | 0.99 | 0.0 | 0.08 | 13.33 | 0.01 | 2.211 | 11.49 | 0.77 | 11.9 | 86.2 | 1.9 | -4.97 | 0.78 | 0.72 | — | 4.1 | 0.007 | 0.92 | 2.0 | 0.04 | 17.49 | 0.01 | 1.940 | 38.64 | 1.20 | 13.5 | 86.3 | 0.2 | -3.34 | 0.89 | 0.82 | 0.77 | — | 150149 | 6024 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 5ZEP | 6921 | 2022-05-23 | 2018-02-27 | 3.4 | 5.11 | — | 4.5 | 0.010 | 1.18 | 5.0 | 0.06 | 16.72 | 0.01 | 1.089 | 21.21 | 3.06 | 8.5 | 90.3 | 1.3 | -3.96 | 0.70 | 0.53 | 0.11 | 4.5 | 0.005 | 0.79 | 1.0 | 0.04 | 17.96 | 0.01 | 1.949 | 28.34 | 0.79 | 7.6 | 92.2 | 0.2 | -1.82 | 1.67 | 0.90 | 0.86 | 0.20 | 152451 | 6193 | 58 | 4802 | 262 | 0 | 0 | logfile |
✔ | 5WFK | 8828 | 2022-05-24 | 2017-07-12 | 3.4 | 3.64 | 3.59 | 3.6 | 0.008 | 1.13 | 3.0 | 0.10 | 17.64 | 0.02 | 1.013 | 3.77 | 3.19 | 9.7 | 88.0 | 2.3 | -4.14 | 0.77 | 0.78 | 1.88 | 3.6 | 0.007 | 0.87 | 0.0 | 0.04 | 17.07 | 0.01 | 1.732 | 15.53 | 1.34 | 10.1 | 89.3 | 0.6 | -2.02 | 3.36 | 0.82 | 0.83 | 1.56 | 154325 | 6324 | 113 | 4802 | 1415 | 419 | 0 | logfile |
✔ | 5WE4 | 8814 | 2022-05-25 | 2017-07-07 | 3.1 | 3.04 | 3.02 | 3.0 | 0.008 | 1.16 | 3.0 | 0.10 | 17.51 | 0.02 | 1.575 | 3.80 | 3.52 | 9.8 | 87.9 | 2.3 | -4.03 | 0.78 | 0.81 | 2.62 | 3.0 | 0.009 | 0.94 | 0.0 | 0.05 | 17.15 | 0.01 | 0.977 | 12.76 | 0.99 | 9.2 | 90.2 | 0.6 | -2.13 | 3.97 | 0.83 | 0.82 | 2.48 | 155067 | 6324 | 117 | 4802 | 1620 | 996 | 0 | logfile |
✔ | 5WFS | 8829 | 2022-05-25 | 2017-07-12 | 3.0 | 3.09 | 3.13 | 3.0 | 0.008 | 1.18 | 2.0 | 0.10 | 18.12 | 0.02 | 1.324 | 4.25 | 3.10 | 9.3 | 88.2 | 2.4 | -4.11 | 0.73 | 0.77 | 2.42 | 3.0 | 0.006 | 0.84 | 0.0 | 0.04 | 17.51 | 0.01 | 1.080 | 12.75 | 3.60 | 8.3 | 91.1 | 0.5 | -1.91 | 0.63 | 0.83 | 0.84 | 2.24 | 155100 | 6324 | 114 | 4802 | 1479 | 1175 | 0 | logfile |
✔ | 5ZEB | 6920 | 2022-05-22 | 2018-02-27 | 3.4 | 3.46 | — | 3.4 | 0.010 | 1.18 | 2.0 | 0.06 | 16.63 | 0.01 | 1.088 | 18.36 | 3.23 | 8.4 | 90.3 | 1.4 | -3.95 | 0.79 | 0.77 | 1.84 | 3.4 | 0.007 | 0.75 | 1.0 | 0.04 | 16.49 | 0.01 | 1.644 | 14.56 | 0.36 | 8.2 | 91.5 | 0.3 | -1.49 | 4.01 | 0.81 | 0.82 | 1.66 | 150328 | 6095 | 56 | 4802 | 0 | 0 | 0 | logfile |
✔ | 5WDT | 8813 | 2022-05-25 | 2017-07-06 | 3.0 | 3.20 | 3.19 | 3.2 | 0.008 | 1.15 | 2.0 | 0.10 | 17.68 | 0.02 | 1.527 | 4.78 | 3.29 | 9.7 | 88.1 | 2.3 | -4.08 | 0.77 | 0.80 | 2.46 | 3.1 | 0.009 | 0.93 | 0.0 | 0.05 | 17.21 | 0.01 | 1.642 | 12.03 | 4.67 | 9.6 | 89.9 | 0.6 | -1.85 | 3.20 | 0.85 | 0.86 | 2.43 | 155275 | 6324 | 125 | 4802 | 1910 | 920 | 0 | logfile |
✔ | 5WF0 | 8826 | 2022-05-24 | 2017-07-11 | 3.6 | 3.35 | 3.39 | 3.3 | 0.008 | 1.13 | 3.0 | 0.10 | 17.65 | 0.02 | 0.789 | 3.33 | 4.47 | 9.7 | 87.8 | 2.4 | -4.19 | 0.75 | 0.77 | 2.17 | 3.3 | 0.006 | 0.84 | 2.0 | 0.04 | 17.02 | 0.01 | 1.784 | 14.05 | 0.14 | 8.8 | 90.6 | 0.6 | -1.98 | 1.19 | 0.80 | 0.79 | 2.01 | 154600 | 6324 | 110 | 4802 | 1486 | 676 | 0 | logfile |
✔ | 5WE6 | 8815 | 2022-05-23 | 2017-07-07 | 3.4 | 3.36 | 3.38 | 3.3 | 0.008 | 1.13 | 2.0 | 0.10 | 17.08 | 0.02 | 1.679 | 1.98 | 2.48 | 10.3 | 87.3 | 2.4 | -4.31 | 0.77 | 0.80 | 2.33 | 3.3 | 0.007 | 0.82 | 1.0 | 0.04 | 16.60 | 0.01 | 1.705 | 10.96 | 0.15 | 8.9 | 90.6 | 0.5 | -2.03 | 1.90 | 0.83 | 0.83 | 1.72 | 153233 | 6322 | 97 | 4801 | 671 | 153 | 0 | logfile |
✔ | 3JCE | 6550 | 2022-05-24 | 2015-12-01 | 3.2 | 4.36 | — | 14.0 | 0.008 | 0.88 | 0.0 | 0.04 | 14.83 | 0.00 | 1.106 | 32.70 | 0.47 | 10.4 | 84.8 | 4.8 | -2.93 | 0.33 | 0.04 | 0.16 | 3.2 | 0.007 | 1.06 | 3.0 | 0.05 | 17.20 | 0.01 | 1.577 | 41.40 | 0.19 | 11.5 | 87.2 | 1.3 | -3.17 | 1.17 | 0.63 | 0.30 | 0.33 | 154017 | 6546 | 59 | 4798 | 2 | 0 | 0 | logfile |
✔ | 5iQR | 8107 | 2022-05-24 | 2016-03-11 | 3.0 | 3.10 | 3.03 | 3.1 | 0.008 | 1.25 | 41.0 | 0.10 | 17.19 | 0.02 | 0.899 | 7.55 | 6.07 | 7.5 | 91.0 | 1.5 | -2.52 | 0.76 | 0.81 | 1.93 | 3.0 | 0.006 | 0.84 | 1.0 | 0.04 | 16.85 | 0.01 | 1.093 | 16.86 | 3.60 | 5.9 | 93.8 | 0.2 | -1.10 | 1.64 | 0.82 | 0.87 | 1.98 | 154519 | 6570 | 74 | 4794 | 303 | 2 | 0 | logfile |
✔ | 7B5K | 12035 | 2022-05-21 | 2020-12-03 | 2.9 | 2.60 | 2.95 | 2.8 | 0.006 | 0.90 | 0.0 | 0.05 | 14.17 | 0.02 | 1.504 | 11.20 | 0.45 | 3.9 | 95.9 | 0.1 | -3.45 | 0.76 | 0.80 | 3.32 | 2.8 | 0.005 | 0.75 | 1.0 | 0.05 | 14.92 | 0.01 | 1.419 | 6.80 | 2.41 | 4.3 | 95.6 | 0.0 | -0.49 | 0.42 | 0.77 | 0.82 | 2.86 | 148576 | 5684 | 80 | 4790 | 362 | 854 | 0 | logfile |
✔ | 5JTE | 8175 | 2022-05-20 | 2016-05-09 | 3.6 | 3.13 | — | 3.2 | 0.015 | 1.75 | 0.0 | 0.07 | 12.22 | 0.01 | 1.432 | 6.32 | 0.00 | 7.4 | 90.0 | 2.7 | -1.94 | 0.53 | 0.56 | 0.78 | 3.1 | 0.004 | 0.86 | 0.0 | 0.04 | 16.18 | 0.01 | 1.579 | 18.21 | 0.24 | 9.6 | 89.6 | 0.8 | -2.86 | 1.45 | 0.58 | 0.68 | 1.21 | 146760 | 5625 | 59 | 4786 | 1 | 0 | 0 | logfile |
✔ | 5LZD | 4124 | 2022-05-23 | 2016-09-29 | 3.4 | 3.48 | 3.51 | 3.4 | 0.009 | 1.23 | 9.0 | 0.08 | 13.74 | 0.02 | 2.023 | 6.20 | 0.71 | 7.6 | 91.0 | 1.4 | -3.90 | 0.75 | 0.86 | 2.27 | 3.4 | 0.004 | 0.71 | 0.0 | 0.03 | 14.81 | 0.01 | 1.873 | 13.18 | 1.09 | 7.9 | 91.8 | 0.3 | -1.78 | 0.57 | 0.75 | 0.85 | 1.51 | 153177 | 6439 | 68 | 4785 | 152 | 2 | 0 | logfile |
✔ | 5LZC | 4123 | 2022-05-23 | 2016-09-29 | 4.8 | 5.11 | 5.27 | 4.8 | 0.009 | 1.21 | 10.0 | 0.08 | 12.67 | 0.02 | 1.994 | 5.33 | 0.11 | 5.7 | 92.4 | 1.8 | -1.87 | 0.82 | 0.82 | — | 4.8 | 0.004 | 0.76 | 1.0 | 0.03 | 14.83 | 0.01 | 1.933 | 25.21 | 0.02 | 7.7 | 91.9 | 0.4 | -1.93 | 1.42 | 0.83 | 0.83 | — | 152981 | 6432 | 64 | 4785 | 5 | 2 | 0 | logfile |
✔ | 5LZE | 4125 | 2022-05-20 | 2016-09-29 | 3.5 | 3.59 | 3.51 | 3.5 | 0.012 | 1.24 | 14.0 | 0.08 | 14.21 | 0.02 | 2.158 | 4.01 | 0.72 | 7.7 | 90.1 | 2.2 | -3.34 | 0.76 | 0.87 | 2.26 | 3.5 | 0.004 | 0.71 | 0.0 | 0.04 | 15.53 | 0.01 | 2.077 | 13.21 | 0.95 | 7.8 | 91.8 | 0.4 | -1.27 | 0.66 | 0.75 | 0.84 | 1.77 | 148018 | 5817 | 59 | 4782 | 2 | 0 | 0 | logfile |
✔ | 5LZF | 4126 | 2022-05-20 | 2016-09-29 | 4.6 | 4.86 | 4.79 | 4.6 | 0.008 | 1.17 | 5.0 | 0.08 | 14.20 | 0.02 | 2.141 | 4.77 | 0.02 | 7.1 | 90.8 | 2.1 | -2.74 | 0.83 | 0.85 | — | 4.6 | 0.003 | 0.75 | 0.0 | 0.04 | 15.92 | 0.01 | 2.000 | 24.18 | 0.04 | 7.9 | 91.7 | 0.5 | -1.79 | 2.47 | 0.83 | 0.85 | — | 148005 | 5824 | 58 | 4779 | 2 | 0 | 0 | logfile |
✔ | 6HTQ | 0270 | 2022-05-20 | 2018-10-04 | 4.5 | 4.18 | — | 4.1 | 0.008 | 0.89 | 0.0 | 0.04 | 17.41 | 0.01 | 2.213 | 8.13 | 0.32 | 10.3 | 89.4 | 0.3 | -4.50 | 0.83 | 0.79 | — | 4.1 | 0.005 | 0.75 | 0.0 | 0.04 | 17.96 | 0.01 | 1.979 | 24.57 | 0.06 | 12.2 | 87.7 | 0.1 | -2.73 | 0.75 | 0.83 | 0.79 | — | 146680 | 5640 | 53 | 4770 | 0 | 0 | 0 | logfile |