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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5ZEB | 6920 | 2024-03-26 | 2018-02-27 | 3.4 | 3.46 | — | 3.4 | 0.010 | 1.18 | 2.0 | 0.06 | 24.03 | 0.01 | 1.088 | 18.34 | 3.23 | 8.4 | 90.3 | 1.4 | -3.95 | 0.79 | 0.77 | 1.84 | 3.4 | 0.007 | 0.80 | 0.0 | 0.04 | 23.71 | 0.01 | 1.956 | 14.34 | 3.86 | 9.4 | 90.3 | 0.3 | -1.56 | 4.01 | 0.82 | 0.84 | 1.63 | 150328 | 6095 | 56 | 4802 | 0 | 0 | 0 | logfile |
✔ | 5ZEP | 6921 | 2024-03-01 | 2018-02-27 | 3.4 | 5.11 | — | 4.5 | 0.010 | 1.18 | 5.0 | 0.06 | 24.04 | 0.01 | 1.089 | 21.16 | 3.06 | 8.5 | 90.3 | 1.3 | -3.96 | 0.70 | 0.53 | 0.11 | 4.5 | 0.006 | 0.79 | 2.0 | 0.04 | 24.61 | 0.01 | 1.879 | 28.60 | 4.65 | 7.3 | 92.5 | 0.2 | -1.56 | 1.66 | 0.90 | 0.86 | 0.20 | 152451 | 6193 | 58 | 4802 | 262 | 0 | 0 | logfile |
✔ | 5WDT | 8813 | 2024-03-03 | 2017-07-06 | 3.0 | 3.20 | 3.19 | 3.2 | 0.008 | 1.13 | 2.0 | 0.10 | 24.24 | 0.02 | 1.527 | 4.72 | 3.29 | 9.7 | 88.1 | 2.3 | -4.08 | 0.77 | 0.80 | 2.46 | 3.1 | 0.007 | 0.82 | 3.0 | 0.04 | 23.70 | 0.01 | 1.741 | 10.82 | 5.11 | 8.6 | 90.8 | 0.5 | -1.45 | 1.26 | 0.84 | 0.85 | 2.33 | 155275 | 6324 | 125 | 4802 | 1910 | 920 | 0 | logfile |
✔ | 5WFK | 8828 | 2024-03-02 | 2017-07-12 | 3.4 | 3.64 | 3.59 | 3.6 | 0.008 | 1.11 | 3.0 | 0.10 | 24.20 | 0.02 | 1.013 | 3.73 | 3.19 | 9.7 | 88.0 | 2.3 | -4.14 | 0.77 | 0.78 | 1.88 | 3.6 | 0.008 | 0.91 | 0.0 | 0.04 | 23.93 | 0.01 | 1.583 | 16.50 | 7.30 | 11.3 | 88.1 | 0.6 | -2.31 | 1.66 | 0.82 | 0.83 | 1.72 | 154325 | 6324 | 113 | 4802 | 1415 | 419 | 0 | logfile |
✔ | 5WFS | 8829 | 2024-03-02 | 2017-07-12 | 3.0 | 3.09 | 3.13 | 3.0 | 0.008 | 1.16 | 2.0 | 0.10 | 24.59 | 0.02 | 1.324 | 4.18 | 3.10 | 9.3 | 88.2 | 2.4 | -4.11 | 0.73 | 0.77 | 2.42 | 3.0 | 0.006 | 0.84 | 1.0 | 0.04 | 24.01 | 0.01 | 1.031 | 12.54 | 4.92 | 8.9 | 90.5 | 0.6 | -1.93 | 1.52 | 0.84 | 0.85 | 2.39 | 155100 | 6324 | 114 | 4802 | 1479 | 1175 | 0 | logfile |
✔ | 5WE4 | 8814 | 2024-03-02 | 2017-07-07 | 3.1 | 3.04 | 3.02 | 3.0 | 0.008 | 1.14 | 3.0 | 0.10 | 24.21 | 0.02 | 1.575 | 3.75 | 3.52 | 9.8 | 87.9 | 2.3 | -4.03 | 0.78 | 0.81 | 2.62 | 3.0 | 0.005 | 0.78 | 0.0 | 0.04 | 23.77 | 0.01 | 1.021 | 11.61 | 5.67 | 8.3 | 91.2 | 0.5 | -1.85 | 3.97 | 0.84 | 0.83 | 2.36 | 155067 | 6324 | 117 | 4802 | 1620 | 996 | 0 | logfile |
✔ | 5WF0 | 8826 | 2024-03-02 | 2017-07-11 | 3.6 | 3.35 | 3.39 | 3.3 | 0.008 | 1.12 | 3.0 | 0.10 | 24.25 | 0.02 | 0.789 | 3.28 | 4.47 | 9.7 | 87.8 | 2.4 | -4.19 | 0.75 | 0.77 | 2.17 | 3.3 | 0.007 | 0.84 | 0.0 | 0.04 | 23.77 | 0.01 | 1.731 | 13.45 | 4.86 | 9.3 | 90.1 | 0.6 | -1.95 | 3.01 | 0.80 | 0.79 | 2.05 | 154600 | 6324 | 110 | 4802 | 1486 | 676 | 0 | logfile |
✔ | 5WE6 | 8815 | 2024-03-01 | 2017-07-07 | 3.4 | 3.36 | 3.38 | 3.3 | 0.008 | 1.11 | 2.0 | 0.10 | 23.94 | 0.02 | 1.679 | 1.92 | 2.48 | 10.3 | 87.3 | 2.4 | -4.31 | 0.77 | 0.80 | 2.33 | 3.3 | 0.004 | 0.71 | 1.0 | 0.03 | 23.39 | 0.01 | 1.860 | 10.29 | 4.30 | 8.2 | 91.3 | 0.5 | -1.65 | 1.90 | 0.83 | 0.84 | 1.75 | 153233 | 6322 | 97 | 4801 | 671 | 153 | 0 | logfile |
✔ | 3JCE | 6550 | 2024-03-02 | 2015-12-01 | 3.2 | 4.36 | — | 14.0 | 0.008 | 0.88 | 0.0 | 0.04 | 22.68 | 0.00 | 1.106 | 32.64 | 0.47 | 10.4 | 84.8 | 4.8 | -2.93 | 0.33 | 0.04 | 0.16 | 3.1 | 0.006 | 1.17 | 5.0 | 0.05 | 25.14 | 0.01 | 1.590 | 49.53 | 2.65 | 13.3 | 85.5 | 1.2 | -3.72 | 1.89 | 0.70 | 0.41 | 0.15 | 154017 | 6546 | 59 | 4798 | 2 | 0 | 0 | logfile |
✔ | 5iQR | 8107 | 2024-03-02 | 2016-03-11 | 3.0 | 3.10 | 3.03 | 3.1 | 0.008 | 1.25 | 41.0 | 0.10 | 24.24 | 0.02 | 0.899 | 7.48 | 6.07 | 7.5 | 91.0 | 1.5 | -2.52 | 0.76 | 0.81 | 1.93 | 3.0 | 0.003 | 0.68 | 0.0 | 0.03 | 23.77 | 0.01 | 1.070 | 14.69 | 4.52 | 5.3 | 94.4 | 0.2 | -0.61 | 2.06 | 0.81 | 0.86 | 1.86 | 154519 | 6570 | 74 | 4794 | 303 | 2 | 0 | logfile |
✔ | 7B5K | 12035 | 2024-03-24 | 2020-12-03 | 2.9 | 2.60 | 2.95 | 2.8 | 0.006 | 0.90 | 0.0 | 0.05 | 22.65 | 0.02 | 1.504 | 11.12 | 0.45 | 3.9 | 95.9 | 0.1 | -3.45 | 0.76 | 0.80 | 3.32 | 2.8 | 0.005 | 0.72 | 0.0 | 0.05 | 22.64 | 0.01 | 1.408 | 6.52 | 3.81 | 4.6 | 95.4 | 0.0 | -0.49 | 0.42 | 0.78 | 0.83 | 2.83 | 148576 | 5684 | 80 | 4790 | 362 | 854 | 0 | logfile |
✔ | 8V9K | 43075 | 2024-03-01 | 2023-12-08 | 3.1 | 4.08 | 3.09 | 3.2 | 0.003 | 0.54 | 0.0 | 0.03 | 23.07 | 0.01 | 2.059 | 7.46 | 0.00 | 4.3 | 95.6 | 0.0 | -1.26 | 0.87 | 0.78 | 2.34 | 3.2 | 0.005 | 0.65 | 0.0 | 0.04 | 23.13 | 0.00 | 1.870 | 12.86 | 3.58 | 5.0 | 94.9 | 0.1 | -0.38 | 0.50 | 0.93 | 0.90 | 2.15 | 153253 | 6559 | 61 | 4787 | 2 | 0 | 0 | logfile |
✔ | 5JTE | 8175 | 2024-03-23 | 2016-05-09 | 3.6 | 3.13 | — | 3.2 | 0.015 | 1.75 | 0.0 | 0.07 | 22.20 | 0.01 | 1.432 | 6.25 | 0.00 | 7.4 | 90.0 | 2.7 | -1.94 | 0.53 | 0.56 | 0.78 | 3.1 | 0.004 | 0.70 | 1.0 | 0.04 | 23.06 | 0.01 | 1.981 | 14.30 | 3.57 | 7.7 | 91.6 | 0.7 | -2.08 | 1.46 | 0.58 | 0.66 | 1.06 | 146760 | 5625 | 59 | 4786 | 1 | 0 | 0 | logfile |
✔ | 5LZD | 4124 | 2024-03-01 | 2016-09-29 | 3.4 | 3.48 | 3.51 | 3.4 | 0.009 | 1.23 | 9.0 | 0.08 | 22.46 | 0.02 | 2.023 | 6.14 | 0.71 | 7.6 | 91.0 | 1.4 | -3.90 | 0.75 | 0.86 | 2.27 | 3.4 | 0.004 | 0.75 | 1.0 | 0.04 | 22.60 | 0.01 | 1.778 | 13.88 | 8.03 | 8.0 | 91.7 | 0.3 | -1.77 | 0.51 | 0.75 | 0.86 | 1.67 | 153177 | 6439 | 68 | 4785 | 152 | 2 | 0 | logfile |
✔ | 5LZC | 4123 | 2024-03-01 | 2016-09-29 | 4.8 | 5.11 | 5.25 | 4.8 | 0.009 | 1.21 | 10.0 | 0.08 | 22.13 | 0.02 | 1.994 | 5.27 | 0.11 | 5.7 | 92.4 | 1.8 | -1.87 | 0.82 | 0.82 | — | 4.8 | 0.004 | 0.74 | 0.0 | 0.04 | 23.06 | 0.01 | 1.922 | 29.21 | 0.02 | 8.3 | 91.4 | 0.3 | -2.11 | 1.86 | 0.83 | 0.83 | — | 152981 | 6432 | 64 | 4785 | 5 | 2 | 0 | logfile |
✔ | 5LZE | 4125 | 2024-03-24 | 2016-09-29 | 3.5 | 3.59 | 3.51 | 3.5 | 0.012 | 1.24 | 14.0 | 0.08 | 22.97 | 0.02 | 2.158 | 3.96 | 0.72 | 7.7 | 90.1 | 2.2 | -3.34 | 0.76 | 0.87 | 2.26 | 3.5 | 0.005 | 0.73 | 1.0 | 0.04 | 23.01 | 0.01 | 1.758 | 13.25 | 3.93 | 7.7 | 91.8 | 0.4 | -1.01 | 0.63 | 0.75 | 0.85 | 1.72 | 148018 | 5817 | 59 | 4782 | 2 | 0 | 0 | logfile |
✔ | 8V9L | 43076 | 2024-03-03 | 2023-12-08 | 3.0 | 3.32 | 3.04 | 3.2 | 0.005 | 0.62 | 0.0 | 0.04 | 22.85 | 0.01 | 2.110 | 6.59 | 0.00 | 4.6 | 95.3 | 0.1 | -0.83 | 0.78 | 0.88 | 3.22 | 3.2 | 0.006 | 0.66 | 1.0 | 0.04 | 22.89 | 0.01 | 2.085 | 6.79 | 2.47 | 4.8 | 95.2 | 0.0 | -0.34 | 0.25 | 0.78 | 0.89 | 2.76 | 155647 | 6849 | 62 | 4781 | 2 | 0 | 0 | logfile |
✔ | 8V9J | 43074 | 2024-03-01 | 2023-12-08 | 3.1 | 3.49 | 3.07 | 3.3 | 0.004 | 0.56 | 0.0 | 0.04 | 22.95 | 0.01 | 2.090 | 5.54 | 0.00 | 4.4 | 95.6 | 0.0 | -0.82 | 0.89 | 0.90 | 3.08 | 3.3 | 0.007 | 0.65 | 0.0 | 0.04 | 22.83 | 0.01 | 2.055 | 6.87 | 2.49 | 4.9 | 95.1 | 0.0 | 0.15 | 0.93 | 0.88 | 0.92 | 2.64 | 153055 | 6551 | 61 | 4779 | 2 | 0 | 0 | logfile |
✔ | 5LZF | 4126 | 2024-03-24 | 2016-09-29 | 4.6 | 4.86 | 4.79 | 4.6 | 0.008 | 1.16 | 5.0 | 0.08 | 22.92 | 0.02 | 2.141 | 4.71 | 0.02 | 7.1 | 90.8 | 2.1 | -2.74 | 0.83 | 0.85 | — | 4.6 | 0.004 | 0.75 | 0.0 | 0.04 | 23.52 | 0.01 | 1.866 | 26.02 | 0.04 | 8.0 | 91.5 | 0.5 | -1.74 | 2.47 | 0.83 | 0.85 | — | 148005 | 5824 | 58 | 4779 | 2 | 0 | 0 | logfile |
✔ | 6HTQ | 0270 | 2024-03-23 | 2018-10-04 | 4.5 | 4.18 | — | 4.1 | 0.008 | 0.89 | 0.0 | 0.04 | 24.38 | 0.01 | 2.213 | 8.09 | 0.32 | 10.3 | 89.4 | 0.3 | -4.50 | 0.83 | 0.79 | — | 4.1 | 0.007 | 0.89 | 0.0 | 0.04 | 24.54 | 0.01 | 1.962 | 30.43 | 0.06 | 13.1 | 86.7 | 0.2 | -2.93 | 0.73 | 0.83 | 0.80 | — | 146680 | 5640 | 53 | 4770 | 0 | 0 | 0 | logfile |