Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Y7C	10713	2023-04-29	2020-02-28	3.8	5.42	3.84	2.8	0.015	1.44	1.0	0.06	18.67	0.02	0.193	10.34	1.00	14.3	85.4	0.3	-5.44	0.89	0.71	0.41	2.6	0.013	0.93	0.0	0.04	18.90	0.01	1.977	36.16	0.35	15.8	84.1	0.1	-3.77	2.58	0.92	0.79	0.35	79690	5381	34	1735	0	0	0	logfile
✔	6ZoN	11325	2023-04-20	2020-07-07	3.0	3.06	—	2.7	0.010	1.05	0.0	0.06	16.88	0.01	2.199	7.74	0.53	6.3	93.7	0.0	-4.42	0.80	0.72	2.34	2.7	0.005	0.73	0.0	0.04	17.30	0.00	2.022	16.09	2.70	6.1	93.9	0.0	-1.53	0.49	0.84	0.81	1.95	109201	9169	51	1721	183	0	0	logfile
✔	6ZVJ	11458	2023-04-22	2020-07-24	3.8	3.00	—	3.1	0.010	1.33	7.0	0.07	17.39	0.01	1.731	5.46	1.39	0.2	99.8	0.0	-4.19	0.59	0.64	1.31	2.9	0.002	0.65	0.0	0.04	17.29	0.00	1.911	12.28	0.29	4.7	95.3	0.0	-0.88	1.68	0.67	0.75	0.98	115020	10127	55	1720	9	0	0	logfile
✔	7A5J	11645	2023-04-19	2020-08-21	3.1	2.70	3.04	3.0	0.009	0.99	0.0	0.05	17.09	0.01	1.265	4.18	0.84	5.2	94.7	0.2	-4.41	0.63	0.73	2.66	2.9	0.003	0.61	0.0	0.04	17.63	0.00	1.870	9.80	0.57	4.2	95.8	0.0	-0.43	1.38	0.66	0.79	2.47	106132	8540	70	1694	204	0	0	logfile
✔	6GB2	4370	2023-04-21	2018-04-13	3.2	3.20	3.10	3.1	0.007	1.14	0.0	0.05	17.78	0.01	1.865	9.38	10.13	4.0	95.9	0.2	-2.82	0.85	0.89	2.34	3.1	0.004	0.68	0.0	0.04	17.92	0.01	1.852	11.22	0.38	3.7	96.2	0.1	0.45	0.76	0.84	0.89	2.23	111109	9312	78	1687	225	2	0	logfile
✔	6ZV6	11441	2023-04-28	2020-07-24	2.9	3.51	—	3.2	0.008	1.07	0.0	0.05	15.88	0.01	2.116	5.50	0.48	5.7	94.2	0.1	-3.48	0.70	0.83	2.33	3.2	0.004	0.75	0.0	0.04	17.56	0.01	1.984	16.21	2.71	5.8	94.2	0.1	-0.97	1.26	0.71	0.84	1.71	76226	5048	38	1683	5	3	0	logfile
✔	3J7A	2660	2023-04-26	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.56	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.003	0.70	0.0	0.04	18.04	0.01	1.866	17.03	1.05	8.0	90.8	1.2	-1.89	2.71	0.40	0.77	1.02	68866	4106	35	1682	69	0	0	logfile
✔	6EML	3886	2023-04-28	2017-10-02	3.6	3.65	—	3.6	0.014	1.54	11.0	0.10	18.16	0.01	0.382	12.80	1.27	12.5	86.2	1.3	-4.67	0.66	0.77	2.11	3.6	0.004	0.73	0.0	0.04	18.32	0.00	2.083	15.81	0.86	11.5	88.2	0.2	-1.99	0.77	0.67	0.78	1.50	75886	5233	32	1675	0	0	0	logfile
✔	6ZN5	11310	2023-04-29	2020-07-06	3.2	3.14	—	3.1	0.011	1.16	0.0	0.06	17.49	0.01	2.124	5.06	0.53	6.9	92.9	0.1	-4.30	0.80	0.80	2.26	3.1	0.003	0.63	0.0	0.04	17.53	0.00	2.106	10.23	0.53	5.1	94.8	0.0	-1.22	0.45	0.82	0.82	1.93	79377	5478	39	1671	3	0	0	logfile
✔	6ZUo	11440	2023-04-28	2020-07-23	3.1	3.60	—	3.2	0.008	1.11	0.0	0.06	16.01	0.01	2.204	6.23	0.40	5.7	94.2	0.1	-4.11	0.67	0.80	1.80	3.2	0.004	0.76	0.0	0.04	17.62	0.01	2.036	18.20	0.73	5.9	94.1	0.0	-1.26	2.19	0.69	0.81	1.21	77098	5217	38	1665	3	0	0	logfile
✔	7K5i	22681	2023-04-27	2020-09-16	2.9	3.01	—	3.0	0.004	0.63	0.0	0.04	15.79	0.01	2.031	6.52	0.00	3.7	96.3	0.0	-1.25	0.76	0.82	3.57	3.0	0.006	0.71	0.0	0.05	17.06	0.01	2.061	7.09	2.57	4.4	95.6	0.0	-0.63	0.25	0.78	0.83	3.15	74540	4881	40	1665	4	0	0	logfile
✔	6ZLW	11276	2023-04-27	2020-07-01	2.6	2.76	—	2.7	0.008	1.09	0.0	0.06	16.44	0.01	1.859	3.80	0.48	3.7	96.1	0.2	-3.57	0.78	0.82	3.72	2.7	0.003	0.63	0.0	0.04	17.26	0.00	2.027	8.07	2.64	3.4	96.6	0.1	-0.16	1.16	0.79	0.84	3.13	74568	4887	39	1665	3	0	0	logfile
✔	6G5H	4352	2023-04-27	2018-03-29	3.6	3.69	—	3.6	0.011	1.33	2.0	0.07	16.81	0.01	1.511	9.43	1.22	8.6	91.2	0.2	-4.11	0.70	0.80	1.77	3.6	0.005	0.74	0.0	0.04	17.71	0.01	1.970	16.58	0.91	6.3	93.6	0.0	-1.89	1.33	0.70	0.80	1.39	74342	4858	38	1665	3	0	0	logfile
✔	6G5i	4353	2023-04-28	2018-03-29	3.5	3.78	—	3.5	0.009	1.25	1.0	0.06	16.47	0.01	1.824	8.06	0.69	10.1	89.8	0.1	-4.49	0.77	0.73	1.91	3.5	0.003	0.69	0.0	0.04	17.46	0.00	2.051	16.52	0.40	6.5	93.5	0.0	-1.93	1.33	0.82	0.81	1.55	77185	5246	39	1657	3	0	0	logfile
✔	6ZXH	11521	2023-04-28	2020-07-29	2.7	2.64	2.66	2.7	0.012	1.45	0.0	0.06	17.01	0.04	1.930	3.79	0.45	4.1	95.9	0.0	-2.39	0.79	0.82	3.74	2.7	0.007	1.01	0.0	0.04	17.90	0.01	1.847	6.83	1.94	3.7	96.3	0.0	-0.03	0.44	0.81	0.85	3.26	76979	5195	44	1651	135	0	0	logfile
✔	6WDR	21644	2023-04-27	2020-04-01	3.7	3.72	—	3.4	0.013	1.27	2.0	0.07	19.74	0.01	2.181	8.79	1.35	11.7	88.2	0.1	-5.01	0.85	0.81	1.85	3.4	0.006	0.72	0.0	0.04	19.35	0.00	2.049	15.61	0.55	7.1	92.8	0.0	-2.66	1.85	0.85	0.82	1.76	74473	4984	32	1647	0	0	0	logfile
✔	7R4X	14317	2023-04-28	2022-02-09	2.15	1.94	—	2.1	0.012	1.13	0.0	0.06	16.98	0.04	1.443	4.90	4.12	3.8	96.2	0.1	-0.66	0.70	0.73	4.07	2.0	0.005	1.06	0.0	0.04	17.40	0.01	1.810	12.10	2.57	3.6	96.4	0.0	0.26	0.92	0.77	0.85	4.42	77937	4792	77	1646	174	4117	0	logfile
✔	8EUP	24410	2023-04-29	2022-10-19	3.1	3.34	—	3.2	0.004	0.56	0.0	0.04	17.14	0.00	2.108	12.23	0.40	5.3	94.6	0.1	-0.11	0.72	0.69	1.81	3.2	0.002	0.55	0.0	0.03	17.05	0.00	1.996	13.56	0.35	4.1	95.8	0.1	0.45	0.40	0.73	0.71	1.64	78722	6156	41	1623	1	0	0	logfile
✘	6o7K	0643	2023-04-21	2019-03-08	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-2.76	—	—	—	4.3	0.004	0.69	0.0	0.04	15.44	0.00	2.073	20.70	0.00	8.3	91.3	0.4	-1.56	—	0.90	0.84	—	57748	2934	25	1622	0	0	0	logfile
✔	5XXU	6780	2023-04-26	2017-07-05	3.35	3.41	—	3.4	0.009	1.11	2.0	0.09	17.75	0.00	1.315	13.35	3.58	7.0	90.4	2.6	-3.13	0.68	0.74	2.19	3.4	0.005	0.75	0.0	0.04	17.70	0.01	2.029	11.99	1.11	7.9	91.3	0.8	-1.56	1.56	0.82	0.86	1.87	68955	4381	34	1619	0	0	0	logfile

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