Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZS5	14926	2023-08-17	2022-05-06	3.2	3.53	3.32	3.3	0.002	0.55	0.0	0.03	16.11	0.00	1.329	12.45	0.02	2.5	97.1	0.4	-1.60	0.84	0.78	1.80	3.3	0.008	0.84	0.0	0.05	17.43	0.01	1.851	20.60	1.03	9.6	90.0	0.4	-1.91	0.41	0.86	0.82	1.68	127849	6416	50	3603	24	0	0	logfile
✔	8FLF	29277	2023-08-19	2022-12-21	2.65	2.77	2.75	2.9	0.007	0.77	0.0	0.04	13.76	0.03	1.925	1.99	0.00	1.6	98.4	0.0	0.65	0.82	0.84	4.10	2.9	0.005	0.75	0.0	0.04	15.21	0.01	1.873	5.53	2.15	2.1	97.9	0.0	0.54	1.16	0.83	0.87	3.63	134730	7133	64	3599	93	0	0	logfile
✔	5GAK	3227	2023-08-17	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.89	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	3.9	0.003	0.72	0.0	0.04	18.78	0.00	2.007	19.48	0.38	8.0	91.6	0.4	-2.15	1.90	0.32	0.21	0.08	128975	6434	50	3597	234	0	0	logfile
✔	8BiP	16086	2023-08-19	2022-11-02	3.1	3.81	3.14	3.3	0.003	0.54	1.0	0.03	15.18	0.00	1.794	11.10	0.12	4.7	95.3	0.1	-0.06	0.77	0.88	2.78	3.3	0.004	0.59	0.0	0.04	15.91	0.00	1.852	12.25	0.53	5.5	94.4	0.1	-0.16	0.33	0.77	0.90	2.27	134392	7222	62	3580	234	0	0	logfile
✔	8BJQ	16090	2023-08-24	2022-11-05	3.8	4.31	3.77	3.7	0.005	0.69	1.0	0.04	15.16	0.01	1.017	13.25	0.16	4.4	95.4	0.2	-0.16	0.72	0.78	0.75	3.7	0.005	0.73	0.0	0.04	16.68	0.01	0.949	22.48	0.74	6.6	93.3	0.1	-0.70	1.67	0.74	0.85	0.89	141384	8086	64	3580	211	0	0	logfile
✔	6R86	4752	2023-08-18	2019-03-31	3.4	3.39	—	3.4	0.007	1.07	1.0	0.06	16.69	0.01	2.061	4.55	0.39	7.5	92.2	0.4	-4.05	0.77	0.84	3.15	3.4	0.004	0.65	0.0	0.04	16.55	0.00	1.942	10.27	0.56	7.5	92.3	0.2	-1.22	0.55	0.78	0.86	2.34	132446	7198	49	3539	41	0	0	logfile
✔	6oiG	20077	2023-08-17	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.69	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.010	1.00	6.0	0.05	18.66	0.01	1.416	32.12	0.74	13.7	86.2	0.1	-2.80	3.10	0.89	0.86	0.08	129140	6757	48	3522	116	0	0	logfile
✔	6AZ3	7025	2023-08-17	2017-09-09	2.5	3.08	—	3.1	0.012	1.29	0.0	0.06	16.54	0.03	1.349	4.53	0.96	6.4	93.4	0.2	-4.53	0.54	0.78	5.15	3.1	0.006	0.88	0.0	0.04	17.29	0.01	1.945	8.72	3.08	6.3	93.6	0.1	-1.41	0.34	0.54	0.80	3.89	126561	6390	91	3507	44	1019	0	logfile
✔	5T62	8362	2023-08-18	2016-09-01	3.3	3.38	—	3.4	0.007	1.13	5.0	0.09	17.39	0.01	1.390	1.88	6.32	8.1	89.7	2.2	-4.03	0.68	0.78	3.21	3.3	0.005	0.70	0.0	0.04	16.51	0.01	1.018	5.75	0.60	6.9	92.4	0.6	-1.76	0.71	0.81	0.88	2.51	131766	7061	57	3483	438	6	0	logfile
✔	5T6R	8368	2023-08-17	2016-09-01	4.2	4.31	4.24	4.2	0.007	1.05	1.0	0.09	16.99	0.00	1.229	1.49	5.55	7.5	90.6	1.9	-3.58	0.82	0.80	—	4.2	0.003	0.60	0.0	0.03	15.58	0.00	1.858	10.94	0.02	6.5	93.0	0.5	-1.08	1.57	0.83	0.80	—	126616	6441	51	3483	299	12	0	logfile
✔	6N8N	0373	2023-08-18	2018-11-29	3.8	3.91	—	3.8	0.006	0.89	2.0	0.05	15.10	0.01	1.297	3.58	0.49	6.7	92.8	0.5	-3.90	0.79	0.87	2.98	3.8	0.005	0.68	0.0	0.04	16.03	0.00	2.086	10.29	0.83	8.4	91.5	0.1	-1.16	1.26	0.79	0.87	2.10	131813	7085	48	3482	302	0	0	logfile
✔	4V91	2599	2023-08-16	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	17.94	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.032	1.24	0.0	0.04	17.28	0.01	2.047	15.07	1.04	8.1	91.2	0.7	-2.72	2.02	0.63	0.81	1.43	125665	6450	45	3482	0	0	0	logfile
✔	6N8M	0372	2023-08-17	2018-11-29	3.5	3.75	—	3.6	0.006	0.86	1.0	0.04	14.88	0.01	1.297	2.87	0.43	6.6	93.0	0.4	-4.51	0.81	0.88	3.49	3.6	0.007	0.70	0.0	0.04	16.00	0.00	2.020	8.66	0.65	8.4	91.4	0.2	-1.48	1.24	0.81	0.89	2.52	128867	6708	47	3482	302	0	0	logfile
✔	6N8o	0374	2023-08-19	2018-11-29	3.5	3.74	—	3.6	0.007	0.89	2.0	0.05	14.62	0.01	1.297	2.91	0.56	7.2	92.4	0.4	-4.60	0.82	0.89	3.44	3.6	0.004	0.61	0.0	0.04	15.61	0.00	2.092	7.91	0.46	7.8	92.0	0.2	-1.26	1.99	0.81	0.88	2.56	133453	7292	49	3480	302	0	0	logfile
✔	6N8K	0370	2023-08-18	2018-11-29	3.6	3.80	—	3.7	0.006	0.91	0.0	0.05	15.37	0.01	1.873	3.81	0.51	6.6	93.0	0.4	-4.28	0.79	0.87	2.97	3.7	0.005	0.68	0.0	0.04	16.48	0.00	1.999	10.88	0.82	8.6	91.2	0.1	-1.17	0.65	0.80	0.87	1.96	132821	7231	49	3479	212	0	0	logfile
✔	6N8L	0371	2023-08-18	2018-11-29	3.6	3.79	—	3.7	0.007	0.93	0.0	0.05	15.30	0.01	2.200	3.54	0.64	7.3	92.2	0.5	-4.50	0.80	0.87	3.56	3.7	0.005	0.67	1.0	0.04	16.35	0.01	2.055	10.32	0.69	8.4	91.4	0.2	-1.49	2.29	0.80	0.87	2.37	129926	6884	48	3479	210	0	0	logfile
✔	3J79	2660	2023-08-16	2014-06-02	3.2	3.25	3.13	3.2	0.007	1.31	43.0	0.10	19.59	0.01	1.505	4.40	11.66	7.2	90.4	2.4	-1.45	0.53	0.71	0.94	3.2	0.003	0.64	0.0	0.04	17.82	0.01	1.892	13.81	0.62	5.4	94.1	0.5	-0.13	0.96	0.65	0.85	1.71	124514	6244	55	3460	168	0	0	logfile
✔	6Ri5	4884	2023-08-18	2019-04-23	3.3	3.42	—	3.3	0.016	1.15	6.0	0.07	16.12	0.01	1.267	4.37	1.01	9.6	90.2	0.2	-4.60	0.82	0.81	2.56	3.3	0.003	0.58	0.0	0.03	16.14	0.00	2.072	9.57	0.47	5.5	94.5	0.1	-1.15	0.72	0.84	0.86	2.22	130139	7034	54	3424	217	0	0	logfile
✔	6S05	10071	2023-08-17	2019-06-13	3.9	3.99	—	3.9	0.008	1.03	5.0	0.05	16.94	0.01	0.906	7.79	1.92	9.4	90.4	0.2	-4.72	0.82	0.84	1.89	3.9	0.007	0.75	0.0	0.04	16.93	0.01	2.007	16.08	1.03	10.0	89.9	0.0	-2.47	1.15	0.82	0.84	1.47	129144	6919	53	3423	218	0	0	logfile
✔	6QTZ	4636	2023-08-18	2019-02-26	3.5	3.65	—	3.6	0.006	0.81	8.0	0.04	15.79	0.01	1.165	4.32	0.66	7.3	92.5	0.2	-4.44	0.83	0.84	2.55	3.6	0.002	0.53	0.0	0.03	15.96	0.00	2.060	9.26	0.45	5.4	94.6	0.1	-1.24	0.50	0.84	0.85	1.85	130259	7050	54	3423	217	0	0	logfile

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