The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7ZS5 | 14926 | 2023-08-17 | 2022-05-06 | 3.2 | 3.53 | 3.32 | 3.3 | 0.002 | 0.55 | 0.0 | 0.03 | 16.11 | 0.00 | 1.329 | 12.45 | 0.02 | 2.5 | 97.1 | 0.4 | -1.60 | 0.84 | 0.78 | 1.80 | 3.3 | 0.008 | 0.84 | 0.0 | 0.05 | 17.43 | 0.01 | 1.851 | 20.60 | 1.03 | 9.6 | 90.0 | 0.4 | -1.91 | 0.41 | 0.86 | 0.82 | 1.68 | 127849 | 6416 | 50 | 3603 | 24 | 0 | 0 | logfile |
✔ | 8FLF | 29277 | 2023-08-19 | 2022-12-21 | 2.65 | 2.77 | 2.75 | 2.9 | 0.007 | 0.77 | 0.0 | 0.04 | 13.76 | 0.03 | 1.925 | 1.99 | 0.00 | 1.6 | 98.4 | 0.0 | 0.65 | 0.82 | 0.84 | 4.10 | 2.9 | 0.005 | 0.75 | 0.0 | 0.04 | 15.21 | 0.01 | 1.873 | 5.53 | 2.15 | 2.1 | 97.9 | 0.0 | 0.54 | 1.16 | 0.83 | 0.87 | 3.63 | 134730 | 7133 | 64 | 3599 | 93 | 0 | 0 | logfile |
✔ | 5GAK | 3227 | 2023-08-17 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 20.85 | 0.01 | 0.816 | 23.89 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 18.78 | 0.00 | 2.007 | 19.48 | 0.38 | 8.0 | 91.6 | 0.4 | -2.15 | 1.90 | 0.32 | 0.21 | 0.08 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✔ | 8BiP | 16086 | 2023-08-19 | 2022-11-02 | 3.1 | 3.81 | 3.14 | 3.3 | 0.003 | 0.54 | 1.0 | 0.03 | 15.18 | 0.00 | 1.794 | 11.10 | 0.12 | 4.7 | 95.3 | 0.1 | -0.06 | 0.77 | 0.88 | 2.78 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 15.91 | 0.00 | 1.852 | 12.25 | 0.53 | 5.5 | 94.4 | 0.1 | -0.16 | 0.33 | 0.77 | 0.90 | 2.27 | 134392 | 7222 | 62 | 3580 | 234 | 0 | 0 | logfile |
✔ | 8BJQ | 16090 | 2023-08-24 | 2022-11-05 | 3.8 | 4.31 | 3.77 | 3.7 | 0.005 | 0.69 | 1.0 | 0.04 | 15.16 | 0.01 | 1.017 | 13.25 | 0.16 | 4.4 | 95.4 | 0.2 | -0.16 | 0.72 | 0.78 | 0.75 | 3.7 | 0.005 | 0.73 | 0.0 | 0.04 | 16.68 | 0.01 | 0.949 | 22.48 | 0.74 | 6.6 | 93.3 | 0.1 | -0.70 | 1.67 | 0.74 | 0.85 | 0.89 | 141384 | 8086 | 64 | 3580 | 211 | 0 | 0 | logfile |
✔ | 6R86 | 4752 | 2023-08-18 | 2019-03-31 | 3.4 | 3.39 | — | 3.4 | 0.007 | 1.07 | 1.0 | 0.06 | 16.69 | 0.01 | 2.061 | 4.55 | 0.39 | 7.5 | 92.2 | 0.4 | -4.05 | 0.77 | 0.84 | 3.15 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 16.55 | 0.00 | 1.942 | 10.27 | 0.56 | 7.5 | 92.3 | 0.2 | -1.22 | 0.55 | 0.78 | 0.86 | 2.34 | 132446 | 7198 | 49 | 3539 | 41 | 0 | 0 | logfile |
✔ | 6oiG | 20077 | 2023-08-17 | 2019-04-09 | 3.8 | 5.08 | — | 5.0 | 0.011 | 1.45 | 2.0 | 0.07 | 19.62 | 0.01 | 0.087 | 53.69 | 1.20 | 15.9 | 83.9 | 0.2 | -5.09 | 0.77 | 0.48 | 0.04 | 4.9 | 0.010 | 1.00 | 6.0 | 0.05 | 18.66 | 0.01 | 1.416 | 32.12 | 0.74 | 13.7 | 86.2 | 0.1 | -2.80 | 3.10 | 0.89 | 0.86 | 0.08 | 129140 | 6757 | 48 | 3522 | 116 | 0 | 0 | logfile |
✔ | 6AZ3 | 7025 | 2023-08-17 | 2017-09-09 | 2.5 | 3.08 | — | 3.1 | 0.012 | 1.29 | 0.0 | 0.06 | 16.54 | 0.03 | 1.349 | 4.53 | 0.96 | 6.4 | 93.4 | 0.2 | -4.53 | 0.54 | 0.78 | 5.15 | 3.1 | 0.006 | 0.88 | 0.0 | 0.04 | 17.29 | 0.01 | 1.945 | 8.72 | 3.08 | 6.3 | 93.6 | 0.1 | -1.41 | 0.34 | 0.54 | 0.80 | 3.89 | 126561 | 6390 | 91 | 3507 | 44 | 1019 | 0 | logfile |
✔ | 5T62 | 8362 | 2023-08-18 | 2016-09-01 | 3.3 | 3.38 | — | 3.4 | 0.007 | 1.13 | 5.0 | 0.09 | 17.39 | 0.01 | 1.390 | 1.88 | 6.32 | 8.1 | 89.7 | 2.2 | -4.03 | 0.68 | 0.78 | 3.21 | 3.3 | 0.005 | 0.70 | 0.0 | 0.04 | 16.51 | 0.01 | 1.018 | 5.75 | 0.60 | 6.9 | 92.4 | 0.6 | -1.76 | 0.71 | 0.81 | 0.88 | 2.51 | 131766 | 7061 | 57 | 3483 | 438 | 6 | 0 | logfile |
✔ | 5T6R | 8368 | 2023-08-17 | 2016-09-01 | 4.2 | 4.31 | 4.24 | 4.2 | 0.007 | 1.05 | 1.0 | 0.09 | 16.99 | 0.00 | 1.229 | 1.49 | 5.55 | 7.5 | 90.6 | 1.9 | -3.58 | 0.82 | 0.80 | — | 4.2 | 0.003 | 0.60 | 0.0 | 0.03 | 15.58 | 0.00 | 1.858 | 10.94 | 0.02 | 6.5 | 93.0 | 0.5 | -1.08 | 1.57 | 0.83 | 0.80 | — | 126616 | 6441 | 51 | 3483 | 299 | 12 | 0 | logfile |
✔ | 6N8N | 0373 | 2023-08-18 | 2018-11-29 | 3.8 | 3.91 | — | 3.8 | 0.006 | 0.89 | 2.0 | 0.05 | 15.10 | 0.01 | 1.297 | 3.58 | 0.49 | 6.7 | 92.8 | 0.5 | -3.90 | 0.79 | 0.87 | 2.98 | 3.8 | 0.005 | 0.68 | 0.0 | 0.04 | 16.03 | 0.00 | 2.086 | 10.29 | 0.83 | 8.4 | 91.5 | 0.1 | -1.16 | 1.26 | 0.79 | 0.87 | 2.10 | 131813 | 7085 | 48 | 3482 | 302 | 0 | 0 | logfile |
✔ | 4V91 | 2599 | 2023-08-16 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 20.66 | 0.07 | 0.695 | 17.94 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.032 | 1.24 | 0.0 | 0.04 | 17.28 | 0.01 | 2.047 | 15.07 | 1.04 | 8.1 | 91.2 | 0.7 | -2.72 | 2.02 | 0.63 | 0.81 | 1.43 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✔ | 6N8M | 0372 | 2023-08-17 | 2018-11-29 | 3.5 | 3.75 | — | 3.6 | 0.006 | 0.86 | 1.0 | 0.04 | 14.88 | 0.01 | 1.297 | 2.87 | 0.43 | 6.6 | 93.0 | 0.4 | -4.51 | 0.81 | 0.88 | 3.49 | 3.6 | 0.007 | 0.70 | 0.0 | 0.04 | 16.00 | 0.00 | 2.020 | 8.66 | 0.65 | 8.4 | 91.4 | 0.2 | -1.48 | 1.24 | 0.81 | 0.89 | 2.52 | 128867 | 6708 | 47 | 3482 | 302 | 0 | 0 | logfile |
✔ | 6N8o | 0374 | 2023-08-19 | 2018-11-29 | 3.5 | 3.74 | — | 3.6 | 0.007 | 0.89 | 2.0 | 0.05 | 14.62 | 0.01 | 1.297 | 2.91 | 0.56 | 7.2 | 92.4 | 0.4 | -4.60 | 0.82 | 0.89 | 3.44 | 3.6 | 0.004 | 0.61 | 0.0 | 0.04 | 15.61 | 0.00 | 2.092 | 7.91 | 0.46 | 7.8 | 92.0 | 0.2 | -1.26 | 1.99 | 0.81 | 0.88 | 2.56 | 133453 | 7292 | 49 | 3480 | 302 | 0 | 0 | logfile |
✔ | 6N8K | 0370 | 2023-08-18 | 2018-11-29 | 3.6 | 3.80 | — | 3.7 | 0.006 | 0.91 | 0.0 | 0.05 | 15.37 | 0.01 | 1.873 | 3.81 | 0.51 | 6.6 | 93.0 | 0.4 | -4.28 | 0.79 | 0.87 | 2.97 | 3.7 | 0.005 | 0.68 | 0.0 | 0.04 | 16.48 | 0.00 | 1.999 | 10.88 | 0.82 | 8.6 | 91.2 | 0.1 | -1.17 | 0.65 | 0.80 | 0.87 | 1.96 | 132821 | 7231 | 49 | 3479 | 212 | 0 | 0 | logfile |
✔ | 6N8L | 0371 | 2023-08-18 | 2018-11-29 | 3.6 | 3.79 | — | 3.7 | 0.007 | 0.93 | 0.0 | 0.05 | 15.30 | 0.01 | 2.200 | 3.54 | 0.64 | 7.3 | 92.2 | 0.5 | -4.50 | 0.80 | 0.87 | 3.56 | 3.7 | 0.005 | 0.67 | 1.0 | 0.04 | 16.35 | 0.01 | 2.055 | 10.32 | 0.69 | 8.4 | 91.4 | 0.2 | -1.49 | 2.29 | 0.80 | 0.87 | 2.37 | 129926 | 6884 | 48 | 3479 | 210 | 0 | 0 | logfile |
✔ | 3J79 | 2660 | 2023-08-16 | 2014-06-02 | 3.2 | 3.25 | 3.13 | 3.2 | 0.007 | 1.31 | 43.0 | 0.10 | 19.59 | 0.01 | 1.505 | 4.40 | 11.66 | 7.2 | 90.4 | 2.4 | -1.45 | 0.53 | 0.71 | 0.94 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 17.82 | 0.01 | 1.892 | 13.81 | 0.62 | 5.4 | 94.1 | 0.5 | -0.13 | 0.96 | 0.65 | 0.85 | 1.71 | 124514 | 6244 | 55 | 3460 | 168 | 0 | 0 | logfile |
✔ | 6Ri5 | 4884 | 2023-08-18 | 2019-04-23 | 3.3 | 3.42 | — | 3.3 | 0.016 | 1.15 | 6.0 | 0.07 | 16.12 | 0.01 | 1.267 | 4.37 | 1.01 | 9.6 | 90.2 | 0.2 | -4.60 | 0.82 | 0.81 | 2.56 | 3.3 | 0.003 | 0.58 | 0.0 | 0.03 | 16.14 | 0.00 | 2.072 | 9.57 | 0.47 | 5.5 | 94.5 | 0.1 | -1.15 | 0.72 | 0.84 | 0.86 | 2.22 | 130139 | 7034 | 54 | 3424 | 217 | 0 | 0 | logfile |
✔ | 6S05 | 10071 | 2023-08-17 | 2019-06-13 | 3.9 | 3.99 | — | 3.9 | 0.008 | 1.03 | 5.0 | 0.05 | 16.94 | 0.01 | 0.906 | 7.79 | 1.92 | 9.4 | 90.4 | 0.2 | -4.72 | 0.82 | 0.84 | 1.89 | 3.9 | 0.007 | 0.75 | 0.0 | 0.04 | 16.93 | 0.01 | 2.007 | 16.08 | 1.03 | 10.0 | 89.9 | 0.0 | -2.47 | 1.15 | 0.82 | 0.84 | 1.47 | 129144 | 6919 | 53 | 3423 | 218 | 0 | 0 | logfile |
✔ | 6QTZ | 4636 | 2023-08-18 | 2019-02-26 | 3.5 | 3.65 | — | 3.6 | 0.006 | 0.81 | 8.0 | 0.04 | 15.79 | 0.01 | 1.165 | 4.32 | 0.66 | 7.3 | 92.5 | 0.2 | -4.44 | 0.83 | 0.84 | 2.55 | 3.6 | 0.002 | 0.53 | 0.0 | 0.03 | 15.96 | 0.00 | 2.060 | 9.26 | 0.45 | 5.4 | 94.6 | 0.1 | -1.24 | 0.50 | 0.84 | 0.85 | 1.85 | 130259 | 7050 | 54 | 3423 | 217 | 0 | 0 | logfile |