The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6WDG | 21635 | 2024-03-24 | 2020-03-31 | 3.3 | 3.73 | 3.80 | 3.6 | 0.006 | 0.96 | 0.0 | 0.08 | 22.17 | 0.01 | 1.303 | 12.77 | 1.02 | 12.2 | 85.8 | 2.0 | -4.96 | 0.81 | 0.83 | 1.41 | 3.6 | 0.003 | 0.64 | 0.0 | 0.03 | 23.24 | 0.00 | 2.050 | 17.32 | 5.24 | 9.6 | 90.3 | 0.2 | -2.39 | 0.71 | 0.82 | 0.84 | 1.12 | 148582 | 6025 | 57 | 4733 | 0 | 0 | 0 | logfile |
✔ | 7NSP | 12574 | 2024-03-22 | 2021-03-08 | 3.5 | 3.66 | 3.65 | 3.6 | 0.008 | 1.05 | 2.0 | 0.08 | 23.83 | 0.01 | 1.432 | 5.64 | 0.95 | 8.1 | 91.6 | 0.3 | -4.02 | 0.83 | 0.82 | 1.76 | 3.6 | 0.004 | 0.69 | 0.0 | 0.04 | 23.59 | 0.00 | 1.999 | 13.21 | 5.11 | 8.8 | 91.1 | 0.1 | -1.55 | 0.45 | 0.83 | 0.82 | 1.26 | 146148 | 5691 | 57 | 4733 | 1 | 0 | 0 | logfile |
✔ | 7K55 | 22674 | 2024-03-01 | 2020-09-16 | 3.3 | 3.80 | — | 3.2 | 0.012 | 1.26 | 0.0 | 0.10 | 22.66 | 0.01 | 1.421 | 24.43 | 2.17 | 15.7 | 82.6 | 1.6 | -4.14 | 0.84 | 0.81 | 1.29 | 3.1 | 0.005 | 0.74 | 0.0 | 0.04 | 23.35 | 0.01 | 1.836 | 20.41 | 5.93 | 13.5 | 86.2 | 0.2 | -2.73 | 1.18 | 0.85 | 0.83 | 1.02 | 153368 | 6631 | 62 | 4732 | 2 | 0 | 0 | logfile |
✔ | 7K54 | 22673 | 2024-03-01 | 2020-09-16 | 3.2 | 3.75 | — | 3.1 | 0.011 | 1.17 | 0.0 | 0.09 | 22.57 | 0.01 | 1.400 | 21.96 | 1.81 | 14.1 | 84.3 | 1.6 | -3.93 | 0.86 | 0.83 | 1.65 | 3.1 | 0.007 | 0.78 | 1.0 | 0.04 | 23.35 | 0.01 | 1.963 | 20.48 | 5.84 | 13.2 | 86.7 | 0.1 | -2.36 | 3.22 | 0.87 | 0.86 | 1.44 | 153368 | 6631 | 62 | 4732 | 2 | 0 | 0 | logfile |
✔ | 7K51 | 22670 | 2024-03-02 | 2020-09-16 | 3.5 | 3.93 | — | 3.3 | 0.012 | 1.25 | 0.0 | 0.10 | 22.76 | 0.01 | 1.352 | 25.15 | 2.06 | 16.6 | 81.6 | 1.8 | -4.69 | 0.83 | 0.80 | 0.93 | 3.3 | 0.004 | 0.65 | 0.0 | 0.04 | 23.44 | 0.00 | 1.685 | 17.88 | 4.51 | 11.5 | 88.4 | 0.1 | -2.58 | 1.60 | 0.83 | 0.81 | 0.67 | 153370 | 6631 | 62 | 4732 | 2 | 0 | 0 | logfile |
✔ | 7K52 | 22671 | 2024-03-02 | 2020-09-16 | 3.4 | 3.87 | — | 3.3 | 0.011 | 1.24 | 0.0 | 0.10 | 22.47 | 0.01 | 1.331 | 22.57 | 2.03 | 16.0 | 82.6 | 1.4 | -4.35 | 0.84 | 0.82 | 1.25 | 3.2 | 0.005 | 0.72 | 0.0 | 0.04 | 23.26 | 0.01 | 1.940 | 20.10 | 4.97 | 12.6 | 87.3 | 0.1 | -2.60 | 1.19 | 0.85 | 0.84 | 0.95 | 153370 | 6631 | 62 | 4732 | 2 | 0 | 0 | logfile |
✔ | 5U9F | 8521 | 2024-03-01 | 2016-12-16 | 3.2 | 4.48 | — | 3.3 | 0.006 | 0.95 | 0.0 | 0.08 | 22.02 | 0.01 | 2.301 | 12.61 | 1.02 | 10.8 | 88.2 | 1.0 | -5.04 | 0.87 | 0.78 | 1.55 | 3.4 | 0.006 | 0.75 | 1.0 | 0.04 | 23.26 | 0.01 | 1.802 | 25.76 | 4.19 | 11.0 | 88.9 | 0.1 | -2.22 | 1.46 | 0.94 | 0.90 | 1.09 | 152819 | 6576 | 72 | 4729 | 361 | 0 | 0 | logfile |
✔ | 8SYL | 40882 | 2024-03-21 | 2023-05-25 | 2.9 | 3.32 | 2.95 | 3.1 | 0.007 | 0.60 | 0.0 | 0.04 | 23.09 | 0.02 | 1.429 | 8.36 | 0.07 | 4.0 | 95.9 | 0.1 | -0.56 | 0.88 | 0.91 | 3.75 | 3.1 | 0.003 | 0.65 | 0.0 | 0.03 | 23.14 | 0.01 | 1.896 | 10.62 | 3.23 | 3.8 | 96.1 | 0.1 | -0.07 | 0.30 | 0.85 | 0.91 | 3.28 | 144591 | 5550 | 76 | 4729 | 480 | 74 | 0 | logfile |
✔ | 5U9G | 8522 | 2024-03-01 | 2016-12-16 | 3.2 | 4.54 | — | 3.3 | 0.006 | 0.92 | 0.0 | 0.08 | 21.99 | 0.01 | 2.111 | 12.37 | 0.93 | 10.6 | 88.5 | 1.0 | -5.08 | 0.89 | 0.79 | 1.20 | 3.4 | 0.005 | 0.69 | 0.0 | 0.03 | 23.04 | 0.00 | 1.809 | 21.51 | 3.09 | 9.4 | 90.4 | 0.2 | -1.67 | 1.89 | 0.95 | 0.91 | 1.11 | 152649 | 6561 | 70 | 4729 | 349 | 0 | 0 | logfile |
✔ | 7PJW | 13462 | 2024-03-28 | 2021-08-24 | 4.0 | 4.18 | 3.62 | 4.0 | 0.007 | 0.94 | 3.0 | 0.05 | 24.06 | 0.02 | 1.344 | 23.05 | 0.46 | 13.5 | 86.3 | 0.2 | -4.51 | 0.71 | 0.76 | — | 4.0 | 0.005 | 0.76 | 1.0 | 0.04 | 23.76 | 0.01 | 1.917 | 20.32 | 4.78 | 9.9 | 90.1 | 0.0 | -2.04 | 1.78 | 0.73 | 0.79 | — | 152719 | 6657 | 61 | 4728 | 2 | 0 | 0 | logfile |
✔ | 7QV2 | 14158 | 2024-03-20 | 2022-01-19 | 3.5 | 3.59 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.03 | 23.76 | 0.00 | 1.833 | 5.98 | 0.25 | 4.7 | 95.2 | 0.1 | -1.90 | 0.77 | 0.82 | 1.24 | 3.2 | 0.003 | 0.65 | 0.0 | 0.03 | 23.83 | 0.00 | 1.984 | 14.65 | 4.85 | 7.1 | 92.9 | 0.1 | -1.06 | 3.65 | 0.78 | 0.86 | 1.11 | 142856 | 5268 | 53 | 4726 | 24 | 0 | 0 | logfile |
✔ | 7SA4 | 24944 | 2024-03-26 | 2021-09-22 | 2.55 | 2.59 | — | 2.5 | 0.011 | 0.85 | 1.0 | 0.07 | 23.37 | 0.02 | 1.125 | 11.36 | 0.06 | 3.6 | 96.3 | 0.0 | -0.37 | 0.76 | 0.90 | 4.18 | 2.5 | 0.006 | 0.68 | 0.0 | 0.04 | 23.43 | 0.01 | 1.022 | 10.34 | 3.35 | 3.5 | 96.5 | 0.0 | 0.33 | 1.51 | 0.75 | 0.90 | 3.62 | 150065 | 6175 | 71 | 4724 | 441 | 2 | 0 | logfile |
✔ | 8A3L | 15116 | 2024-03-24 | 2022-06-08 | 3.42 | 3.28 | 3.30 | 3.3 | 0.008 | 0.76 | 2.0 | 0.05 | 23.48 | 0.02 | 1.607 | 10.99 | 2.12 | 7.5 | 91.9 | 0.6 | -0.87 | 0.78 | 0.80 | 2.45 | 3.3 | 0.003 | 0.64 | 0.0 | 0.03 | 23.30 | 0.01 | 1.801 | 10.73 | 3.10 | 4.9 | 95.0 | 0.1 | -0.63 | 1.06 | 0.84 | 0.85 | 2.17 | 147640 | 5876 | 65 | 4722 | 316 | 0 | 0 | logfile |
✔ | 6C4i | 7341 | 2024-03-27 | 2018-01-12 | 3.24 | 3.32 | 3.41 | 3.4 | 0.007 | 1.19 | 44.0 | 0.10 | 23.94 | 0.02 | 1.796 | 5.21 | 9.75 | 4.2 | 95.4 | 0.4 | -0.69 | 0.55 | 0.81 | 1.76 | 3.3 | 0.004 | 0.64 | 1.0 | 0.04 | 23.36 | 0.01 | 1.885 | 11.33 | 5.02 | 4.0 | 96.0 | 0.1 | -0.07 | 0.60 | 0.61 | 0.84 | 1.94 | 151446 | 6381 | 72 | 4717 | 319 | 2 | 0 | logfile |
✔ | 3J9Z | 6315 | 2024-03-03 | 2015-03-27 | 3.6 | 3.80 | — | 3.7 | 0.017 | 2.31 | 171.0 | 0.16 | 24.24 | 0.04 | 2.267 | 1.72 | 3.84 | 7.6 | 89.1 | 3.3 | -2.82 | 0.56 | 0.39 | 0.14 | 3.7 | 0.004 | 0.74 | 1.0 | 0.04 | 23.55 | 0.01 | 1.991 | 17.75 | 3.71 | 9.1 | 90.4 | 0.5 | -2.04 | 2.18 | 0.84 | 0.83 | 0.85 | 156714 | 7125 | 59 | 4717 | 1 | 0 | 0 | logfile |
✔ | 7QGH | 13955 | 2024-03-24 | 2021-12-08 | 4.48 | 9.26 | — | 4.8 | 0.016 | 1.62 | 58.0 | 0.11 | 22.93 | 0.01 | 0.197 | 5.44 | 1.41 | 8.8 | 90.2 | 1.0 | -4.05 | 0.66 | 0.38 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.04 | 24.19 | 0.01 | 1.599 | 34.20 | 0.02 | 8.8 | 91.1 | 0.1 | -2.08 | 2.07 | 0.85 | 0.77 | — | 147973 | 6046 | 58 | 4716 | 3 | 9 | 0 | logfile |
✔ | 8R55 | 18901 | 2024-03-22 | 2023-11-16 | 3.57 | 3.93 | 3.88 | 3.8 | 0.006 | 1.01 | 9.0 | 0.05 | 24.53 | 0.01 | 1.933 | 10.81 | 1.40 | 6.9 | 92.9 | 0.2 | -2.49 | 0.70 | 0.81 | 0.58 | 3.7 | 0.004 | 0.70 | 0.0 | 0.04 | 24.15 | 0.00 | 2.025 | 18.42 | 7.99 | 8.3 | 91.6 | 0.1 | -2.00 | 0.52 | 0.72 | 0.83 | 0.57 | 143867 | 5438 | 53 | 4715 | 0 | 0 | 0 | logfile |
✔ | 3JCD | 6549 | 2024-03-24 | 2015-12-01 | 3.7 | 5.07 | — | 19.0 | 0.006 | 0.83 | 0.0 | 0.04 | 22.77 | 0.00 | 1.289 | 14.63 | 0.02 | 9.6 | 85.8 | 4.5 | -2.43 | 0.34 | 0.04 | 0.30 | 3.4 | 0.004 | 1.00 | 0.0 | 0.05 | 25.37 | 0.01 | 1.534 | 38.21 | 2.07 | 13.9 | 84.8 | 1.3 | -3.81 | 2.45 | 0.69 | 0.40 | -0.06 | 147815 | 5982 | 57 | 4715 | 0 | 0 | 0 | logfile |
✔ | 5U4i | 8505 | 2024-03-25 | 2016-12-04 | 3.5 | 3.09 | 3.83 | 3.7 | 0.007 | 1.17 | 41.0 | 0.10 | 24.79 | 0.02 | 1.386 | 8.56 | 8.19 | 6.4 | 92.7 | 0.8 | -1.32 | 0.60 | 0.74 | 0.22 | 3.0 | 0.006 | 0.86 | 0.0 | 0.04 | 24.97 | 0.01 | 1.712 | 34.63 | 7.38 | 7.9 | 92.0 | 0.1 | -1.92 | 1.50 | 0.63 | 0.74 | 0.38 | 149495 | 6159 | 61 | 4715 | 125 | 0 | 0 | logfile |
✔ | 3JBV | 6486 | 2024-03-22 | 2015-10-16 | 3.32 | 3.40 | — | 3.3 | 0.007 | 1.32 | 4.0 | 0.10 | 25.42 | 0.01 | 0.389 | 31.39 | 3.04 | 8.1 | 88.9 | 3.0 | -2.71 | 0.67 | 0.78 | 1.48 | 3.3 | 0.004 | 0.71 | 0.0 | 0.04 | 24.19 | 0.01 | 1.980 | 12.86 | 5.99 | 8.9 | 90.5 | 0.6 | -1.87 | 1.56 | 0.69 | 0.80 | 1.40 | 145911 | 5734 | 57 | 4712 | 1 | 0 | 0 | logfile |