Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XSM	33427	2023-02-20	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	15.76	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.76	0.0	0.04	19.93	0.01	1.773	49.65	0.00	0.0	0.0	0.0	—	1.70	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7XSL	33426	2023-02-20	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	16.20	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.006	0.70	0.0	0.04	18.31	0.01	1.810	33.53	0.00	0.0	0.0	0.0	—	1.02	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7XSN	33428	2023-02-18	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	16.67	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.61	0.0	0.03	16.36	0.00	2.111	20.82	0.00	0.0	0.0	0.0	—	0.30	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	7UVT	26816	2023-02-20	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	7NAF	24271	2023-02-22	2021-06-21	3.13	3.14	3.06	3.1	0.005	0.62	0.0	0.03	15.40	0.01	2.172	7.07	0.00	4.2	95.8	0.0	0.43	0.70	0.78	3.17	3.1	0.005	0.66	0.0	0.04	16.46	0.00	2.125	7.42	0.43	5.9	94.1	0.0	-0.06	0.31	0.71	0.82	3.06	18868	1342	17	378	0	2	0	logfile
✔	7R6L	24281	2023-02-18	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	16.80	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.73	0.0	0.04	16.40	0.01	1.882	7.54	0.00	0.0	0.0	0.0	—	0.09	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7R6M	24282	2023-02-18	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	17.86	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.85	0.0	0.04	18.31	0.01	1.758	16.73	0.00	0.0	0.0	0.0	—	0.19	0.53	0.72	—	7755	0	3	362	13	0	0	logfile
✔	7VVU	32148	2023-02-28	2021-11-09	3.4	4.41	—	3.4	0.006	0.75	0.0	0.05	24.83	0.00	2.216	8.78	0.31	1.5	98.5	0.0	1.82	0.88	0.80	1.79	3.4	0.004	0.61	0.0	0.03	25.68	0.00	2.152	11.55	0.08	2.4	97.6	0.0	2.33	1.29	0.90	0.84	1.55	19374	1466	16	359	1	0	0	logfile
✔	7PFX	13383	2023-02-21	2021-08-12	4.3	7.46	—	4.0	0.006	0.88	0.0	0.05	30.33	0.01	2.234	6.11	0.00	1.3	98.7	0.0	0.30	0.91	0.85	—	4.0	0.004	0.66	0.0	0.04	30.58	0.00	2.131	19.18	0.00	2.8	97.2	0.0	1.72	1.57	0.91	0.86	—	13880	843	11	354	0	0	0	logfile
✔	7PFV	13381	2023-02-21	2021-08-12	4.4	7.43	—	4.1	0.006	0.86	0.0	0.05	30.47	0.01	2.249	7.20	0.00	1.2	98.8	0.0	0.36	0.91	0.85	—	4.1	0.004	0.62	0.0	0.03	29.87	0.00	2.189	16.44	0.00	1.9	98.1	0.0	2.32	0.62	0.91	0.86	—	13880	843	11	354	0	0	0	logfile
✔	7PFE	13373	2023-02-21	2021-08-11	4.4	5.35	—	3.9	0.007	0.94	0.0	0.05	29.84	0.01	2.264	6.87	0.00	1.5	98.5	0.0	-0.43	0.91	0.85	—	3.9	0.004	0.67	0.0	0.04	29.59	0.00	2.112	17.93	0.00	2.9	97.1	0.0	0.87	1.61	0.91	0.85	—	13880	843	11	354	0	0	0	logfile
✔	7PEW	13359	2023-02-21	2021-08-11	4.6	5.68	—	4.1	0.006	0.91	0.0	0.05	30.24	0.01	2.249	5.53	0.00	1.1	98.9	0.0	-0.20	0.89	0.85	—	4.0	0.004	0.66	0.0	0.04	29.62	0.00	2.156	17.10	0.00	1.9	98.1	0.0	1.13	1.61	0.89	0.85	—	13304	768	10	352	0	0	0	logfile
✔	7DBP	30161	2023-02-21	2020-10-21	4.5	5.32	—	4.3	0.003	0.45	0.0	0.03	27.36	0.00	2.226	8.54	0.57	4.4	94.9	0.7	-0.94	0.87	0.76	—	4.3	0.005	0.66	0.0	0.03	30.47	0.00	2.147	27.18	0.00	3.7	96.3	0.0	0.77	2.53	0.90	0.74	—	13801	837	11	350	0	0	0	logfile
✔	5A8L	3099	2023-02-20	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.91	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.005	0.82	0.0	0.04	17.26	0.01	2.034	19.30	1.33	10.7	88.1	1.1	-2.35	1.54	0.23	0.63	0.72	12264	624	9	347	0	0	0	logfile
✔	7PFD	13372	2023-02-21	2021-08-11	4.4	7.91	—	3.8	0.006	0.92	0.0	0.05	29.97	0.01	2.245	6.72	0.00	2.1	97.9	0.0	-0.57	0.89	0.77	—	3.8	0.005	0.71	0.0	0.04	31.05	0.00	2.151	24.83	0.00	2.9	97.1	0.0	0.27	1.77	0.89	0.70	—	13675	843	11	344	0	0	0	logfile
✔	7XZX	33533	2023-02-23	2022-06-03	4.53	5.42	4.49	4.5	0.006	0.99	0.0	0.06	25.64	0.00	1.688	10.77	0.15	1.7	98.3	0.0	0.69	0.69	0.37	—	4.4	0.004	0.65	0.0	0.04	25.63	0.00	2.095	14.00	0.00	2.6	97.4	0.0	1.09	1.71	0.90	0.82	—	19270	1554	14	342	0	0	0	logfile
✔	7PEY	13361	2023-02-21	2021-08-11	4.5	5.20	—	3.8	0.006	0.90	0.0	0.05	29.92	0.01	2.177	7.49	0.00	1.6	98.4	0.0	-0.09	0.89	0.84	—	3.8	0.005	0.68	0.0	0.04	29.92	0.00	2.127	22.29	0.00	3.1	96.9	0.0	1.41	1.31	0.89	0.85	—	13099	768	10	342	0	0	0	logfile
✔	6AHR	9626	2023-02-26	2018-08-20	3.92	4.05	—	3.9	0.004	0.96	0.0	0.05	12.84	0.01	1.742	9.87	0.13	10.2	89.6	0.3	-4.23	0.71	0.61	0.54	3.9	0.005	0.87	0.0	0.04	16.28	0.01	2.063	22.59	0.79	12.1	87.8	0.1	-2.17	2.79	0.78	0.76	0.28	27851	2595	13	341	1	0	0	logfile
✔	5MPS	3539	2023-02-22	2016-12-18	3.85	4.03	—	3.9	0.008	1.41	13.0	0.11	15.52	0.01	1.479	7.71	2.50	8.5	90.6	0.9	-2.11	0.73	0.82	1.54	3.9	0.003	0.74	0.0	0.04	16.68	0.00	1.889	16.87	0.35	5.4	94.5	0.0	0.17	0.79	0.73	0.80	1.17	58929	6718	36	339	99	0	0	logfile
✔	5U4J	8506	2023-02-20	2016-12-04	3.7	3.88	3.59	3.9	0.009	1.21	2.0	0.10	17.20	0.02	1.797	2.97	2.82	5.7	93.9	0.4	-2.95	0.42	0.80	2.24	3.8	0.006	0.81	0.0	0.04	16.64	0.01	2.110	17.08	1.41	5.3	94.5	0.2	-1.41	0.66	0.44	0.79	1.64	11360	524	10	339	0	0	0	logfile

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