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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7oDT | 12847 | 2023-04-21 | 2021-04-30 | 3.1 | 3.31 | — | 3.1 | 0.003 | 0.41 | 0.0 | 0.03 | 11.01 | 0.01 | 1.988 | 5.28 | 0.53 | 1.2 | 98.8 | 0.0 | 1.05 | 0.77 | 0.79 | 2.84 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 14.67 | 0.00 | 1.891 | 10.64 | 0.27 | 2.6 | 97.4 | 0.0 | 0.69 | 0.71 | 0.78 | 0.83 | 2.53 | 110473 | 9585 | 71 | 1526 | 110 | 0 | 0 | logfile |
✘ | 7PD3 | 13329 | 2023-04-20 | 2021-08-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108076 | 9276 | 76 | 1522 | 125 | 0 | 0 | logfile |
✔ | 8ETH | 24409 | 2023-04-28 | 2022-10-17 | 3.8 | 2.97 | — | 2.9 | 0.006 | 0.62 | 0.0 | 0.04 | 16.49 | 0.01 | 2.088 | 10.10 | 0.53 | 5.2 | 94.6 | 0.2 | -0.47 | 0.63 | 0.61 | 2.70 | 2.9 | 0.003 | 0.56 | 0.0 | 0.04 | 16.53 | 0.00 | 2.077 | 10.66 | 0.48 | 4.3 | 95.5 | 0.2 | 0.39 | 1.11 | 0.63 | 0.60 | 2.35 | 77577 | 6161 | 42 | 1508 | 1 | 0 | 0 | logfile |
✔ | 7V2L | 31655 | 2023-04-19 | 2021-08-09 | 3.3 | 3.14 | 3.24 | 3.1 | 0.008 | 1.07 | 1.0 | 0.10 | 16.30 | 0.00 | 2.214 | 5.68 | 0.09 | 6.7 | 93.1 | 0.2 | -0.61 | 0.78 | 0.87 | 2.42 | 3.1 | 0.003 | 0.56 | 0.0 | 0.03 | 16.73 | 0.00 | 2.080 | 8.24 | 0.32 | 7.0 | 92.9 | 0.1 | -0.28 | 0.24 | 0.79 | 0.88 | 2.06 | 53410 | 2621 | 24 | 1507 | 2 | 0 | 0 | logfile |
✔ | 5XYi | 6788 | 2023-04-23 | 2017-07-08 | 3.35 | 3.41 | — | 3.4 | 0.007 | 1.11 | 5.0 | 0.09 | 18.00 | 0.00 | 1.113 | 14.15 | 5.14 | 8.3 | 89.0 | 2.7 | -3.65 | 0.63 | 0.70 | 1.75 | 3.4 | 0.008 | 0.79 | 0.0 | 0.04 | 17.38 | 0.01 | 2.069 | 11.73 | 0.98 | 8.5 | 90.6 | 0.9 | -1.50 | 1.55 | 0.79 | 0.84 | 1.40 | 65924 | 4368 | 34 | 1490 | 0 | 0 | 0 | logfile |
✔ | 7oDR | 12845 | 2023-04-19 | 2021-04-30 | 2.9 | 3.11 | — | 3.0 | 0.002 | 0.41 | 0.0 | 0.03 | 11.20 | 0.02 | 1.963 | 4.98 | 0.44 | 1.1 | 98.9 | 0.0 | 0.96 | 0.74 | 0.80 | 3.31 | 3.0 | 0.003 | 0.70 | 0.0 | 0.04 | 15.27 | 0.01 | 1.900 | 10.20 | 2.30 | 2.0 | 98.0 | 0.0 | 0.89 | 1.26 | 0.76 | 0.84 | 2.70 | 107464 | 9244 | 68 | 1489 | 135 | 0 | 0 | logfile |
✔ | 7V2o | 31658 | 2023-04-19 | 2021-08-09 | 3.5 | 3.22 | 3.31 | 3.0 | 0.008 | 1.12 | 2.0 | 0.10 | 16.74 | 0.00 | 2.203 | 6.79 | 0.18 | 5.3 | 94.5 | 0.2 | -0.53 | 0.81 | 0.84 | 2.00 | 3.0 | 0.006 | 0.68 | 0.0 | 0.04 | 17.20 | 0.01 | 2.071 | 11.50 | 0.41 | 6.4 | 93.5 | 0.1 | -0.38 | 0.37 | 0.80 | 0.83 | 1.99 | 53005 | 2624 | 24 | 1487 | 2 | 0 | 0 | logfile |
✔ | 7oDS | 12846 | 2023-04-20 | 2021-04-30 | 3.1 | 3.32 | — | 3.1 | 0.002 | 0.40 | 0.0 | 0.03 | 11.26 | 0.02 | 2.009 | 5.03 | 0.51 | 1.2 | 98.8 | 0.0 | 0.91 | 0.78 | 0.76 | 2.42 | 3.1 | 0.007 | 0.85 | 0.0 | 0.05 | 15.09 | 0.01 | 1.757 | 13.49 | 0.41 | 4.0 | 96.0 | 0.0 | -0.12 | 1.70 | 0.80 | 0.80 | 2.27 | 108339 | 9371 | 67 | 1487 | 132 | 0 | 0 | logfile |
✔ | 7V2M | 31656 | 2023-04-20 | 2021-08-09 | 3.4 | 3.28 | 3.35 | 3.1 | 0.008 | 1.15 | 3.0 | 0.11 | 16.39 | 0.00 | 2.232 | 6.24 | 0.33 | 6.5 | 93.2 | 0.3 | -0.70 | 0.80 | 0.86 | 2.18 | 3.1 | 0.005 | 0.65 | 0.0 | 0.04 | 16.95 | 0.00 | 2.055 | 11.12 | 0.49 | 6.9 | 93.0 | 0.0 | -0.33 | 0.32 | 0.80 | 0.87 | 2.02 | 55229 | 2909 | 25 | 1486 | 2 | 0 | 0 | logfile |
✔ | 6TMF | 10519 | 2023-04-23 | 2019-12-04 | 2.8 | 2.90 | — | 2.8 | 0.017 | 1.11 | 2.0 | 0.07 | 15.95 | 0.01 | 1.750 | 4.72 | 0.73 | 9.5 | 90.0 | 0.5 | -3.66 | 0.85 | 0.85 | 3.51 | 2.8 | 0.005 | 0.68 | 0.0 | 0.04 | 16.94 | 0.01 | 1.856 | 9.84 | 3.28 | 7.5 | 92.4 | 0.1 | -0.65 | 2.23 | 0.88 | 0.89 | 2.84 | 65449 | 4172 | 35 | 1485 | 37 | 0 | 0 | logfile |
✔ | 6ZQA | 11357 | 2023-04-26 | 2020-07-09 | 4.4 | 4.48 | — | 4.4 | 0.006 | 1.11 | 1.0 | 0.06 | 14.62 | 0.01 | 1.928 | 5.28 | 0.00 | 9.3 | 90.4 | 0.3 | -3.27 | 0.77 | 0.74 | — | 4.4 | 0.011 | 1.41 | 0.0 | 0.06 | 16.91 | 0.01 | 1.638 | 24.83 | 0.00 | 20.3 | 79.5 | 0.2 | -3.96 | 1.34 | 0.76 | 0.75 | — | 125991 | 19047 | 63 | 1485 | 5 | 0 | 0 | logfile |
✔ | 5MMJ | 3532 | 2023-04-20 | 2016-12-10 | 3.6 | 3.88 | — | 3.6 | 0.008 | 1.15 | 0.0 | 0.05 | 16.66 | 0.01 | 1.774 | 10.61 | 7.28 | 4.9 | 94.8 | 0.3 | -3.46 | 0.92 | 0.86 | 1.28 | 3.6 | 0.005 | 0.71 | 0.0 | 0.04 | 16.28 | 0.01 | 1.334 | 19.32 | 1.26 | 5.4 | 94.4 | 0.1 | -0.53 | 1.60 | 0.91 | 0.85 | 1.05 | 55315 | 2806 | 31 | 1484 | 359 | 0 | 0 | logfile |
✔ | 7WTS | 32799 | 2023-04-22 | 2022-02-05 | 3.2 | 3.07 | — | 3.0 | 0.005 | 0.85 | 0.0 | 0.05 | 16.37 | 0.01 | 2.076 | 5.07 | 0.09 | 3.8 | 96.2 | 0.0 | -1.00 | 0.75 | 0.75 | 2.70 | 3.0 | 0.008 | 0.76 | 0.0 | 0.05 | 16.98 | 0.01 | 2.047 | 9.70 | 0.34 | 4.4 | 95.6 | 0.0 | 0.10 | 0.37 | 0.79 | 0.80 | 2.51 | 61945 | 3777 | 23 | 1481 | 0 | 0 | 0 | logfile |
✔ | 5X8R | 6710 | 2023-04-20 | 2017-03-03 | 3.7 | 3.88 | — | 3.8 | 0.012 | 1.32 | 8.0 | 0.06 | 14.80 | 0.01 | 1.255 | 12.20 | 1.03 | 12.1 | 86.8 | 1.1 | -4.16 | 0.77 | 0.74 | 1.22 | 3.7 | 0.004 | 0.76 | 0.0 | 0.04 | 16.05 | 0.01 | 2.013 | 19.82 | 1.14 | 12.4 | 87.2 | 0.4 | -2.36 | 1.33 | 0.81 | 0.83 | 0.98 | 55412 | 2969 | 26 | 1480 | 0 | 0 | 0 | logfile |
✘ | 4CE4 | 2490 | 2023-04-23 | 2013-11-08 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✔ | 8C00 | 16347 | 2023-04-22 | 2022-12-15 | 2.9 | 3.49 | — | 2.8 | 0.007 | 0.82 | 0.0 | 0.06 | 14.52 | 0.01 | 2.091 | 3.29 | 0.84 | 3.4 | 96.3 | 0.3 | -0.72 | 0.88 | 0.89 | 3.72 | 2.8 | 0.003 | 0.63 | 0.0 | 0.04 | 14.64 | 0.00 | 2.140 | 6.42 | 1.31 | 3.1 | 96.8 | 0.1 | 0.49 | 1.10 | 0.88 | 0.89 | 2.77 | 63117 | 4186 | 26 | 1425 | 0 | 0 | 0 | logfile |
✔ | 6ZQG | 11363 | 2023-04-29 | 2020-07-09 | 3.5 | 3.60 | — | 3.5 | 0.019 | 1.40 | 0.0 | 0.07 | 17.42 | 0.01 | 1.552 | 7.45 | 0.19 | 8.3 | 91.5 | 0.2 | -2.91 | 0.80 | 0.79 | 3.28 | 3.5 | 0.005 | 0.68 | 0.0 | 0.04 | 16.89 | 0.00 | 1.891 | 8.81 | 0.51 | 6.6 | 93.3 | 0.0 | -0.28 | 0.47 | 0.81 | 0.81 | 2.14 | 80072 | 7391 | 41 | 1418 | 42 | 0 | 0 | logfile |
✔ | 7V2Q | 31660 | 2023-04-19 | 2021-08-09 | 3.24 | 3.12 | 3.13 | 3.0 | 0.008 | 1.14 | 2.0 | 0.10 | 15.54 | 0.00 | 2.189 | 6.75 | 0.16 | 6.4 | 93.6 | 0.1 | -1.01 | 0.82 | 0.86 | 1.80 | 2.9 | 0.006 | 0.70 | 0.0 | 0.04 | 16.49 | 0.01 | 2.111 | 10.94 | 0.62 | 6.6 | 93.3 | 0.0 | -0.43 | 1.48 | 0.82 | 0.88 | 2.05 | 52904 | 2875 | 25 | 1391 | 2 | 0 | 0 | logfile |
✔ | 7PWF | 13680 | 2023-04-21 | 2021-10-06 | 2.85 | 2.33 | — | 2.5 | 0.007 | 0.98 | 0.0 | 0.07 | 17.37 | 0.03 | 1.748 | 7.23 | 0.09 | 5.3 | 94.5 | 0.2 | -2.09 | 0.68 | 0.81 | 3.26 | 2.5 | 0.003 | 0.81 | 0.0 | 0.04 | 17.75 | 0.01 | 1.947 | 6.48 | 2.80 | 4.9 | 95.0 | 0.1 | -1.17 | 0.92 | 0.68 | 0.81 | 2.89 | 60466 | 3965 | 45 | 1355 | 303 | 0 | 0 | logfile |
✔ | 5LL6 | 4071 | 2023-04-20 | 2016-07-26 | 3.9 | 4.01 | — | 3.9 | 0.012 | 1.50 | 6.0 | 0.11 | 19.04 | 0.01 | 0.924 | 4.96 | 2.53 | 10.6 | 85.7 | 3.7 | -3.86 | 0.69 | 0.82 | 1.20 | 3.9 | 0.009 | 1.04 | 0.0 | 0.05 | 19.21 | 0.01 | 1.715 | 25.88 | 1.94 | 13.6 | 85.6 | 0.9 | -3.02 | 0.89 | 0.70 | 0.81 | 0.98 | 55262 | 3429 | 20 | 1325 | 5 | 0 | 0 | logfile |