Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oDT	12847	2023-04-21	2021-04-30	3.1	3.31	—	3.1	0.003	0.41	0.0	0.03	11.01	0.01	1.988	5.28	0.53	1.2	98.8	0.0	1.05	0.77	0.79	2.84	3.1	0.003	0.58	0.0	0.04	14.67	0.00	1.891	10.64	0.27	2.6	97.4	0.0	0.69	0.71	0.78	0.83	2.53	110473	9585	71	1526	110	0	0	logfile
✘	7PD3	13329	2023-04-20	2021-08-04	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108076	9276	76	1522	125	0	0	logfile
✔	8ETH	24409	2023-04-28	2022-10-17	3.8	2.97	—	2.9	0.006	0.62	0.0	0.04	16.49	0.01	2.088	10.10	0.53	5.2	94.6	0.2	-0.47	0.63	0.61	2.70	2.9	0.003	0.56	0.0	0.04	16.53	0.00	2.077	10.66	0.48	4.3	95.5	0.2	0.39	1.11	0.63	0.60	2.35	77577	6161	42	1508	1	0	0	logfile
✔	7V2L	31655	2023-04-19	2021-08-09	3.3	3.14	3.24	3.1	0.008	1.07	1.0	0.10	16.30	0.00	2.214	5.68	0.09	6.7	93.1	0.2	-0.61	0.78	0.87	2.42	3.1	0.003	0.56	0.0	0.03	16.73	0.00	2.080	8.24	0.32	7.0	92.9	0.1	-0.28	0.24	0.79	0.88	2.06	53410	2621	24	1507	2	0	0	logfile
✔	5XYi	6788	2023-04-23	2017-07-08	3.35	3.41	—	3.4	0.007	1.11	5.0	0.09	18.00	0.00	1.113	14.15	5.14	8.3	89.0	2.7	-3.65	0.63	0.70	1.75	3.4	0.008	0.79	0.0	0.04	17.38	0.01	2.069	11.73	0.98	8.5	90.6	0.9	-1.50	1.55	0.79	0.84	1.40	65924	4368	34	1490	0	0	0	logfile
✔	7oDR	12845	2023-04-19	2021-04-30	2.9	3.11	—	3.0	0.002	0.41	0.0	0.03	11.20	0.02	1.963	4.98	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.003	0.70	0.0	0.04	15.27	0.01	1.900	10.20	2.30	2.0	98.0	0.0	0.89	1.26	0.76	0.84	2.70	107464	9244	68	1489	135	0	0	logfile
✔	7V2o	31658	2023-04-19	2021-08-09	3.5	3.22	3.31	3.0	0.008	1.12	2.0	0.10	16.74	0.00	2.203	6.79	0.18	5.3	94.5	0.2	-0.53	0.81	0.84	2.00	3.0	0.006	0.68	0.0	0.04	17.20	0.01	2.071	11.50	0.41	6.4	93.5	0.1	-0.38	0.37	0.80	0.83	1.99	53005	2624	24	1487	2	0	0	logfile
✔	7oDS	12846	2023-04-20	2021-04-30	3.1	3.32	—	3.1	0.002	0.40	0.0	0.03	11.26	0.02	2.009	5.03	0.51	1.2	98.8	0.0	0.91	0.78	0.76	2.42	3.1	0.007	0.85	0.0	0.05	15.09	0.01	1.757	13.49	0.41	4.0	96.0	0.0	-0.12	1.70	0.80	0.80	2.27	108339	9371	67	1487	132	0	0	logfile
✔	7V2M	31656	2023-04-20	2021-08-09	3.4	3.28	3.35	3.1	0.008	1.15	3.0	0.11	16.39	0.00	2.232	6.24	0.33	6.5	93.2	0.3	-0.70	0.80	0.86	2.18	3.1	0.005	0.65	0.0	0.04	16.95	0.00	2.055	11.12	0.49	6.9	93.0	0.0	-0.33	0.32	0.80	0.87	2.02	55229	2909	25	1486	2	0	0	logfile
✔	6TMF	10519	2023-04-23	2019-12-04	2.8	2.90	—	2.8	0.017	1.11	2.0	0.07	15.95	0.01	1.750	4.72	0.73	9.5	90.0	0.5	-3.66	0.85	0.85	3.51	2.8	0.005	0.68	0.0	0.04	16.94	0.01	1.856	9.84	3.28	7.5	92.4	0.1	-0.65	2.23	0.88	0.89	2.84	65449	4172	35	1485	37	0	0	logfile
✔	6ZQA	11357	2023-04-26	2020-07-09	4.4	4.48	—	4.4	0.006	1.11	1.0	0.06	14.62	0.01	1.928	5.28	0.00	9.3	90.4	0.3	-3.27	0.77	0.74	—	4.4	0.011	1.41	0.0	0.06	16.91	0.01	1.638	24.83	0.00	20.3	79.5	0.2	-3.96	1.34	0.76	0.75	—	125991	19047	63	1485	5	0	0	logfile
✔	5MMJ	3532	2023-04-20	2016-12-10	3.6	3.88	—	3.6	0.008	1.15	0.0	0.05	16.66	0.01	1.774	10.61	7.28	4.9	94.8	0.3	-3.46	0.92	0.86	1.28	3.6	0.005	0.71	0.0	0.04	16.28	0.01	1.334	19.32	1.26	5.4	94.4	0.1	-0.53	1.60	0.91	0.85	1.05	55315	2806	31	1484	359	0	0	logfile
✔	7WTS	32799	2023-04-22	2022-02-05	3.2	3.07	—	3.0	0.005	0.85	0.0	0.05	16.37	0.01	2.076	5.07	0.09	3.8	96.2	0.0	-1.00	0.75	0.75	2.70	3.0	0.008	0.76	0.0	0.05	16.98	0.01	2.047	9.70	0.34	4.4	95.6	0.0	0.10	0.37	0.79	0.80	2.51	61945	3777	23	1481	0	0	0	logfile
✔	5X8R	6710	2023-04-20	2017-03-03	3.7	3.88	—	3.8	0.012	1.32	8.0	0.06	14.80	0.01	1.255	12.20	1.03	12.1	86.8	1.1	-4.16	0.77	0.74	1.22	3.7	0.004	0.76	0.0	0.04	16.05	0.01	2.013	19.82	1.14	12.4	87.2	0.4	-2.36	1.33	0.81	0.83	0.98	55412	2969	26	1480	0	0	0	logfile
✘	4CE4	2490	2023-04-23	2013-11-08	4.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	40	1437	984	0	0	logfile
✔	8C00	16347	2023-04-22	2022-12-15	2.9	3.49	—	2.8	0.007	0.82	0.0	0.06	14.52	0.01	2.091	3.29	0.84	3.4	96.3	0.3	-0.72	0.88	0.89	3.72	2.8	0.003	0.63	0.0	0.04	14.64	0.00	2.140	6.42	1.31	3.1	96.8	0.1	0.49	1.10	0.88	0.89	2.77	63117	4186	26	1425	0	0	0	logfile
✔	6ZQG	11363	2023-04-29	2020-07-09	3.5	3.60	—	3.5	0.019	1.40	0.0	0.07	17.42	0.01	1.552	7.45	0.19	8.3	91.5	0.2	-2.91	0.80	0.79	3.28	3.5	0.005	0.68	0.0	0.04	16.89	0.00	1.891	8.81	0.51	6.6	93.3	0.0	-0.28	0.47	0.81	0.81	2.14	80072	7391	41	1418	42	0	0	logfile
✔	7V2Q	31660	2023-04-19	2021-08-09	3.24	3.12	3.13	3.0	0.008	1.14	2.0	0.10	15.54	0.00	2.189	6.75	0.16	6.4	93.6	0.1	-1.01	0.82	0.86	1.80	2.9	0.006	0.70	0.0	0.04	16.49	0.01	2.111	10.94	0.62	6.6	93.3	0.0	-0.43	1.48	0.82	0.88	2.05	52904	2875	25	1391	2	0	0	logfile
✔	7PWF	13680	2023-04-21	2021-10-06	2.85	2.33	—	2.5	0.007	0.98	0.0	0.07	17.37	0.03	1.748	7.23	0.09	5.3	94.5	0.2	-2.09	0.68	0.81	3.26	2.5	0.003	0.81	0.0	0.04	17.75	0.01	1.947	6.48	2.80	4.9	95.0	0.1	-1.17	0.92	0.68	0.81	2.89	60466	3965	45	1355	303	0	0	logfile
✔	5LL6	4071	2023-04-20	2016-07-26	3.9	4.01	—	3.9	0.012	1.50	6.0	0.11	19.04	0.01	0.924	4.96	2.53	10.6	85.7	3.7	-3.86	0.69	0.82	1.20	3.9	0.009	1.04	0.0	0.05	19.21	0.01	1.715	25.88	1.94	13.6	85.6	0.9	-3.02	0.89	0.70	0.81	0.98	55262	3429	20	1325	5	0	0	logfile

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