Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CSZ	26976	2023-09-29	2022-05-13	3.2	3.55	3.13	3.3	0.005	0.67	0.0	0.04	19.39	0.00	1.962	11.72	0.00	4.9	95.1	0.0	-0.97	0.84	0.86	4.03	3.3	0.004	0.58	0.0	0.03	19.16	0.00	1.962	10.18	0.71	4.9	95.1	0.0	-0.25	2.17	0.84	0.88	3.60	8948	494	5	236	3	0	0	logfile
✘	8SA4	40264	2023-09-28	2023-03-31	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5193	0	3	236	1	0	0	logfile
✔	6T7D	10394	2023-09-28	2019-10-21	4.4	4.45	4.29	4.1	0.005	0.86	0.0	0.05	32.64	0.01	2.107	2.55	0.00	2.0	98.0	0.0	-2.34	0.86	0.77	—	4.1	0.006	0.70	0.0	0.03	32.45	0.00	2.121	16.05	0.00	6.2	93.8	0.0	2.70	0.72	0.87	0.83	—	8209	853	11	234	0	0	0	logfile
✔	8CTL	26994	2023-09-28	2022-05-16	3.1	3.52	3.12	3.3	0.009	1.32	4.0	0.09	24.25	0.01	2.280	32.18	7.20	12.1	87.4	0.5	-5.68	0.62	0.46	0.80	3.3	0.003	0.64	0.0	0.04	20.68	0.00	1.956	12.01	0.00	3.3	96.7	0.0	-0.54	2.41	0.81	0.80	2.90	8138	401	4	233	0	0	0	logfile
✔	6PoM	20416	2023-09-28	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.29	0.0	0.06	21.60	0.01	1.918	61.40	0.00	0.0	0.0	0.0	—	1.76	0.75	0.80	—	4937	0	2	230	0	0	0	logfile
✔	7UTN	26782	2023-09-28	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	18.57	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.002	0.52	0.0	0.03	18.32	0.00	2.194	7.85	0.58	1.5	98.5	0.0	1.03	0.32	0.82	0.84	3.64	8003	397	4	228	0	0	0	logfile
✔	7N3o	24142	2023-09-28	2021-06-01	3.8	4.01	—	3.9	0.003	0.59	0.0	0.04	17.14	0.00	2.285	8.30	1.35	3.6	96.4	0.0	1.09	0.71	0.66	1.57	3.9	0.005	0.75	0.0	0.04	18.48	0.01	2.129	21.44	0.81	4.9	95.1	0.0	0.37	0.87	0.75	0.75	1.92	8295	454	2	222	0	0	0	logfile
✔	6ZHY	11221	2023-09-29	2020-06-24	3.0	3.57	2.97	3.1	0.005	0.91	0.0	0.06	27.29	0.01	2.316	3.82	0.21	1.5	98.5	0.0	0.65	0.90	0.87	4.24	3.1	0.004	0.62	0.0	0.03	29.00	0.00	2.105	8.70	3.20	1.6	98.4	0.0	3.33	0.59	0.91	0.90	3.34	8999	562	9	220	0	0	0	logfile
✔	7XHT	33198	2023-09-28	2022-04-10	2.55	2.77	2.54	2.8	0.003	0.68	0.0	0.03	14.64	0.00	2.014	6.29	0.00	1.8	98.2	0.0	0.35	0.69	0.85	5.47	2.8	0.003	0.53	0.0	0.03	15.92	0.00	2.006	6.29	1.17	2.8	97.2	0.0	0.67	0.35	0.65	0.85	4.96	7839	395	6	220	3	0	0	logfile
✔	8EU2	28602	2023-09-29	2022-10-18	2.93	2.77	3.14	2.1	0.005	0.82	0.0	0.05	28.19	0.01	2.381	2.44	0.00	2.5	97.5	0.0	-0.81	0.82	0.81	2.88	2.1	0.004	0.65	0.0	0.03	28.79	0.01	2.284	10.98	1.37	1.4	98.6	0.0	2.68	0.43	0.84	0.84	1.68	8682	524	8	220	0	0	0	logfile
✔	8ETV	28600	2023-09-29	2022-10-17	3.16	3.01	3.36	2.0	0.006	0.87	0.0	0.05	28.33	0.01	2.305	2.83	0.00	2.3	97.7	0.0	-0.99	0.80	0.77	1.76	2.0	0.005	0.68	0.0	0.04	29.10	0.00	2.092	14.26	0.69	2.7	97.3	0.0	1.79	0.46	0.81	0.80	1.48	8682	524	8	220	0	0	0	logfile
✔	7YoJ	33983	2023-09-30	2022-08-01	3.36	3.79	3.58	3.7	0.005	0.87	0.0	0.05	20.71	0.01	2.304	7.98	2.19	5.9	93.6	0.5	-2.03	0.77	0.77	1.75	3.6	0.003	0.63	0.0	0.03	20.35	0.00	2.135	14.63	0.27	5.0	95.0	0.0	0.30	1.03	0.78	0.81	1.97	11545	867	4	216	0	0	0	logfile
✔	7V9X	31829	2023-09-30	2021-08-27	2.82	3.18	—	3.1	0.005	0.63	0.0	0.04	21.16	0.00	2.241	6.09	0.00	4.0	96.0	0.0	0.17	0.75	0.85	3.29	3.1	0.003	0.58	0.0	0.04	22.10	0.00	2.246	6.61	1.03	3.3	96.7	0.0	0.50	0.88	0.72	0.85	2.81	10550	760	9	210	0	0	0	logfile
✔	7V9U	31827	2023-09-29	2021-08-26	3.12	3.31	—	3.2	0.004	0.63	0.0	0.04	22.35	0.01	2.180	10.84	0.00	6.2	93.8	0.0	-1.53	0.75	0.78	3.58	3.2	0.003	0.58	0.0	0.03	22.74	0.00	2.178	10.48	0.18	5.4	94.6	0.0	-0.73	1.23	0.76	0.81	3.41	9354	618	8	209	0	0	0	logfile
✔	6M4H	30078	2023-09-29	2020-03-07	3.9	4.39	—	3.9	0.008	0.89	0.0	0.05	29.18	0.01	1.729	27.61	2.85	3.1	96.7	0.2	-6.02	0.82	0.76	1.36	4.0	0.006	0.78	0.0	0.04	29.95	0.00	2.087	19.84	0.89	3.1	96.9	0.0	0.99	1.75	0.87	0.85	0.92	9420	656	10	206	0	0	0	logfile
✔	8ooA	17008	2023-09-29	2023-04-04	3.18	1.83	3.09	2.8	0.008	1.08	0.0	0.06	28.16	0.01	2.299	5.05	0.00	1.5	98.5	0.0	-2.10	0.75	0.76	3.22	2.8	0.003	0.57	0.0	0.03	28.73	0.00	2.121	7.38	0.45	1.9	98.1	0.0	2.31	1.02	0.77	0.76	2.64	8405	529	8	204	0	0	0	logfile
✔	7Y5W	33627	2023-09-29	2022-06-17	3.5	4.54	3.56	3.7	0.003	0.53	0.0	0.03	27.68	0.00	2.102	12.41	0.00	2.0	98.0	0.0	2.53	0.81	0.70	0.94	3.7	0.005	0.89	0.0	0.04	28.98	0.01	2.069	23.02	0.40	2.0	98.0	0.0	0.85	0.95	0.90	0.85	0.98	8811	579	10	202	0	0	0	logfile
✔	8J6S	36013	2023-09-30	2023-04-26	3.8	5.06	3.99	3.8	0.004	0.79	0.0	0.04	29.74	0.01	1.907	22.08	1.06	3.9	96.1	0.0	-0.40	0.83	0.73	1.29	3.9	0.005	0.83	0.0	0.04	29.71	0.00	1.986	22.77	0.00	3.3	96.7	0.0	0.51	0.72	0.88	0.84	0.57	10030	933	12	197	0	0	0	logfile
✔	6T7A	10391	2023-09-30	2019-10-21	3.7	4.20	3.60	3.7	0.006	0.87	0.0	0.05	25.96	0.01	0.733	6.61	0.00	1.8	98.1	0.1	-3.03	0.85	0.81	1.66	3.7	0.004	0.76	0.0	0.04	26.46	0.00	2.177	14.74	0.47	2.2	97.8	0.0	2.30	1.39	0.86	0.84	1.35	10338	847	11	190	0	0	0	logfile
✔	7LV9	23530	2023-09-28	2021-02-24	4.5	7.82	4.59	4.4	0.003	0.64	0.0	0.04	27.26	0.00	1.334	3.02	0.00	3.2	96.8	0.0	-3.35	0.82	0.66	—	4.4	0.005	0.67	0.0	0.04	29.32	0.00	2.143	21.19	0.00	3.9	96.1	0.0	1.21	1.93	0.90	0.85	—	8238	581	8	190	0	0	0	logfile

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