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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8CSZ | 26976 | 2023-09-29 | 2022-05-13 | 3.2 | 3.55 | 3.13 | 3.3 | 0.005 | 0.67 | 0.0 | 0.04 | 19.39 | 0.00 | 1.962 | 11.72 | 0.00 | 4.9 | 95.1 | 0.0 | -0.97 | 0.84 | 0.86 | 4.03 | 3.3 | 0.004 | 0.58 | 0.0 | 0.03 | 19.16 | 0.00 | 1.962 | 10.18 | 0.71 | 4.9 | 95.1 | 0.0 | -0.25 | 2.17 | 0.84 | 0.88 | 3.60 | 8948 | 494 | 5 | 236 | 3 | 0 | 0 | logfile |
✘ | 8SA4 | 40264 | 2023-09-28 | 2023-03-31 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5193 | 0 | 3 | 236 | 1 | 0 | 0 | logfile |
✔ | 6T7D | 10394 | 2023-09-28 | 2019-10-21 | 4.4 | 4.45 | 4.29 | 4.1 | 0.005 | 0.86 | 0.0 | 0.05 | 32.64 | 0.01 | 2.107 | 2.55 | 0.00 | 2.0 | 98.0 | 0.0 | -2.34 | 0.86 | 0.77 | — | 4.1 | 0.006 | 0.70 | 0.0 | 0.03 | 32.45 | 0.00 | 2.121 | 16.05 | 0.00 | 6.2 | 93.8 | 0.0 | 2.70 | 0.72 | 0.87 | 0.83 | — | 8209 | 853 | 11 | 234 | 0 | 0 | 0 | logfile |
✔ | 8CTL | 26994 | 2023-09-28 | 2022-05-16 | 3.1 | 3.52 | 3.12 | 3.3 | 0.009 | 1.32 | 4.0 | 0.09 | 24.25 | 0.01 | 2.280 | 32.18 | 7.20 | 12.1 | 87.4 | 0.5 | -5.68 | 0.62 | 0.46 | 0.80 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 20.68 | 0.00 | 1.956 | 12.01 | 0.00 | 3.3 | 96.7 | 0.0 | -0.54 | 2.41 | 0.81 | 0.80 | 2.90 | 8138 | 401 | 4 | 233 | 0 | 0 | 0 | logfile |
✔ | 6PoM | 20416 | 2023-09-28 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 17.29 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.29 | 0.0 | 0.06 | 21.60 | 0.01 | 1.918 | 61.40 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.76 | 0.75 | 0.80 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 7UTN | 26782 | 2023-09-28 | 2022-04-27 | 2.74 | 3.33 | 2.90 | 3.1 | 0.007 | 0.68 | 0.0 | 0.04 | 18.57 | 0.00 | 2.080 | 8.58 | 0.00 | 1.8 | 98.2 | 0.0 | 0.01 | 0.86 | 0.88 | 4.65 | 3.1 | 0.002 | 0.52 | 0.0 | 0.03 | 18.32 | 0.00 | 2.194 | 7.85 | 0.58 | 1.5 | 98.5 | 0.0 | 1.03 | 0.32 | 0.82 | 0.84 | 3.64 | 8003 | 397 | 4 | 228 | 0 | 0 | 0 | logfile |
✔ | 7N3o | 24142 | 2023-09-28 | 2021-06-01 | 3.8 | 4.01 | — | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 17.14 | 0.00 | 2.285 | 8.30 | 1.35 | 3.6 | 96.4 | 0.0 | 1.09 | 0.71 | 0.66 | 1.57 | 3.9 | 0.005 | 0.75 | 0.0 | 0.04 | 18.48 | 0.01 | 2.129 | 21.44 | 0.81 | 4.9 | 95.1 | 0.0 | 0.37 | 0.87 | 0.75 | 0.75 | 1.92 | 8295 | 454 | 2 | 222 | 0 | 0 | 0 | logfile |
✔ | 6ZHY | 11221 | 2023-09-29 | 2020-06-24 | 3.0 | 3.57 | 2.97 | 3.1 | 0.005 | 0.91 | 0.0 | 0.06 | 27.29 | 0.01 | 2.316 | 3.82 | 0.21 | 1.5 | 98.5 | 0.0 | 0.65 | 0.90 | 0.87 | 4.24 | 3.1 | 0.004 | 0.62 | 0.0 | 0.03 | 29.00 | 0.00 | 2.105 | 8.70 | 3.20 | 1.6 | 98.4 | 0.0 | 3.33 | 0.59 | 0.91 | 0.90 | 3.34 | 8999 | 562 | 9 | 220 | 0 | 0 | 0 | logfile |
✔ | 7XHT | 33198 | 2023-09-28 | 2022-04-10 | 2.55 | 2.77 | 2.54 | 2.8 | 0.003 | 0.68 | 0.0 | 0.03 | 14.64 | 0.00 | 2.014 | 6.29 | 0.00 | 1.8 | 98.2 | 0.0 | 0.35 | 0.69 | 0.85 | 5.47 | 2.8 | 0.003 | 0.53 | 0.0 | 0.03 | 15.92 | 0.00 | 2.006 | 6.29 | 1.17 | 2.8 | 97.2 | 0.0 | 0.67 | 0.35 | 0.65 | 0.85 | 4.96 | 7839 | 395 | 6 | 220 | 3 | 0 | 0 | logfile |
✔ | 8EU2 | 28602 | 2023-09-29 | 2022-10-18 | 2.93 | 2.77 | 3.14 | 2.1 | 0.005 | 0.82 | 0.0 | 0.05 | 28.19 | 0.01 | 2.381 | 2.44 | 0.00 | 2.5 | 97.5 | 0.0 | -0.81 | 0.82 | 0.81 | 2.88 | 2.1 | 0.004 | 0.65 | 0.0 | 0.03 | 28.79 | 0.01 | 2.284 | 10.98 | 1.37 | 1.4 | 98.6 | 0.0 | 2.68 | 0.43 | 0.84 | 0.84 | 1.68 | 8682 | 524 | 8 | 220 | 0 | 0 | 0 | logfile |
✔ | 8ETV | 28600 | 2023-09-29 | 2022-10-17 | 3.16 | 3.01 | 3.36 | 2.0 | 0.006 | 0.87 | 0.0 | 0.05 | 28.33 | 0.01 | 2.305 | 2.83 | 0.00 | 2.3 | 97.7 | 0.0 | -0.99 | 0.80 | 0.77 | 1.76 | 2.0 | 0.005 | 0.68 | 0.0 | 0.04 | 29.10 | 0.00 | 2.092 | 14.26 | 0.69 | 2.7 | 97.3 | 0.0 | 1.79 | 0.46 | 0.81 | 0.80 | 1.48 | 8682 | 524 | 8 | 220 | 0 | 0 | 0 | logfile |
✔ | 7YoJ | 33983 | 2023-09-30 | 2022-08-01 | 3.36 | 3.79 | 3.58 | 3.7 | 0.005 | 0.87 | 0.0 | 0.05 | 20.71 | 0.01 | 2.304 | 7.98 | 2.19 | 5.9 | 93.6 | 0.5 | -2.03 | 0.77 | 0.77 | 1.75 | 3.6 | 0.003 | 0.63 | 0.0 | 0.03 | 20.35 | 0.00 | 2.135 | 14.63 | 0.27 | 5.0 | 95.0 | 0.0 | 0.30 | 1.03 | 0.78 | 0.81 | 1.97 | 11545 | 867 | 4 | 216 | 0 | 0 | 0 | logfile |
✔ | 7V9X | 31829 | 2023-09-30 | 2021-08-27 | 2.82 | 3.18 | — | 3.1 | 0.005 | 0.63 | 0.0 | 0.04 | 21.16 | 0.00 | 2.241 | 6.09 | 0.00 | 4.0 | 96.0 | 0.0 | 0.17 | 0.75 | 0.85 | 3.29 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 22.10 | 0.00 | 2.246 | 6.61 | 1.03 | 3.3 | 96.7 | 0.0 | 0.50 | 0.88 | 0.72 | 0.85 | 2.81 | 10550 | 760 | 9 | 210 | 0 | 0 | 0 | logfile |
✔ | 7V9U | 31827 | 2023-09-29 | 2021-08-26 | 3.12 | 3.31 | — | 3.2 | 0.004 | 0.63 | 0.0 | 0.04 | 22.35 | 0.01 | 2.180 | 10.84 | 0.00 | 6.2 | 93.8 | 0.0 | -1.53 | 0.75 | 0.78 | 3.58 | 3.2 | 0.003 | 0.58 | 0.0 | 0.03 | 22.74 | 0.00 | 2.178 | 10.48 | 0.18 | 5.4 | 94.6 | 0.0 | -0.73 | 1.23 | 0.76 | 0.81 | 3.41 | 9354 | 618 | 8 | 209 | 0 | 0 | 0 | logfile |
✔ | 6M4H | 30078 | 2023-09-29 | 2020-03-07 | 3.9 | 4.39 | — | 3.9 | 0.008 | 0.89 | 0.0 | 0.05 | 29.18 | 0.01 | 1.729 | 27.61 | 2.85 | 3.1 | 96.7 | 0.2 | -6.02 | 0.82 | 0.76 | 1.36 | 4.0 | 0.006 | 0.78 | 0.0 | 0.04 | 29.95 | 0.00 | 2.087 | 19.84 | 0.89 | 3.1 | 96.9 | 0.0 | 0.99 | 1.75 | 0.87 | 0.85 | 0.92 | 9420 | 656 | 10 | 206 | 0 | 0 | 0 | logfile |
✔ | 8ooA | 17008 | 2023-09-29 | 2023-04-04 | 3.18 | 1.83 | 3.09 | 2.8 | 0.008 | 1.08 | 0.0 | 0.06 | 28.16 | 0.01 | 2.299 | 5.05 | 0.00 | 1.5 | 98.5 | 0.0 | -2.10 | 0.75 | 0.76 | 3.22 | 2.8 | 0.003 | 0.57 | 0.0 | 0.03 | 28.73 | 0.00 | 2.121 | 7.38 | 0.45 | 1.9 | 98.1 | 0.0 | 2.31 | 1.02 | 0.77 | 0.76 | 2.64 | 8405 | 529 | 8 | 204 | 0 | 0 | 0 | logfile |
✔ | 7Y5W | 33627 | 2023-09-29 | 2022-06-17 | 3.5 | 4.54 | 3.56 | 3.7 | 0.003 | 0.53 | 0.0 | 0.03 | 27.68 | 0.00 | 2.102 | 12.41 | 0.00 | 2.0 | 98.0 | 0.0 | 2.53 | 0.81 | 0.70 | 0.94 | 3.7 | 0.005 | 0.89 | 0.0 | 0.04 | 28.98 | 0.01 | 2.069 | 23.02 | 0.40 | 2.0 | 98.0 | 0.0 | 0.85 | 0.95 | 0.90 | 0.85 | 0.98 | 8811 | 579 | 10 | 202 | 0 | 0 | 0 | logfile |
✔ | 8J6S | 36013 | 2023-09-30 | 2023-04-26 | 3.8 | 5.06 | 3.99 | 3.8 | 0.004 | 0.79 | 0.0 | 0.04 | 29.74 | 0.01 | 1.907 | 22.08 | 1.06 | 3.9 | 96.1 | 0.0 | -0.40 | 0.83 | 0.73 | 1.29 | 3.9 | 0.005 | 0.83 | 0.0 | 0.04 | 29.71 | 0.00 | 1.986 | 22.77 | 0.00 | 3.3 | 96.7 | 0.0 | 0.51 | 0.72 | 0.88 | 0.84 | 0.57 | 10030 | 933 | 12 | 197 | 0 | 0 | 0 | logfile |
✔ | 6T7A | 10391 | 2023-09-30 | 2019-10-21 | 3.7 | 4.20 | 3.60 | 3.7 | 0.006 | 0.87 | 0.0 | 0.05 | 25.96 | 0.01 | 0.733 | 6.61 | 0.00 | 1.8 | 98.1 | 0.1 | -3.03 | 0.85 | 0.81 | 1.66 | 3.7 | 0.004 | 0.76 | 0.0 | 0.04 | 26.46 | 0.00 | 2.177 | 14.74 | 0.47 | 2.2 | 97.8 | 0.0 | 2.30 | 1.39 | 0.86 | 0.84 | 1.35 | 10338 | 847 | 11 | 190 | 0 | 0 | 0 | logfile |
✔ | 7LV9 | 23530 | 2023-09-28 | 2021-02-24 | 4.5 | 7.82 | 4.59 | 4.4 | 0.003 | 0.64 | 0.0 | 0.04 | 27.26 | 0.00 | 1.334 | 3.02 | 0.00 | 3.2 | 96.8 | 0.0 | -3.35 | 0.82 | 0.66 | — | 4.4 | 0.005 | 0.67 | 0.0 | 0.04 | 29.32 | 0.00 | 2.143 | 21.19 | 0.00 | 3.9 | 96.1 | 0.0 | 1.21 | 1.93 | 0.90 | 0.85 | — | 8238 | 581 | 8 | 190 | 0 | 0 | 0 | logfile |