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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7QGU | 13959 | 2024-03-17 | 2021-12-10 | 4.75 | 7.20 | — | 5.6 | 0.010 | 1.50 | 1.0 | 0.04 | 24.12 | 0.02 | 1.064 | 11.45 | 0.26 | 6.6 | 91.0 | 2.3 | -1.82 | 0.70 | 0.57 | — | 5.5 | 0.010 | 1.17 | 0.0 | 0.05 | 26.12 | 0.01 | 1.070 | 79.37 | 0.00 | 10.3 | 88.9 | 0.8 | -1.60 | 2.88 | 0.82 | 0.84 | — | 135606 | 5791 | 54 | 4656 | 0 | 0 | 0 | logfile |
✔ | 6oGi | 20058 | 2024-03-21 | 2019-04-02 | 3.4 | 4.58 | — | 2.9 | 0.009 | 1.11 | 0.0 | 0.09 | 22.50 | 0.01 | 2.042 | 15.67 | 0.49 | 10.3 | 89.0 | 0.7 | -4.74 | 0.90 | 0.82 | 1.06 | 3.0 | 0.005 | 0.67 | 0.0 | 0.04 | 23.80 | 0.00 | 1.996 | 26.17 | 3.32 | 10.6 | 89.4 | 0.0 | -2.43 | 1.53 | 0.92 | 0.86 | 0.70 | 144895 | 5752 | 54 | 4656 | 0 | 0 | 0 | logfile |
✔ | 6oGG | 20057 | 2024-03-24 | 2019-04-02 | 4.2 | 5.09 | — | 3.4 | 0.006 | 0.85 | 0.0 | 0.07 | 22.29 | 0.01 | 2.108 | 14.59 | 0.56 | 10.6 | 89.3 | 0.1 | -4.88 | 0.87 | 0.76 | — | 3.4 | 0.004 | 0.70 | 0.0 | 0.04 | 24.36 | 0.01 | 1.818 | 33.27 | 0.00 | 11.7 | 88.3 | 0.0 | -3.20 | 1.79 | 0.88 | 0.82 | — | 147733 | 6113 | 55 | 4655 | 0 | 0 | 0 | logfile |
✔ | 6oGF | 20056 | 2024-03-24 | 2019-04-02 | 3.9 | 4.57 | — | 3.4 | 0.006 | 0.92 | 0.0 | 0.08 | 22.09 | 0.01 | 2.252 | 16.06 | 0.70 | 12.4 | 86.0 | 1.5 | -4.77 | 0.91 | 0.85 | 0.79 | 3.4 | 0.005 | 0.72 | 2.0 | 0.04 | 23.68 | 0.01 | 1.967 | 26.29 | 4.47 | 9.7 | 90.2 | 0.1 | -2.53 | 2.03 | 0.91 | 0.88 | 0.76 | 147733 | 6113 | 55 | 4655 | 0 | 0 | 0 | logfile |
✔ | 7JSS | 22459 | 2024-03-21 | 2020-08-15 | 3.7 | 4.06 | 4.04 | 3.8 | 0.007 | 0.93 | 0.0 | 0.08 | 22.22 | 0.01 | 2.171 | 15.39 | 0.60 | 12.4 | 86.1 | 1.5 | -4.45 | 0.81 | 0.78 | 1.06 | 3.8 | 0.006 | 0.75 | 0.0 | 0.04 | 23.26 | 0.01 | 1.983 | 23.00 | 6.90 | 11.3 | 88.6 | 0.1 | -2.30 | 0.67 | 0.83 | 0.83 | 1.02 | 144890 | 5749 | 54 | 4655 | 0 | 0 | 0 | logfile |
✔ | 8EKC | 28197 | 2024-03-21 | 2022-09-20 | 2.7 | 3.48 | 2.73 | 3.0 | 0.008 | 0.76 | 0.0 | 0.04 | 22.20 | 0.02 | 1.894 | 3.55 | 0.00 | 4.1 | 95.9 | 0.0 | -1.10 | 0.88 | 0.84 | 3.57 | 3.0 | 0.005 | 0.71 | 0.0 | 0.04 | 22.19 | 0.01 | 1.762 | 7.23 | 2.51 | 3.8 | 96.1 | 0.0 | -0.05 | 0.44 | 0.91 | 0.92 | 2.93 | 144544 | 5558 | 88 | 4655 | 719 | 300 | 0 | logfile |
✔ | 7JSW | 22461 | 2024-03-21 | 2020-08-16 | 3.8 | 4.37 | 4.17 | 4.1 | 0.006 | 0.94 | 0.0 | 0.08 | 22.90 | 0.01 | 2.174 | 16.24 | 0.60 | 14.0 | 83.9 | 2.1 | -4.68 | 0.86 | 0.85 | 0.77 | 4.1 | 0.005 | 0.73 | 1.0 | 0.04 | 23.85 | 0.01 | 2.012 | 29.37 | 7.14 | 11.3 | 88.5 | 0.2 | -2.69 | 1.05 | 0.87 | 0.85 | 0.71 | 144808 | 5737 | 54 | 4655 | 0 | 0 | 0 | logfile |
✔ | 7JSZ | 22464 | 2024-03-24 | 2020-08-16 | 3.7 | 4.30 | 3.93 | 4.0 | 0.005 | 0.96 | 2.0 | 0.08 | 22.12 | 0.01 | 2.227 | 11.91 | 0.88 | 11.0 | 87.0 | 2.0 | -5.09 | 0.86 | 0.85 | 1.01 | 4.0 | 0.004 | 0.72 | 0.0 | 0.04 | 23.31 | 0.01 | 1.964 | 24.94 | 5.97 | 10.6 | 89.2 | 0.2 | -2.50 | 1.09 | 0.87 | 0.86 | 0.79 | 147860 | 6144 | 57 | 4655 | 0 | 0 | 0 | logfile |
✔ | 7NSo | 12573 | 2024-03-21 | 2021-03-08 | 2.9 | 3.04 | 2.97 | 3.0 | 0.008 | 0.99 | 0.0 | 0.08 | 23.59 | 0.01 | 1.444 | 4.46 | 0.67 | 7.1 | 92.6 | 0.3 | -3.62 | 0.81 | 0.83 | 2.59 | 3.0 | 0.007 | 0.76 | 0.0 | 0.05 | 23.52 | 0.01 | 1.974 | 10.40 | 5.95 | 7.9 | 91.9 | 0.1 | -1.41 | 0.36 | 0.83 | 0.87 | 2.26 | 144454 | 5691 | 56 | 4653 | 1 | 0 | 0 | logfile |
✔ | 7JT3 | 22472 | 2024-03-24 | 2020-08-17 | 3.7 | 4.04 | 4.23 | 3.8 | 0.006 | 0.99 | 3.0 | 0.08 | 22.10 | 0.01 | 2.077 | 12.75 | 1.24 | 12.9 | 85.4 | 1.7 | -5.28 | 0.83 | 0.78 | 0.65 | 3.8 | 0.005 | 0.76 | 0.0 | 0.04 | 23.92 | 0.01 | 1.974 | 30.76 | 6.24 | 12.6 | 87.3 | 0.1 | -3.22 | 1.37 | 0.86 | 0.80 | 0.50 | 148603 | 6250 | 58 | 4652 | 0 | 0 | 0 | logfile |
✔ | 7oiF | 12928 | 2024-03-22 | 2021-05-11 | 3.0 | 4.31 | 3.02 | 2.9 | 0.018 | 1.18 | 1.0 | 0.08 | 22.84 | 0.02 | 1.454 | 7.90 | 0.21 | 3.7 | 96.1 | 0.2 | -3.85 | 0.87 | 0.80 | 2.41 | 2.9 | 0.005 | 0.78 | 0.0 | 0.04 | 22.95 | 0.01 | 1.728 | 18.08 | 2.82 | 4.4 | 95.6 | 0.0 | -0.51 | 0.60 | 0.93 | 0.90 | 1.94 | 145152 | 5738 | 70 | 4651 | 418 | 0 | 0 | logfile |
✔ | 7oiG | 12929 | 2024-03-22 | 2021-05-11 | 3.2 | 3.93 | 3.16 | 3.0 | 0.011 | 1.02 | 0.0 | 0.06 | 22.87 | 0.02 | 1.449 | 8.53 | 0.21 | 3.6 | 96.2 | 0.1 | -3.86 | 0.88 | 0.85 | 2.63 | 3.0 | 0.004 | 0.75 | 2.0 | 0.03 | 23.05 | 0.01 | 1.115 | 16.05 | 3.92 | 3.6 | 96.4 | 0.0 | 0.00 | 1.61 | 0.91 | 0.90 | 2.35 | 145136 | 5738 | 68 | 4651 | 402 | 0 | 0 | logfile |
✔ | 7NWW | 12636 | 2024-03-22 | 2021-03-17 | 3.05 | 3.83 | 3.02 | 2.9 | 0.010 | 0.97 | 0.0 | 0.06 | 22.83 | 0.02 | 1.667 | 7.33 | 0.49 | 3.6 | 96.3 | 0.2 | -3.85 | 0.89 | 0.86 | 3.17 | 3.0 | 0.006 | 0.74 | 0.0 | 0.04 | 22.90 | 0.01 | 1.023 | 14.47 | 2.90 | 3.9 | 96.1 | 0.0 | -0.13 | 2.45 | 0.92 | 0.91 | 2.72 | 145149 | 5738 | 67 | 4651 | 415 | 0 | 0 | logfile |
✔ | 7M5D | 23673 | 2024-03-02 | 2021-03-23 | 2.8 | 2.87 | — | 2.9 | 0.007 | 1.27 | 14.0 | 0.07 | 22.74 | 0.02 | 2.254 | 3.03 | 0.02 | 2.2 | 97.7 | 0.1 | -0.65 | 0.73 | 0.80 | 2.44 | 2.9 | 0.007 | 0.75 | 0.0 | 0.04 | 23.15 | 0.01 | 1.960 | 9.34 | 3.91 | 4.5 | 95.5 | 0.0 | -0.57 | 0.56 | 0.78 | 0.87 | 3.01 | 153460 | 6867 | 60 | 4648 | 1 | 0 | 0 | logfile |
✔ | 7oT5 | 13055 | 2024-03-22 | 2021-06-09 | 2.9 | 3.55 | 2.89 | 2.7 | 0.010 | 0.94 | 2.0 | 0.06 | 22.78 | 0.03 | 1.457 | 7.15 | 0.23 | 3.6 | 96.2 | 0.2 | -3.87 | 0.85 | 0.82 | 3.35 | 2.8 | 0.006 | 0.77 | 0.0 | 0.04 | 22.94 | 0.01 | 1.819 | 14.47 | 3.13 | 3.9 | 96.1 | 0.0 | -0.17 | 0.57 | 0.91 | 0.90 | 2.78 | 145365 | 5778 | 69 | 4648 | 396 | 0 | 0 | logfile |
✔ | 7oii | 12930 | 2024-03-22 | 2021-05-11 | 3.0 | 3.56 | 2.91 | 2.7 | 0.017 | 1.20 | 0.0 | 0.07 | 22.80 | 0.03 | 1.514 | 7.87 | 0.23 | 3.6 | 96.2 | 0.2 | -3.84 | 0.85 | 0.83 | 3.42 | 2.8 | 0.006 | 0.81 | 1.0 | 0.04 | 22.96 | 0.01 | 1.257 | 14.72 | 3.73 | 4.2 | 95.8 | 0.0 | -0.24 | 1.21 | 0.90 | 0.90 | 2.87 | 145171 | 5754 | 69 | 4648 | 424 | 0 | 0 | logfile |
✔ | 5KCR | 8237 | 2024-03-22 | 2016-06-06 | 3.6 | 4.09 | — | 4.0 | 0.006 | 0.62 | 0.0 | 0.07 | 22.21 | 0.01 | 2.027 | 6.59 | 0.46 | 5.7 | 92.7 | 1.7 | -2.61 | 0.75 | 0.79 | 1.17 | 4.0 | 0.006 | 0.77 | 0.0 | 0.04 | 22.79 | 0.01 | 1.216 | 18.79 | 4.45 | 6.5 | 93.0 | 0.5 | -0.81 | 0.93 | 0.77 | 0.85 | 1.42 | 145689 | 5854 | 57 | 4646 | 2 | 0 | 0 | logfile |
✔ | 8FMW | 29298 | 2024-03-24 | 2022-12-25 | 2.86 | 3.40 | 3.00 | 3.1 | 0.005 | 0.86 | 0.0 | 0.08 | 22.49 | 0.00 | 2.015 | 7.35 | 0.04 | 6.5 | 93.5 | 0.0 | -0.67 | 0.87 | 0.86 | 2.66 | 3.1 | 0.003 | 0.88 | 0.0 | 0.08 | 22.71 | 0.00 | 2.033 | 11.13 | 2.50 | 4.5 | 95.5 | 0.0 | 0.20 | 1.17 | 0.88 | 0.88 | 2.15 | 147910 | 6347 | 62 | 4646 | 4 | 0 | 0 | logfile |
✔ | 6SZS | 10353 | 2024-03-23 | 2019-10-02 | 3.06 | 3.27 | — | 3.2 | 0.008 | 0.93 | 1.0 | 0.05 | 23.48 | 0.01 | 2.211 | 4.87 | 0.56 | 7.5 | 92.5 | 0.1 | -3.63 | 0.88 | 0.85 | 2.68 | 3.2 | 0.006 | 0.66 | 2.0 | 0.04 | 23.41 | 0.00 | 1.792 | 12.34 | 4.82 | 7.6 | 92.4 | 0.1 | -1.12 | 0.32 | 0.89 | 0.87 | 2.28 | 147361 | 6100 | 56 | 4646 | 0 | 0 | 0 | logfile |
✔ | 3J9Y | 6311 | 2024-03-25 | 2015-03-23 | 3.9 | 3.83 | — | 3.9 | 0.006 | 0.84 | 0.0 | 0.04 | 23.32 | 0.02 | 0.974 | 10.29 | 3.21 | 10.9 | 85.6 | 3.4 | -3.83 | 0.76 | 0.77 | 0.68 | 3.7 | 0.005 | 0.86 | 1.0 | 0.04 | 23.47 | 0.01 | 1.901 | 23.67 | 7.60 | 11.2 | 88.1 | 0.6 | -2.24 | 1.55 | 0.79 | 0.84 | 0.85 | 148915 | 6657 | 58 | 4645 | 0 | 0 | 0 | logfile |