Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6N8o	0374	2023-07-12	2018-11-29	3.5	3.74	—	3.6	0.007	0.89	2.0	0.05	14.62	0.01	1.297	2.91	0.56	7.2	92.4	0.4	-4.60	0.82	0.89	3.44	3.6	0.004	0.61	0.0	0.04	15.61	0.00	2.092	7.91	0.46	7.8	92.0	0.2	-1.26	1.99	0.81	0.88	2.56	133453	7292	49	3480	302	0	0	logfile
✔	6N8L	0371	2023-07-11	2018-11-29	3.6	3.79	—	3.7	0.007	0.93	0.0	0.05	15.30	0.01	2.200	3.54	0.64	7.3	92.2	0.5	-4.50	0.80	0.87	3.56	3.7	0.005	0.67	1.0	0.04	16.35	0.01	2.055	10.32	0.69	8.4	91.4	0.2	-1.49	2.29	0.80	0.87	2.37	129926	6884	48	3479	210	0	0	logfile
✔	6N8K	0370	2023-07-11	2018-11-29	3.6	3.80	—	3.7	0.006	0.91	0.0	0.05	15.37	0.01	1.873	3.81	0.51	6.6	93.0	0.4	-4.28	0.79	0.87	2.97	3.7	0.005	0.68	0.0	0.04	16.48	0.00	1.999	10.88	0.82	8.6	91.2	0.1	-1.17	0.65	0.80	0.87	1.96	132821	7231	49	3479	212	0	0	logfile
✔	3J79	2660	2023-07-09	2014-06-02	3.2	3.25	3.13	3.2	0.007	1.31	43.0	0.10	19.59	0.01	1.505	4.40	11.66	7.2	90.4	2.4	-1.45	0.53	0.71	0.94	3.2	0.003	0.64	0.0	0.04	17.82	0.01	1.892	13.81	0.62	5.4	94.1	0.5	-0.13	0.96	0.65	0.85	1.71	124514	6244	55	3460	168	0	0	logfile
✔	6Ri5	4884	2023-07-11	2019-04-23	3.3	3.42	—	3.3	0.016	1.15	6.0	0.07	16.12	0.01	1.267	4.37	1.01	9.6	90.2	0.2	-4.60	0.82	0.81	2.56	3.3	0.003	0.58	0.0	0.03	16.14	0.00	2.072	9.57	0.47	5.5	94.5	0.1	-1.15	0.72	0.84	0.86	2.22	130139	7034	54	3424	217	0	0	logfile
✔	6QTZ	4636	2023-07-11	2019-02-26	3.5	3.65	—	3.6	0.006	0.81	8.0	0.04	15.79	0.01	1.165	4.32	0.66	7.3	92.5	0.2	-4.44	0.83	0.84	2.55	3.6	0.002	0.53	0.0	0.03	15.96	0.00	2.060	9.26	0.45	5.4	94.6	0.1	-1.24	0.50	0.84	0.85	1.85	130259	7050	54	3423	217	0	0	logfile
✔	6RZZ	10068	2023-07-12	2019-06-13	3.2	3.30	—	3.2	0.007	0.89	4.0	0.05	16.10	0.01	1.568	4.26	1.18	6.3	93.6	0.1	-4.04	0.86	0.88	3.21	3.2	0.008	0.69	0.0	0.04	16.33	0.01	2.024	8.48	0.78	7.0	92.9	0.0	-1.74	1.11	0.87	0.90	2.87	134359	7586	55	3423	220	0	0	logfile
✔	6S05	10071	2023-07-10	2019-06-13	3.9	3.99	—	3.9	0.008	1.03	5.0	0.05	16.94	0.01	0.906	7.79	1.92	9.4	90.4	0.2	-4.72	0.82	0.84	1.89	3.9	0.007	0.75	0.0	0.04	16.93	0.01	2.007	16.08	1.03	10.0	89.9	0.0	-2.47	1.15	0.82	0.84	1.47	129144	6919	53	3423	218	0	0	logfile
✔	6QiK	4560	2023-07-10	2019-01-20	3.1	3.35	—	3.3	0.014	0.99	2.0	0.06	15.84	0.01	1.872	3.52	0.80	8.3	91.5	0.2	-4.17	0.84	0.86	3.77	3.3	0.005	0.59	0.0	0.04	15.98	0.00	2.062	7.45	0.50	6.0	94.0	0.0	-1.29	0.43	0.85	0.89	3.24	128569	6843	53	3423	217	0	0	logfile
✔	3JCS	6583	2023-07-07	2016-01-21	2.8	3.07	—	3.0	0.009	0.98	1.0	0.05	19.59	0.03	1.093	24.89	1.41	11.8	88.0	0.2	-5.35	0.72	0.78	3.98	3.0	0.007	0.87	0.0	0.04	19.74	0.01	1.858	17.70	3.25	10.3	89.7	0.1	-2.53	0.54	0.71	0.80	2.77	117257	5847	74	3420	109	144	0	logfile
✔	7BTB	30174	2023-07-23	2020-04-01	3.22	3.27	—	3.2	0.006	0.81	0.0	0.05	18.73	0.01	1.986	9.80	9.99	10.9	88.7	0.4	-4.04	0.67	0.80	1.75	3.2	0.004	0.70	0.0	0.04	18.47	0.01	2.000	9.19	0.51	10.2	89.5	0.2	-1.74	0.37	0.68	0.83	1.57	147931	9417	58	3402	7	0	0	logfile
✔	5XXB	6778	2023-07-08	2017-07-03	3.17	3.22	—	3.2	0.006	1.07	5.0	0.09	17.43	0.00	1.261	4.91	4.74	7.1	91.3	1.5	-3.54	0.65	0.77	2.19	3.2	0.009	0.86	0.0	0.05	17.10	0.01	1.983	9.68	0.81	7.7	91.7	0.6	-1.71	0.63	0.82	0.87	1.85	121433	6215	44	3352	0	0	0	logfile
✔	7UG6	26485	2023-07-16	2022-03-24	2.9	2.56	3.01	2.9	0.010	0.89	0.0	0.05	16.41	0.01	2.043	9.51	0.01	4.6	95.4	0.0	-1.03	0.77	0.86	4.01	2.9	0.006	0.66	0.0	0.04	17.11	0.00	2.002	12.03	2.23	4.1	95.9	0.0	0.16	0.32	0.77	0.87	3.21	140950	8738	53	3338	1	0	0	logfile
✔	6N8J	0369	2023-07-11	2018-11-29	3.5	3.75	—	3.6	0.007	0.95	0.0	0.05	15.15	0.01	1.297	3.61	0.51	7.3	92.4	0.3	-4.65	0.82	0.87	3.28	3.6	0.006	0.68	0.0	0.04	16.08	0.00	1.822	9.96	0.39	8.7	91.1	0.1	-1.43	1.25	0.82	0.87	2.28	132554	7675	51	3326	96	0	0	logfile
✔	6YLG	10838	2023-07-22	2020-04-07	3.0	3.12	3.00	3.0	0.004	0.87	18.0	0.08	16.78	0.01	1.432	4.86	0.17	6.8	92.8	0.4	-2.93	0.80	0.87	3.34	3.0	0.004	0.63	0.0	0.04	17.28	0.00	1.806	8.48	4.14	6.8	93.1	0.1	-0.45	0.49	0.81	0.90	2.86	147190	9666	61	3310	8	0	0	logfile
✔	7BT6	30170	2023-07-12	2020-03-31	3.12	3.18	—	3.1	0.006	0.77	0.0	0.04	18.45	0.01	1.797	8.80	9.89	9.5	90.1	0.4	-4.14	0.73	0.83	2.12	3.1	0.004	0.69	0.0	0.04	18.09	0.01	1.803	8.46	0.36	9.2	90.6	0.2	-1.93	1.42	0.75	0.86	1.99	133299	8031	52	3241	7	0	0	logfile
✔	5o60	3750	2023-07-17	2017-06-02	3.18	3.26	—	3.2	0.008	1.12	0.0	0.05	17.44	0.01	1.463	7.03	10.34	4.2	95.6	0.2	-3.02	0.76	0.89	2.25	3.2	0.004	0.63	0.0	0.04	16.94	0.00	1.826	10.25	0.92	4.3	95.7	0.0	-0.47	0.60	0.75	0.87	1.90	98153	3682	47	3240	412	0	0	logfile
✔	7Y41	33599	2023-07-17	2022-06-13	4.1	4.02	3.07	3.4	0.004	0.63	0.0	0.03	16.59	0.01	1.204	15.20	0.00	4.4	95.6	0.0	-0.39	0.87	0.86	—	3.4	0.006	0.67	0.0	0.04	16.41	0.01	1.015	16.01	0.04	5.5	94.5	0.0	-0.69	1.48	0.87	0.87	—	97056	3529	46	3237	411	0	0	logfile
✔	6DZP	8937	2023-07-17	2018-07-05	3.42	3.50	—	3.4	0.012	1.08	1.0	0.06	15.97	0.01	1.028	6.73	0.60	9.8	89.2	1.0	-4.67	0.79	0.82	3.24	3.4	0.006	0.69	0.0	0.04	16.38	0.01	2.041	9.98	0.57	7.6	92.3	0.1	-1.57	3.28	0.82	0.86	2.35	98097	3715	34	3237	0	0	0	logfile
✔	7S0S	24792	2023-07-17	2021-08-31	3.05	3.10	—	3.1	0.008	0.83	0.0	0.05	16.22	0.01	1.722	9.76	1.24	6.2	93.8	0.0	-1.73	0.58	0.66	0.70	3.1	0.006	0.72	0.0	0.04	16.38	0.01	1.258	9.45	0.83	5.3	94.7	0.0	-1.38	0.96	0.70	0.85	2.54	100057	3946	46	3236	407	0	0	logfile

• ← previous
• Page 9 of 500
• next →