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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8AN3 | 15531 | 2024-03-11 | 2022-08-04 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7SPC | 24770 | 2024-03-21 | 2021-11-02 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7ToP | 26034 | 2024-03-15 | 2022-01-24 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6QCM | 4508 | 2024-03-10 | 2018-12-28 | 4.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7ZRZ | 14923 | 2024-03-11 | 2022-05-05 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7ZTA | 14956 | 2024-03-25 | 2022-05-09 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7SPi | 24771 | 2024-03-11 | 2021-11-02 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8HL2 | 34867 | 2024-03-10 | 2022-11-28 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8HL1 | 34866 | 2024-03-10 | 2022-11-28 | 3.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 6oEF | 20020 | 2024-03-25 | 2019-03-27 | 3.8 | 3.98 | — | 3.8 | 0.007 | 1.67 | 0.0 | 0.07 | 11.76 | 0.01 | 2.376 | 3.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.47 | 0.78 | — | 3.8 | 0.006 | 1.21 | 0.0 | 0.05 | 6.00 | 0.00 | 2.197 | 8.15 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.49 | 0.80 | — | 51240 | 0 | 14 | 0 | 10248 | 0 | 0 | logfile |
✔ | 3J9L | 2871 | 2024-03-11 | 2015-02-04 | 4.0 | 4.10 | — | 4.0 | 0.022 | 1.96 | 105.0 | 0.12 | 19.79 | 0.01 | 1.058 | 81.48 | 27.30 | 10.5 | 88.6 | 0.9 | -4.09 | 0.66 | 0.68 | — | 4.0 | 0.045 | 3.09 | 64.0 | 0.12 | 21.30 | 0.02 | 1.887 | 101.09 | 29.26 | 40.4 | 58.0 | 1.7 | -7.66 | 2.88 | 0.73 | 0.82 | — | 112951 | 8688 | 31 | 0 | 8320 | 0 | 0 | logfile |
✔ | 3J9K | 2870 | 2024-03-15 | 2015-02-04 | 4.1 | 4.22 | — | 4.1 | 0.022 | 2.13 | 128.0 | 0.13 | 20.83 | 0.01 | 1.058 | 99.51 | 29.75 | 12.8 | 86.2 | 1.0 | -3.18 | 0.68 | 0.68 | — | 4.1 | 0.004 | 0.77 | 0.0 | 0.04 | 13.74 | 0.00 | 2.049 | 18.15 | 0.00 | 5.8 | 94.1 | 0.2 | -1.17 | 1.16 | 0.70 | 0.70 | — | 126512 | 10352 | 48 | 0 | 8304 | 0 | 0 | logfile |
✔ | 6oEH | 20020 | 2024-03-22 | 2019-03-27 | 3.8 | 3.93 | — | 3.7 | 0.010 | 1.38 | 0.0 | 0.07 | 11.62 | 0.01 | 2.381 | 2.81 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.77 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.04 | 5.09 | 0.00 | 2.203 | 12.28 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.52 | 0.40 | 0.80 | — | 32900 | 0 | 14 | 0 | 6580 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2024-03-20 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.47 | 0.00 | 2.131 | 22.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 6oDJ | 20021 | 2024-03-19 | 2019-03-26 | 3.5 | 3.75 | — | 3.7 | 0.009 | 1.50 | 0.0 | 0.07 | 11.32 | 0.01 | 2.438 | 2.03 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.81 | — | 3.7 | 0.012 | 1.73 | 0.0 | 0.06 | 7.96 | 0.00 | 2.090 | 10.56 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.82 | 0.83 | — | 25415 | 0 | 17 | 0 | 5083 | 0 | 0 | logfile |
✔ | 5WYK | 6696 | 2024-03-27 | 2017-01-13 | 4.5 | 4.62 | — | 4.5 | 0.005 | 1.07 | 0.0 | 0.05 | 17.92 | 0.01 | 1.079 | 8.26 | 0.28 | 8.5 | 91.2 | 0.3 | -4.11 | 0.53 | 0.55 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.04 | 18.27 | 0.00 | 2.026 | 14.45 | 0.05 | 8.2 | 91.7 | 0.1 | -1.86 | 0.95 | 0.61 | 0.68 | — | 150760 | 11513 | 58 | 1619 | 5034 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2024-03-12 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✔ | 5TAQ | 8382 | 2024-03-14 | 2016-09-10 | 4.1 | 4.24 | 4.25 | 4.1 | 0.005 | 0.97 | 0.0 | 0.05 | 10.31 | 0.01 | 1.373 | 4.58 | 0.43 | 10.9 | 88.9 | 0.2 | -5.26 | 0.76 | 0.78 | — | 4.1 | 0.003 | 0.74 | 0.0 | 0.04 | 12.28 | 0.00 | 2.116 | 11.49 | 0.00 | 9.5 | 90.4 | 0.1 | -1.68 | 1.95 | 0.77 | 0.79 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 5TA3 | 8377 | 2024-03-14 | 2016-09-09 | 4.4 | 4.71 | 4.62 | 4.5 | 0.004 | 0.90 | 0.0 | 0.05 | 10.08 | 0.01 | 1.374 | 5.28 | 0.54 | 10.8 | 89.1 | 0.1 | -4.86 | 0.81 | 0.78 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 11.99 | 0.00 | 2.108 | 14.68 | 0.00 | 10.7 | 89.2 | 0.1 | -1.24 | 1.50 | 0.81 | 0.79 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 5TAL | 8378 | 2024-03-14 | 2016-09-10 | 4.3 | 4.43 | 4.52 | 4.3 | 0.005 | 0.92 | 0.0 | 0.05 | 10.26 | 0.01 | 1.373 | 5.27 | 0.62 | 10.5 | 89.3 | 0.1 | -5.03 | 0.79 | 0.78 | — | 4.2 | 0.004 | 0.75 | 0.0 | 0.04 | 12.16 | 0.00 | 2.033 | 15.16 | 0.01 | 11.7 | 88.1 | 0.1 | -1.61 | 0.84 | 0.80 | 0.80 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |