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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7SN9 | 25215 | 2023-12-10 | 2021-10-27 | 3.5 | 4.01 | — | 3.8 | 0.002 | 0.52 | 0.0 | 0.04 | 13.55 | 0.00 | 2.135 | 9.66 | 0.20 | 5.5 | 94.5 | 0.0 | 2.56 | 0.59 | 0.85 | 2.04 | 3.8 | 0.004 | 0.59 | 0.0 | 0.04 | 15.06 | 0.00 | 2.108 | 10.71 | 0.42 | 7.6 | 92.4 | 0.0 | 1.99 | 0.40 | 0.60 | 0.87 | 1.95 | 119154 | 16548 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DUJ | 27721 | 2023-12-07 | 2022-07-27 | 3.7 | 3.96 | 3.84 | 3.8 | 0.003 | 0.57 | 0.0 | 0.04 | 14.44 | 0.00 | 2.200 | 8.18 | 1.25 | 1.5 | 98.5 | 0.0 | 2.77 | 0.78 | 0.71 | 0.63 | 3.8 | 0.005 | 0.64 | 0.0 | 0.04 | 14.38 | 0.00 | 1.937 | 10.86 | 0.59 | 2.6 | 97.4 | 0.0 | 2.38 | 0.45 | 0.82 | 0.79 | 1.09 | 106156 | 16523 | 17 | 0 | 16 | 0 | 0 | logfile |
✔ | 7K5B | 22679 | 2023-12-10 | 2020-09-16 | 4.5 | 4.62 | — | 3.9 | 0.018 | 1.93 | 50.0 | 0.10 | 12.82 | 0.01 | 0.384 | 37.45 | 2.43 | 4.6 | 94.6 | 0.8 | -0.04 | 0.66 | 0.56 | — | 4.0 | 0.007 | 0.59 | 0.0 | 0.04 | 12.49 | 0.00 | 1.778 | 66.02 | 0.00 | 4.5 | 95.2 | 0.3 | 1.68 | 2.18 | 0.74 | 0.79 | — | 119573 | 15602 | 21 | 0 | 18 | 0 | 156 | logfile |
✔ | 6X62 | 22068 | 2023-12-08 | 2020-05-27 | 3.5 | 3.69 | — | 3.7 | 0.014 | 1.87 | 45.0 | 0.09 | 15.63 | 0.01 | 2.185 | 6.98 | 4.90 | 8.5 | 91.5 | 0.0 | -3.87 | 0.65 | 0.64 | 0.52 | 3.6 | 0.004 | 0.87 | 0.0 | 0.05 | 16.24 | 0.00 | 1.996 | 20.45 | 0.90 | 6.4 | 93.6 | 0.0 | -1.71 | 1.27 | 0.74 | 0.82 | 1.24 | 109070 | 15548 | 117 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X66 | 22071 | 2023-12-08 | 2020-05-27 | 4.2 | 6.75 | — | 8.4 | 0.016 | 1.73 | 27.0 | 0.08 | 14.04 | 0.01 | 2.162 | 21.79 | 0.38 | 12.3 | 87.7 | 0.0 | -3.77 | 0.72 | 0.45 | — | 4.2 | 0.004 | 0.84 | 0.0 | 0.05 | 12.78 | 0.00 | 1.926 | 28.73 | 0.02 | 8.6 | 91.3 | 0.1 | -2.41 | 2.90 | 0.78 | 0.63 | — | 109070 | 15548 | 117 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GKZ | 9519 | 2023-12-08 | 2016-07-07 | 4.0 | 4.10 | — | 4.0 | 0.019 | 1.71 | 36.0 | 0.11 | 11.29 | 0.01 | 1.755 | 15.04 | 0.51 | 6.5 | 91.2 | 2.3 | -2.89 | 0.72 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111000 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 5GL0 | 9520 | 2023-12-08 | 2016-07-07 | 4.2 | 4.40 | — | 4.2 | 0.018 | 1.72 | 17.0 | 0.10 | 11.34 | 0.01 | 1.957 | 21.25 | 0.51 | 6.5 | 90.6 | 2.9 | -2.58 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111000 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 5GKY | 9518 | 2023-12-08 | 2016-07-07 | 3.8 | 4.18 | — | 4.0 | 0.017 | 1.70 | 19.0 | 0.10 | 11.29 | 0.01 | 1.789 | 19.04 | 0.51 | 5.8 | 91.8 | 2.5 | -2.71 | 0.73 | 0.79 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111036 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6JiY | 9837 | 2023-12-09 | 2019-02-24 | 3.9 | 4.05 | — | 3.9 | 0.008 | 1.06 | 1.0 | 0.05 | 15.54 | 0.01 | 2.203 | 7.76 | 0.47 | 12.2 | 87.5 | 0.2 | -5.76 | 0.73 | 0.78 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115288 | 15056 | 20 | 0 | 32 | 0 | 0 | logfile |
✘ | 6Ji8 | 9833 | 2023-12-09 | 2019-02-20 | 3.6 | 3.80 | — | 3.7 | 0.010 | 1.26 | 8.0 | 0.06 | 11.98 | 0.01 | 2.196 | 8.60 | 1.03 | 10.5 | 89.0 | 0.5 | -4.77 | 0.73 | 0.77 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115060 | 15024 | 16 | 0 | 4 | 0 | 0 | logfile |
✘ | 6Jii | 9834 | 2023-12-09 | 2019-02-21 | 4.2 | 4.38 | — | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 11.51 | 0.01 | 2.208 | 7.63 | 0.57 | 11.2 | 88.4 | 0.4 | -4.07 | 0.78 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115028 | 15012 | 16 | 0 | 16 | 0 | 0 | logfile |
✔ | 6M2W | 30067 | 2023-12-10 | 2020-03-01 | 3.8 | 2.59 | 3.89 | 2.6 | 0.006 | 1.08 | 0.0 | 0.05 | 15.67 | 0.01 | 2.276 | 3.96 | 3.59 | 3.1 | 96.9 | 0.0 | -5.38 | 0.77 | 0.64 | 0.21 | 2.1 | 0.006 | 0.71 | 0.0 | 0.04 | 15.64 | 0.00 | 2.118 | 10.39 | 0.43 | 3.5 | 96.5 | 0.0 | -0.09 | 1.84 | 0.83 | 0.80 | 2.25 | 120452 | 14972 | 16 | 0 | 1828 | 0 | 0 | logfile |
✔ | 7SC9 | 25030 | 2023-12-10 | 2021-09-27 | 2.6 | 3.71 | 2.70 | 3.0 | 0.005 | 0.63 | 0.0 | 0.04 | 13.31 | 0.01 | 2.039 | 38.58 | 0.01 | 2.7 | 97.2 | 0.0 | 2.39 | 0.80 | 0.82 | 1.56 | 3.0 | 0.003 | 0.81 | 0.0 | 0.04 | 15.76 | 0.00 | 2.027 | 18.61 | 1.76 | 2.7 | 97.2 | 0.1 | 1.40 | 0.60 | 0.80 | 0.83 | 1.26 | 117262 | 14948 | 164 | 0 | 76 | 0 | 0 | logfile |
✔ | 6Q16 | 20556 | 2023-12-10 | 2019-08-02 | 4.1 | 4.11 | — | 4.1 | 0.007 | 1.05 | 0.0 | 0.06 | 14.24 | 0.01 | 2.214 | 3.99 | 0.67 | 3.6 | 96.4 | 0.0 | -5.13 | 0.85 | 0.83 | — | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 13.91 | 0.00 | 2.101 | 9.20 | 0.01 | 3.7 | 96.3 | 0.0 | -0.13 | 0.76 | 0.86 | 0.84 | — | 118198 | 14787 | 93 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ES4 | 28562 | 2023-12-08 | 2022-10-13 | 3.3 | 3.43 | 3.25 | 5.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.99 | 0.00 | 0.946 | 19.53 | 0.00 | 3.7 | 96.2 | 0.0 | 0.75 | 0.36 | 0.16 | 0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110772 | 14766 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X35 | 22018 | 2023-12-08 | 2020-05-21 | 4.2 | 4.14 | — | 4.2 | 0.001 | 0.37 | 0.0 | 0.03 | 8.42 | 0.00 | 2.202 | 3.37 | 0.05 | 1.8 | 98.1 | 0.0 | -1.11 | 0.52 | 0.67 | — | 4.1 | 0.003 | 0.64 | 0.0 | 0.04 | 11.49 | 0.00 | 2.229 | 8.53 | 0.02 | 3.2 | 96.8 | 0.0 | 1.06 | 1.69 | 0.57 | 0.72 | — | 111888 | 14740 | 16 | 0 | 1432 | 0 | 0 | logfile |
✔ | 8CXM | 27060 | 2023-12-08 | 2022-05-21 | 3.21 | 3.69 | 3.21 | 3.6 | 0.003 | 0.50 | 0.0 | 0.03 | 14.84 | 0.00 | 2.093 | 8.38 | 0.06 | 4.1 | 95.9 | 0.0 | 3.68 | 0.56 | 0.87 | 1.34 | 3.5 | 0.003 | 0.53 | 0.0 | 0.03 | 16.26 | 0.00 | 2.108 | 6.36 | 0.15 | 3.9 | 96.1 | 0.0 | 4.62 | 1.14 | 0.58 | 0.89 | 1.41 | 109560 | 14685 | 55 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JiU | 9836 | 2023-12-08 | 2019-02-23 | 4.2 | 4.52 | — | 4.2 | 0.006 | 1.01 | 9.0 | 0.05 | 15.69 | 0.01 | 2.218 | 10.69 | 0.51 | 10.3 | 89.5 | 0.2 | -5.44 | 0.78 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112212 | 14684 | 20 | 0 | 24 | 0 | 0 | logfile |
✔ | 7YCX | 33741 | 2023-12-08 | 2022-07-02 | 4.18 | 4.23 | 4.26 | 4.0 | 0.004 | 0.63 | 1.0 | 0.04 | 14.14 | 0.00 | 1.722 | 11.71 | 0.18 | 5.5 | 94.3 | 0.2 | 0.51 | 0.85 | 0.76 | — | 4.0 | 0.003 | 0.64 | 0.0 | 0.04 | 14.38 | 0.00 | 1.822 | 12.09 | 0.03 | 4.8 | 95.1 | 0.1 | 0.77 | 0.48 | 0.87 | 0.80 | — | 113089 | 14682 | 42 | 104 | 69 | 0 | 0 | logfile |
✘ | 6JRS | 9880 | 2023-12-08 | 2019-04-05 | 3.7 | 3.86 | — | 3.7 | 0.010 | 1.08 | 0.0 | 0.06 | 16.41 | 0.01 | 2.225 | 8.77 | 0.90 | 12.4 | 87.2 | 0.3 | -5.87 | 0.74 | 0.80 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112168 | 14652 | 20 | 0 | 24 | 0 | 0 | logfile |