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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6ToA | 10542 | 2023-02-26 | 2019-12-11 | 3.47 | 3.57 | — | 3.5 | 0.009 | 1.24 | 0.0 | 0.07 | 10.85 | 0.01 | 2.110 | 11.06 | 0.54 | 11.8 | 88.0 | 0.1 | -5.85 | 0.77 | 0.86 | 3.69 | 3.5 | 0.003 | 0.77 | 0.0 | 0.04 | 14.76 | 0.01 | 2.124 | 12.06 | 0.63 | 6.9 | 93.0 | 0.1 | -1.82 | 1.61 | 0.76 | 0.87 | 2.57 | 67896 | 9006 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PXC | 13697 | 2023-02-27 | 2021-10-08 | 3.84 | 2.58 | — | 2.8 | 0.006 | 0.91 | 0.0 | 0.05 | 13.61 | 0.00 | 1.952 | 7.45 | 3.95 | 3.7 | 96.2 | 0.1 | -0.84 | 0.70 | 0.70 | 2.11 | 2.8 | 0.003 | 0.57 | 0.0 | 0.04 | 15.08 | 0.00 | 2.004 | 6.99 | 0.31 | 2.6 | 97.4 | 0.0 | 1.94 | 0.76 | 0.73 | 0.73 | 2.40 | 68808 | 9004 | 42 | 0 | 11 | 0 | 0 | logfile |
✔ | 6NYG | 0543 | 2023-02-27 | 2019-02-11 | 3.9 | 4.55 | — | 3.9 | 0.005 | 0.97 | 0.0 | 0.06 | 10.45 | 0.00 | 2.242 | 9.09 | 0.16 | 14.1 | 85.9 | 0.0 | -4.66 | 0.82 | 0.64 | 0.83 | 3.9 | 0.003 | 0.73 | 0.0 | 0.05 | 13.61 | 0.00 | 2.093 | 18.88 | 0.18 | 11.3 | 88.7 | 0.0 | -3.94 | 1.29 | 0.83 | 0.68 | 0.96 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYM | 0546 | 2023-02-27 | 2019-02-11 | 3.6 | 4.42 | — | 4.1 | 0.005 | 0.94 | 0.0 | 0.06 | 10.43 | 0.00 | 2.260 | 8.20 | 0.32 | 12.6 | 87.4 | 0.0 | -5.10 | 0.87 | 0.78 | 2.54 | 4.1 | 0.007 | 0.83 | 0.0 | 0.05 | 12.88 | 0.00 | 2.133 | 18.95 | 0.35 | 20.3 | 79.7 | 0.0 | -4.50 | 1.20 | 0.88 | 0.80 | 2.49 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYN | 0547 | 2023-02-27 | 2019-02-11 | 3.5 | 4.40 | — | 4.1 | 0.006 | 1.01 | 0.0 | 0.06 | 10.55 | 0.01 | 2.259 | 7.62 | 0.97 | 16.7 | 83.3 | 0.0 | -5.19 | 0.87 | 0.77 | 2.69 | 4.1 | 0.004 | 0.71 | 0.0 | 0.05 | 12.57 | 0.00 | 2.163 | 16.36 | 0.20 | 17.0 | 83.0 | 0.0 | -4.58 | 0.51 | 0.88 | 0.79 | 2.29 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYL | 0545 | 2023-02-27 | 2019-02-11 | 3.7 | 4.50 | — | 4.1 | 0.008 | 1.14 | 0.0 | 0.06 | 11.10 | 0.01 | 2.233 | 10.38 | 0.97 | 16.1 | 83.9 | 0.0 | -5.60 | 0.87 | 0.74 | 2.26 | 4.1 | 0.005 | 0.81 | 0.0 | 0.05 | 12.87 | 0.00 | 2.133 | 25.39 | 0.31 | 20.1 | 79.9 | 0.0 | -4.78 | 0.53 | 0.87 | 0.74 | 1.84 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYJ | 0544 | 2023-02-27 | 2019-02-11 | 3.2 | 3.93 | — | 3.8 | 0.008 | 1.06 | 0.0 | 0.06 | 10.60 | 0.01 | 2.247 | 7.25 | 0.54 | 15.2 | 84.8 | 0.0 | -5.28 | 0.82 | 0.77 | 3.30 | 3.8 | 0.007 | 0.80 | 0.0 | 0.05 | 12.81 | 0.00 | 2.204 | 15.43 | 0.38 | 18.1 | 81.9 | 0.0 | -4.31 | 0.58 | 0.83 | 0.79 | 3.08 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NVN | 12607 | 2023-02-27 | 2021-03-15 | 3.0 | 3.12 | 2.93 | 3.1 | 0.004 | 0.62 | 0.0 | 0.04 | 14.51 | 0.00 | 1.909 | 8.75 | 1.66 | 3.2 | 96.7 | 0.1 | -2.07 | 0.64 | 0.77 | 2.98 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 16.96 | 0.00 | 1.103 | 10.11 | 2.54 | 3.1 | 96.9 | 0.0 | 0.86 | 1.19 | 0.73 | 0.85 | 2.77 | 69139 | 8970 | 51 | 0 | 48 | 19 | 0 | logfile |
✔ | 8D6X | 27225 | 2023-02-27 | 2022-06-06 | 3.2 | 10.22 | — | — | 0.003 | 0.62 | 0.0 | 0.04 | 12.14 | 0.00 | 2.195 | 17.76 | 0.06 | 2.6 | 97.4 | 0.0 | 1.17 | 0.70 | 0.42 | 0.14 | — | 0.003 | 0.68 | 0.0 | 0.04 | 14.52 | 0.00 | 2.006 | 31.08 | 0.17 | 4.9 | 95.1 | 0.0 | 0.20 | 4.65 | 0.78 | 0.54 | 0.09 | 68362 | 8957 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 5N8N | 3600 | 2023-02-27 | 2017-02-23 | 3.28 | 3.38 | — | 3.4 | 0.019 | 1.34 | 0.0 | 0.12 | 11.08 | 0.01 | 1.755 | 21.54 | 0.81 | 4.4 | 95.6 | 0.0 | -2.91 | 0.40 | 0.82 | 2.76 | 3.4 | 0.003 | 0.65 | 0.0 | 0.04 | 15.66 | 0.00 | 2.088 | 10.65 | 0.34 | 6.0 | 93.4 | 0.6 | 0.02 | 1.47 | 0.42 | 0.85 | 2.38 | 70035 | 8895 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K57 | 22676 | 2023-02-27 | 2020-09-16 | 3.7 | 4.17 | 3.78 | 4.0 | 0.007 | 1.03 | 0.0 | 0.06 | 15.81 | 0.01 | 2.107 | 6.10 | 0.94 | 5.9 | 94.1 | 0.0 | -4.46 | 0.85 | 0.83 | 0.74 | 4.0 | 0.005 | 0.72 | 0.0 | 0.05 | 16.44 | 0.00 | 2.111 | 11.04 | 0.35 | 6.6 | 93.4 | 0.0 | -0.88 | 0.56 | 0.85 | 0.83 | 0.69 | 70104 | 8892 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TE9 | 10477 | 2023-02-25 | 2019-11-11 | 3.58 | 3.70 | — | 3.6 | 0.011 | 1.32 | 0.0 | 0.08 | 10.50 | 0.01 | 0.891 | 13.02 | 0.82 | 9.9 | 90.0 | 0.1 | -5.43 | 0.77 | 0.85 | 3.48 | 3.6 | 0.003 | 0.77 | 0.0 | 0.04 | 15.44 | 0.00 | 2.130 | 13.99 | 0.71 | 6.2 | 93.8 | 0.0 | -1.36 | 0.72 | 0.76 | 0.85 | 2.03 | 66906 | 8892 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WJZ | 32553 | 2023-02-27 | 2022-01-08 | 3.34 | 2.55 | — | 2.1 | 0.003 | 0.56 | 5.0 | 0.05 | 9.77 | 0.01 | 2.238 | 8.01 | 5.50 | 8.7 | 91.3 | 0.0 | -4.86 | 0.72 | 0.69 | 2.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69158 | 8886 | 24 | 0 | 49 | 0 | 0 | logfile |
✔ | 8CVi | 27008 | 2023-02-25 | 2022-05-18 | 3.4 | 3.54 | 3.20 | 3.4 | 0.003 | 0.49 | 0.0 | 0.03 | 13.53 | 0.00 | 2.073 | 8.79 | 0.05 | 4.0 | 95.9 | 0.1 | 1.49 | 0.55 | 0.83 | 1.22 | 3.4 | 0.003 | 0.58 | 1.0 | 0.04 | 16.27 | 0.00 | 2.023 | 10.85 | 0.42 | 4.0 | 96.0 | 0.0 | 3.71 | 2.21 | 0.58 | 0.84 | 0.83 | 66030 | 8856 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KFK | 9974 | 2023-02-24 | 2019-07-08 | 4.1 | 4.28 | — | 15.0 | 0.015 | 1.99 | 0.0 | 0.08 | 10.94 | 0.01 | 1.444 | 20.13 | 0.00 | 8.2 | 89.5 | 2.2 | -1.03 | 0.14 | 0.06 | — | 4.2 | 0.004 | 0.94 | 0.0 | 0.05 | 12.81 | 0.00 | 2.059 | 20.22 | 0.00 | 8.3 | 90.8 | 0.9 | -1.16 | 2.72 | 0.24 | 0.30 | — | 65076 | 8844 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CGB | 30354 | 2023-02-24 | 2020-07-01 | 3.4 | 4.20 | — | 3.8 | 0.004 | 0.79 | 21.0 | 0.05 | 13.10 | 0.00 | 2.035 | 15.78 | 1.60 | 5.2 | 94.6 | 0.1 | -1.64 | 0.59 | 0.80 | 1.16 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 14.91 | 0.00 | 2.092 | 17.99 | 0.38 | 6.3 | 93.7 | 0.0 | -1.21 | 0.54 | 0.60 | 0.81 | 1.07 | 64834 | 8822 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RLi | 24531 | 2023-02-27 | 2021-07-23 | 3.1 | 3.39 | — | 2.6 | 0.005 | 0.95 | 0.0 | 0.05 | 16.39 | 0.01 | 1.481 | 17.49 | 0.00 | 5.3 | 94.4 | 0.3 | -1.57 | 0.88 | 0.82 | 1.37 | 2.7 | 0.005 | 0.69 | 0.0 | 0.05 | 16.87 | 0.00 | 2.048 | 14.85 | 0.29 | 4.7 | 95.0 | 0.3 | -0.78 | 1.53 | 0.90 | 0.87 | 1.86 | 69768 | 8820 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 7UNF | 26623 | 2023-02-25 | 2022-04-10 | 4.08 | 3.35 | — | 3.5 | 0.007 | 0.98 | 0.0 | 0.05 | 15.69 | 0.01 | 2.011 | 4.34 | 0.27 | 4.8 | 95.2 | 0.0 | -5.90 | 0.66 | 0.82 | — | 3.5 | 0.005 | 0.71 | 0.0 | 0.05 | 14.92 | 0.00 | 2.086 | 7.46 | 0.01 | 5.2 | 94.8 | 0.0 | -1.08 | 1.03 | 0.66 | 0.83 | — | 66971 | 8805 | 40 | 0 | 26 | 0 | 0 | logfile |
✔ | 6MRC | 9195 | 2023-02-27 | 2018-10-12 | 3.08 | 3.40 | — | 3.4 | 0.007 | 0.81 | 0.0 | 0.07 | 10.51 | 0.00 | 1.988 | 27.58 | 0.18 | 7.5 | 92.3 | 0.2 | -2.93 | 0.81 | 0.83 | 3.65 | 3.3 | 0.004 | 0.64 | 0.0 | 0.07 | 13.87 | 0.00 | 1.830 | 33.35 | 0.30 | 6.9 | 93.0 | 0.1 | 0.01 | 0.64 | 0.81 | 0.86 | 3.39 | 69132 | 8792 | 56 | 0 | 28 | 98 | 2954 | logfile |
✔ | 6S44 | 10097 | 2023-02-25 | 2019-06-26 | 3.19 | 3.30 | 3.41 | 3.2 | 0.010 | 0.92 | 0.0 | 0.06 | 16.63 | 0.01 | 2.324 | 10.10 | 11.02 | 9.7 | 90.3 | 0.0 | -3.81 | 0.71 | 0.82 | 3.28 | 3.2 | 0.007 | 0.76 | 0.0 | 0.05 | 16.97 | 0.01 | 2.148 | 22.58 | 1.13 | 12.4 | 87.6 | 0.0 | -2.84 | 0.69 | 0.73 | 0.85 | 3.37 | 67200 | 8760 | 60 | 0 | 0 | 0 | 0 | logfile |