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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5GJR | 9512 | 2023-08-26 | 2016-07-01 | 3.5 | 3.65 | — | 3.5 | 0.013 | 1.53 | 38.0 | 0.08 | 16.77 | 0.01 | 1.114 | 63.72 | 11.56 | 13.2 | 81.8 | 5.0 | -4.66 | 0.71 | 0.77 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142753 | 19945 | 76 | 0 | 12 | 0 | 0 | logfile |
✔ | 8Bi4 | 16076 | 2023-08-28 | 2022-11-01 | 4.3 | 4.52 | 4.39 | 4.5 | 0.004 | 0.97 | 0.0 | 0.05 | 11.50 | 0.01 | 0.452 | 10.80 | 0.14 | 4.0 | 95.6 | 0.3 | -0.49 | 0.64 | 0.81 | — | 4.5 | 0.006 | 0.86 | 0.0 | 0.05 | 13.52 | 0.01 | 2.057 | 10.58 | 0.04 | 5.4 | 94.6 | 0.0 | -0.63 | 1.65 | 0.65 | 0.84 | — | 145200 | 19404 | 132 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RoD | 24592 | 2023-08-22 | 2021-07-30 | 3.8 | 4.39 | — | 3.9 | 0.004 | 0.70 | 0.0 | 0.05 | 11.72 | 0.01 | 2.388 | 12.51 | 0.00 | 4.3 | 95.7 | 0.0 | 2.79 | 0.69 | 0.87 | 2.22 | 3.9 | 0.004 | 0.82 | 0.0 | 0.05 | 14.24 | 0.01 | 2.125 | 10.38 | 0.27 | 6.8 | 93.2 | 0.0 | 3.08 | 0.50 | 0.69 | 0.86 | 1.59 | 139258 | 19082 | 203 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZQA | 11357 | 2023-08-17 | 2020-07-09 | 4.4 | 4.48 | — | 4.4 | 0.006 | 1.11 | 1.0 | 0.06 | 14.62 | 0.01 | 1.928 | 5.28 | 0.00 | 9.3 | 90.4 | 0.3 | -3.27 | 0.77 | 0.74 | — | 4.4 | 0.011 | 1.41 | 0.0 | 0.06 | 16.91 | 0.01 | 1.638 | 24.83 | 0.00 | 20.3 | 79.5 | 0.2 | -3.96 | 1.34 | 0.76 | 0.75 | — | 125991 | 19047 | 63 | 1485 | 5 | 0 | 0 | logfile |
✔ | 7FiK | 31600 | 2023-08-12 | 2021-07-31 | 3.7 | 3.41 | — | 2.2 | 0.007 | 0.98 | 1.0 | 0.05 | 9.93 | 0.00 | 1.868 | 3.44 | 3.73 | 6.0 | 93.8 | 0.2 | -2.13 | 0.50 | 0.52 | 1.35 | 2.2 | 0.002 | 0.60 | 0.0 | 0.04 | 11.18 | 0.00 | 2.017 | 5.54 | 0.21 | 3.9 | 96.1 | 0.0 | 1.53 | 0.65 | 0.60 | 0.69 | 1.62 | 116163 | 19039 | 32 | 0 | 722 | 0 | 0 | logfile |
✔ | 7Ro3 | 24586 | 2023-08-21 | 2021-07-30 | 4.8 | 4.78 | — | 4.4 | 0.004 | 0.65 | 0.0 | 0.05 | 12.47 | 0.01 | 2.358 | 11.99 | 1.33 | 4.3 | 95.7 | 0.0 | 1.70 | 0.67 | 0.84 | — | 4.4 | 0.005 | 1.03 | 0.0 | 0.05 | 11.66 | 0.01 | 2.227 | 24.92 | 0.00 | 6.5 | 93.5 | 0.0 | 0.29 | 2.18 | 0.68 | 0.84 | — | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Ro6 | 24589 | 2023-08-21 | 2021-07-30 | 4.1 | 4.30 | — | 3.8 | 0.006 | 0.69 | 0.0 | 0.04 | 12.71 | 0.01 | 2.220 | 13.37 | 1.33 | 5.4 | 94.6 | 0.0 | 1.57 | 0.68 | 0.86 | — | 3.8 | 0.003 | 0.72 | 0.0 | 0.05 | 12.01 | 0.01 | 2.189 | 10.14 | 0.00 | 4.5 | 95.5 | 0.0 | 3.10 | 0.56 | 0.68 | 0.85 | — | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RoE | 24593 | 2023-08-20 | 2021-07-30 | 3.7 | 3.80 | — | 3.5 | 0.006 | 0.69 | 0.0 | 0.04 | 12.63 | 0.01 | 2.266 | 11.99 | 4.00 | 6.7 | 93.3 | 0.0 | 1.70 | 0.67 | 0.86 | 1.96 | 3.5 | 0.004 | 0.73 | 0.0 | 0.04 | 14.52 | 0.01 | 2.191 | 10.10 | 0.58 | 5.7 | 94.2 | 0.1 | 3.40 | 0.52 | 0.67 | 0.85 | 1.77 | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Ro5 | 24588 | 2023-08-21 | 2021-07-30 | 4.1 | 4.27 | — | 3.9 | 0.005 | 0.85 | 0.0 | 0.05 | 13.48 | 0.01 | 2.235 | 12.45 | 4.00 | 4.3 | 95.7 | 0.0 | 1.05 | 0.68 | 0.85 | — | 3.9 | 0.004 | 0.76 | 0.0 | 0.05 | 11.70 | 0.01 | 2.184 | 12.71 | 0.00 | 5.8 | 94.2 | 0.0 | 2.75 | 0.56 | 0.68 | 0.85 | — | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RoB | 24590 | 2023-08-21 | 2021-07-30 | 3.9 | 4.43 | — | 4.1 | 0.004 | 0.71 | 0.0 | 0.04 | 13.08 | 0.01 | 2.151 | 11.28 | 4.00 | 4.3 | 95.7 | 0.0 | 1.28 | 0.68 | 0.85 | 2.11 | 4.1 | 0.004 | 0.94 | 1.0 | 0.05 | 14.23 | 0.01 | 2.079 | 12.67 | 0.64 | 5.3 | 94.7 | 0.0 | 2.47 | 1.23 | 0.68 | 0.85 | 1.54 | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RoC | 24591 | 2023-08-21 | 2021-07-30 | 3.7 | 3.89 | — | 3.7 | 0.003 | 0.68 | 0.0 | 0.05 | 11.37 | 0.01 | 2.563 | 18.31 | 0.00 | 5.4 | 94.6 | 0.0 | 3.01 | 0.69 | 0.84 | 1.59 | 3.7 | 0.003 | 0.76 | 0.0 | 0.04 | 14.35 | 0.01 | 2.157 | 9.23 | 0.53 | 5.0 | 95.0 | 0.0 | 3.21 | 1.21 | 0.69 | 0.85 | 1.39 | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Ro4 | 24587 | 2023-08-20 | 2021-07-30 | 4.3 | 4.51 | — | 4.2 | 0.006 | 0.78 | 0.0 | 0.05 | 13.23 | 0.01 | 2.237 | 17.04 | 4.00 | 5.4 | 94.6 | 0.0 | 0.68 | 0.68 | 0.85 | — | 4.2 | 0.004 | 0.79 | 0.0 | 0.05 | 11.12 | 0.01 | 2.104 | 13.80 | 0.01 | 6.1 | 93.9 | 0.0 | 1.92 | 0.60 | 0.68 | 0.85 | — | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RoH | 24595 | 2023-08-21 | 2021-07-30 | 4.0 | 4.01 | — | 3.8 | 0.005 | 0.67 | 0.0 | 0.04 | 12.43 | 0.01 | 2.350 | 11.51 | 2.67 | 5.4 | 94.6 | 0.0 | 0.83 | 0.67 | 0.85 | — | 3.8 | 0.004 | 0.75 | 0.0 | 0.04 | 14.46 | 0.01 | 2.199 | 10.84 | 0.38 | 5.5 | 94.5 | 0.0 | 3.00 | 1.24 | 0.67 | 0.84 | — | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RoG | 24594 | 2023-08-20 | 2021-07-30 | 3.8 | 4.00 | — | 3.7 | 0.007 | 0.74 | 0.0 | 0.05 | 12.33 | 0.01 | 2.355 | 14.52 | 1.33 | 5.4 | 94.6 | 0.0 | 1.76 | 0.67 | 0.85 | 1.80 | 3.8 | 0.004 | 0.77 | 0.0 | 0.04 | 14.26 | 0.01 | 2.175 | 11.90 | 0.23 | 4.4 | 95.6 | 0.0 | 3.10 | 1.65 | 0.66 | 0.84 | 2.05 | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Roi | 24597 | 2023-08-21 | 2021-07-30 | 4.3 | 4.43 | — | 4.1 | 0.004 | 0.66 | 0.0 | 0.05 | 12.41 | 0.01 | 2.400 | 9.73 | 1.33 | 4.3 | 95.7 | 0.0 | 1.63 | 0.67 | 0.85 | — | 4.1 | 0.004 | 0.77 | 0.0 | 0.05 | 11.38 | 0.01 | 2.186 | 11.55 | 0.00 | 4.3 | 95.7 | 0.0 | 2.65 | 0.64 | 0.67 | 0.85 | — | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WKK | 32566 | 2023-08-22 | 2022-01-10 | 4.2 | 4.30 | — | 3.9 | 0.006 | 0.63 | 0.0 | 0.04 | 4.94 | 0.00 | 2.138 | 2.83 | 0.00 | 4.7 | 95.2 | 0.1 | -2.36 | 0.46 | 0.60 | — | 3.8 | 0.005 | 0.74 | 0.0 | 0.04 | 5.51 | 0.00 | 2.124 | 3.84 | 0.00 | 9.6 | 90.4 | 0.0 | -0.97 | 0.64 | 0.52 | 0.69 | — | 92821 | 18728 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YEV | 33778 | 2023-08-30 | 2022-07-06 | 3.6 | 3.85 | 3.59 | 3.8 | 0.006 | 1.01 | 3.0 | 0.07 | 9.92 | 0.01 | 1.289 | 5.98 | 0.18 | 6.9 | 93.0 | 0.1 | -3.55 | 0.52 | 0.85 | 2.42 | 3.8 | 0.003 | 0.69 | 1.0 | 0.04 | 14.22 | 0.00 | 2.076 | 10.38 | 0.44 | 5.2 | 94.8 | 0.0 | -0.33 | 0.65 | 0.53 | 0.86 | 1.88 | 146393 | 18559 | 35 | 0 | 18 | 0 | 0 | logfile |
✔ | 7YEZ | 33779 | 2023-08-29 | 2022-07-06 | 3.4 | 4.04 | 3.50 | 3.9 | 0.008 | 1.09 | 6.0 | 0.07 | 10.70 | 0.01 | 1.398 | 7.56 | 0.30 | 8.8 | 91.1 | 0.1 | -3.92 | 0.45 | 0.78 | 1.22 | 3.9 | 0.003 | 0.78 | 0.0 | 0.04 | 15.40 | 0.00 | 2.041 | 13.18 | 0.39 | 6.2 | 93.8 | 0.0 | -0.87 | 2.15 | 0.49 | 0.86 | 1.48 | 146052 | 18531 | 28 | 0 | 6 | 0 | 0 | logfile |
✔ | 6AB5 | 6999 | 2023-08-24 | 2018-07-20 | 3.7 | 3.79 | — | 3.7 | 0.007 | 0.96 | 6.0 | 0.06 | 11.27 | 0.01 | 1.686 | 24.89 | 0.75 | 5.6 | 94.4 | 0.0 | -3.80 | 0.85 | 0.86 | 3.48 | 3.7 | 0.007 | 0.66 | 0.0 | 0.05 | 14.07 | 0.00 | 2.100 | 12.10 | 0.29 | 7.2 | 92.8 | 0.0 | -2.04 | 0.62 | 0.87 | 0.87 | 2.34 | 139740 | 18180 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o3W | 12710 | 2023-08-22 | 2021-04-03 | 4.9 | 6.81 | 5.80 | 7.1 | 0.017 | 1.84 | 0.0 | 0.11 | 18.08 | 0.01 | 0.360 | 24.19 | 0.30 | 3.5 | 96.4 | 0.2 | 1.74 | 0.66 | 0.54 | — | 7.1 | 0.004 | 0.92 | 0.0 | 0.04 | 15.52 | 0.00 | 1.988 | 27.22 | 0.01 | 1.6 | 98.3 | 0.1 | 1.59 | 2.07 | 0.75 | 0.81 | — | 138390 | 17976 | 98 | 0 | 14 | 0 | 0 | logfile |