Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ToA	10542	2023-02-26	2019-12-11	3.47	3.57	—	3.5	0.009	1.24	0.0	0.07	10.85	0.01	2.110	11.06	0.54	11.8	88.0	0.1	-5.85	0.77	0.86	3.69	3.5	0.003	0.77	0.0	0.04	14.76	0.01	2.124	12.06	0.63	6.9	93.0	0.1	-1.82	1.61	0.76	0.87	2.57	67896	9006	42	0	0	0	0	logfile
✔	7PXC	13697	2023-02-27	2021-10-08	3.84	2.58	—	2.8	0.006	0.91	0.0	0.05	13.61	0.00	1.952	7.45	3.95	3.7	96.2	0.1	-0.84	0.70	0.70	2.11	2.8	0.003	0.57	0.0	0.04	15.08	0.00	2.004	6.99	0.31	2.6	97.4	0.0	1.94	0.76	0.73	0.73	2.40	68808	9004	42	0	11	0	0	logfile
✔	6NYG	0543	2023-02-27	2019-02-11	3.9	4.55	—	3.9	0.005	0.97	0.0	0.06	10.45	0.00	2.242	9.09	0.16	14.1	85.9	0.0	-4.66	0.82	0.64	0.83	3.9	0.003	0.73	0.0	0.05	13.61	0.00	2.093	18.88	0.18	11.3	88.7	0.0	-3.94	1.29	0.83	0.68	0.96	68664	9000	12	0	0	0	0	logfile
✔	6NYM	0546	2023-02-27	2019-02-11	3.6	4.42	—	4.1	0.005	0.94	0.0	0.06	10.43	0.00	2.260	8.20	0.32	12.6	87.4	0.0	-5.10	0.87	0.78	2.54	4.1	0.007	0.83	0.0	0.05	12.88	0.00	2.133	18.95	0.35	20.3	79.7	0.0	-4.50	1.20	0.88	0.80	2.49	68664	9000	12	0	0	0	0	logfile
✔	6NYN	0547	2023-02-27	2019-02-11	3.5	4.40	—	4.1	0.006	1.01	0.0	0.06	10.55	0.01	2.259	7.62	0.97	16.7	83.3	0.0	-5.19	0.87	0.77	2.69	4.1	0.004	0.71	0.0	0.05	12.57	0.00	2.163	16.36	0.20	17.0	83.0	0.0	-4.58	0.51	0.88	0.79	2.29	68664	9000	12	0	0	0	0	logfile
✔	6NYL	0545	2023-02-27	2019-02-11	3.7	4.50	—	4.1	0.008	1.14	0.0	0.06	11.10	0.01	2.233	10.38	0.97	16.1	83.9	0.0	-5.60	0.87	0.74	2.26	4.1	0.005	0.81	0.0	0.05	12.87	0.00	2.133	25.39	0.31	20.1	79.9	0.0	-4.78	0.53	0.87	0.74	1.84	68664	9000	12	0	0	0	0	logfile
✔	6NYJ	0544	2023-02-27	2019-02-11	3.2	3.93	—	3.8	0.008	1.06	0.0	0.06	10.60	0.01	2.247	7.25	0.54	15.2	84.8	0.0	-5.28	0.82	0.77	3.30	3.8	0.007	0.80	0.0	0.05	12.81	0.00	2.204	15.43	0.38	18.1	81.9	0.0	-4.31	0.58	0.83	0.79	3.08	68664	9000	12	0	0	0	0	logfile
✔	7NVN	12607	2023-02-27	2021-03-15	3.0	3.12	2.93	3.1	0.004	0.62	0.0	0.04	14.51	0.00	1.909	8.75	1.66	3.2	96.7	0.1	-2.07	0.64	0.77	2.98	3.1	0.003	0.63	0.0	0.04	16.96	0.00	1.103	10.11	2.54	3.1	96.9	0.0	0.86	1.19	0.73	0.85	2.77	69139	8970	51	0	48	19	0	logfile
✔	8D6X	27225	2023-02-27	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.76	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.003	0.68	0.0	0.04	14.52	0.00	2.006	31.08	0.17	4.9	95.1	0.0	0.20	4.65	0.78	0.54	0.09	68362	8957	41	0	0	0	0	logfile
✔	5N8N	3600	2023-02-27	2017-02-23	3.28	3.38	—	3.4	0.019	1.34	0.0	0.12	11.08	0.01	1.755	21.54	0.81	4.4	95.6	0.0	-2.91	0.40	0.82	2.76	3.4	0.003	0.65	0.0	0.04	15.66	0.00	2.088	10.65	0.34	6.0	93.4	0.6	0.02	1.47	0.42	0.85	2.38	70035	8895	30	0	0	0	0	logfile
✔	7K57	22676	2023-02-27	2020-09-16	3.7	4.17	3.78	4.0	0.007	1.03	0.0	0.06	15.81	0.01	2.107	6.10	0.94	5.9	94.1	0.0	-4.46	0.85	0.83	0.74	4.0	0.005	0.72	0.0	0.05	16.44	0.00	2.111	11.04	0.35	6.6	93.4	0.0	-0.88	0.56	0.85	0.83	0.69	70104	8892	12	0	0	0	0	logfile
✔	6TE9	10477	2023-02-25	2019-11-11	3.58	3.70	—	3.6	0.011	1.32	0.0	0.08	10.50	0.01	0.891	13.02	0.82	9.9	90.0	0.1	-5.43	0.77	0.85	3.48	3.6	0.003	0.77	0.0	0.04	15.44	0.00	2.130	13.99	0.71	6.2	93.8	0.0	-1.36	0.72	0.76	0.85	2.03	66906	8892	42	0	0	0	0	logfile
✘	7WJZ	32553	2023-02-27	2022-01-08	3.34	2.55	—	2.1	0.003	0.56	5.0	0.05	9.77	0.01	2.238	8.01	5.50	8.7	91.3	0.0	-4.86	0.72	0.69	2.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69158	8886	24	0	49	0	0	logfile
✔	8CVi	27008	2023-02-25	2022-05-18	3.4	3.54	3.20	3.4	0.003	0.49	0.0	0.03	13.53	0.00	2.073	8.79	0.05	4.0	95.9	0.1	1.49	0.55	0.83	1.22	3.4	0.003	0.58	1.0	0.04	16.27	0.00	2.023	10.85	0.42	4.0	96.0	0.0	3.71	2.21	0.58	0.84	0.83	66030	8856	33	0	0	0	0	logfile
✔	6KFK	9974	2023-02-24	2019-07-08	4.1	4.28	—	15.0	0.015	1.99	0.0	0.08	10.94	0.01	1.444	20.13	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	4.2	0.004	0.94	0.0	0.05	12.81	0.00	2.059	20.22	0.00	8.3	90.8	0.9	-1.16	2.72	0.24	0.30	—	65076	8844	22	0	0	0	0	logfile
✔	7CGB	30354	2023-02-24	2020-07-01	3.4	4.20	—	3.8	0.004	0.79	21.0	0.05	13.10	0.00	2.035	15.78	1.60	5.2	94.6	0.1	-1.64	0.59	0.80	1.16	3.8	0.004	0.70	0.0	0.04	14.91	0.00	2.092	17.99	0.38	6.3	93.7	0.0	-1.21	0.54	0.60	0.81	1.07	64834	8822	22	0	0	0	0	logfile
✔	7RLi	24531	2023-02-27	2021-07-23	3.1	3.39	—	2.6	0.005	0.95	0.0	0.05	16.39	0.01	1.481	17.49	0.00	5.3	94.4	0.3	-1.57	0.88	0.82	1.37	2.7	0.005	0.69	0.0	0.05	16.87	0.00	2.048	14.85	0.29	4.7	95.0	0.3	-0.78	1.53	0.90	0.87	1.86	69768	8820	24	0	24	0	0	logfile
✔	7UNF	26623	2023-02-25	2022-04-10	4.08	3.35	—	3.5	0.007	0.98	0.0	0.05	15.69	0.01	2.011	4.34	0.27	4.8	95.2	0.0	-5.90	0.66	0.82	—	3.5	0.005	0.71	0.0	0.05	14.92	0.00	2.086	7.46	0.01	5.2	94.8	0.0	-1.08	1.03	0.66	0.83	—	66971	8805	40	0	26	0	0	logfile
✔	6MRC	9195	2023-02-27	2018-10-12	3.08	3.40	—	3.4	0.007	0.81	0.0	0.07	10.51	0.00	1.988	27.58	0.18	7.5	92.3	0.2	-2.93	0.81	0.83	3.65	3.3	0.004	0.64	0.0	0.07	13.87	0.00	1.830	33.35	0.30	6.9	93.0	0.1	0.01	0.64	0.81	0.86	3.39	69132	8792	56	0	28	98	2954	logfile
✔	6S44	10097	2023-02-25	2019-06-26	3.19	3.30	3.41	3.2	0.010	0.92	0.0	0.06	16.63	0.01	2.324	10.10	11.02	9.7	90.3	0.0	-3.81	0.71	0.82	3.28	3.2	0.007	0.76	0.0	0.05	16.97	0.01	2.148	22.58	1.13	12.4	87.6	0.0	-2.84	0.69	0.73	0.85	3.37	67200	8760	60	0	0	0	0	logfile

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