Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5GJR	9512	2023-08-26	2016-07-01	3.5	3.65	—	3.5	0.013	1.53	38.0	0.08	16.77	0.01	1.114	63.72	11.56	13.2	81.8	5.0	-4.66	0.71	0.77	1.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	142753	19945	76	0	12	0	0	logfile
✔	8Bi4	16076	2023-08-28	2022-11-01	4.3	4.52	4.39	4.5	0.004	0.97	0.0	0.05	11.50	0.01	0.452	10.80	0.14	4.0	95.6	0.3	-0.49	0.64	0.81	—	4.5	0.006	0.86	0.0	0.05	13.52	0.01	2.057	10.58	0.04	5.4	94.6	0.0	-0.63	1.65	0.65	0.84	—	145200	19404	132	0	0	0	0	logfile
✔	7RoD	24592	2023-08-22	2021-07-30	3.8	4.39	—	3.9	0.004	0.70	0.0	0.05	11.72	0.01	2.388	12.51	0.00	4.3	95.7	0.0	2.79	0.69	0.87	2.22	3.9	0.004	0.82	0.0	0.05	14.24	0.01	2.125	10.38	0.27	6.8	93.2	0.0	3.08	0.50	0.69	0.86	1.59	139258	19082	203	0	0	0	0	logfile
✔	6ZQA	11357	2023-08-17	2020-07-09	4.4	4.48	—	4.4	0.006	1.11	1.0	0.06	14.62	0.01	1.928	5.28	0.00	9.3	90.4	0.3	-3.27	0.77	0.74	—	4.4	0.011	1.41	0.0	0.06	16.91	0.01	1.638	24.83	0.00	20.3	79.5	0.2	-3.96	1.34	0.76	0.75	—	125991	19047	63	1485	5	0	0	logfile
✔	7FiK	31600	2023-08-12	2021-07-31	3.7	3.41	—	2.2	0.007	0.98	1.0	0.05	9.93	0.00	1.868	3.44	3.73	6.0	93.8	0.2	-2.13	0.50	0.52	1.35	2.2	0.002	0.60	0.0	0.04	11.18	0.00	2.017	5.54	0.21	3.9	96.1	0.0	1.53	0.65	0.60	0.69	1.62	116163	19039	32	0	722	0	0	logfile
✔	7Ro3	24586	2023-08-21	2021-07-30	4.8	4.78	—	4.4	0.004	0.65	0.0	0.05	12.47	0.01	2.358	11.99	1.33	4.3	95.7	0.0	1.70	0.67	0.84	—	4.4	0.005	1.03	0.0	0.05	11.66	0.01	2.227	24.92	0.00	6.5	93.5	0.0	0.29	2.18	0.68	0.84	—	137200	18800	200	0	0	0	0	logfile
✔	7Ro6	24589	2023-08-21	2021-07-30	4.1	4.30	—	3.8	0.006	0.69	0.0	0.04	12.71	0.01	2.220	13.37	1.33	5.4	94.6	0.0	1.57	0.68	0.86	—	3.8	0.003	0.72	0.0	0.05	12.01	0.01	2.189	10.14	0.00	4.5	95.5	0.0	3.10	0.56	0.68	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7RoE	24593	2023-08-20	2021-07-30	3.7	3.80	—	3.5	0.006	0.69	0.0	0.04	12.63	0.01	2.266	11.99	4.00	6.7	93.3	0.0	1.70	0.67	0.86	1.96	3.5	0.004	0.73	0.0	0.04	14.52	0.01	2.191	10.10	0.58	5.7	94.2	0.1	3.40	0.52	0.67	0.85	1.77	137200	18800	200	0	0	0	0	logfile
✔	7Ro5	24588	2023-08-21	2021-07-30	4.1	4.27	—	3.9	0.005	0.85	0.0	0.05	13.48	0.01	2.235	12.45	4.00	4.3	95.7	0.0	1.05	0.68	0.85	—	3.9	0.004	0.76	0.0	0.05	11.70	0.01	2.184	12.71	0.00	5.8	94.2	0.0	2.75	0.56	0.68	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7RoB	24590	2023-08-21	2021-07-30	3.9	4.43	—	4.1	0.004	0.71	0.0	0.04	13.08	0.01	2.151	11.28	4.00	4.3	95.7	0.0	1.28	0.68	0.85	2.11	4.1	0.004	0.94	1.0	0.05	14.23	0.01	2.079	12.67	0.64	5.3	94.7	0.0	2.47	1.23	0.68	0.85	1.54	137200	18800	200	0	0	0	0	logfile
✔	7RoC	24591	2023-08-21	2021-07-30	3.7	3.89	—	3.7	0.003	0.68	0.0	0.05	11.37	0.01	2.563	18.31	0.00	5.4	94.6	0.0	3.01	0.69	0.84	1.59	3.7	0.003	0.76	0.0	0.04	14.35	0.01	2.157	9.23	0.53	5.0	95.0	0.0	3.21	1.21	0.69	0.85	1.39	137200	18800	200	0	0	0	0	logfile
✔	7Ro4	24587	2023-08-20	2021-07-30	4.3	4.51	—	4.2	0.006	0.78	0.0	0.05	13.23	0.01	2.237	17.04	4.00	5.4	94.6	0.0	0.68	0.68	0.85	—	4.2	0.004	0.79	0.0	0.05	11.12	0.01	2.104	13.80	0.01	6.1	93.9	0.0	1.92	0.60	0.68	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7RoH	24595	2023-08-21	2021-07-30	4.0	4.01	—	3.8	0.005	0.67	0.0	0.04	12.43	0.01	2.350	11.51	2.67	5.4	94.6	0.0	0.83	0.67	0.85	—	3.8	0.004	0.75	0.0	0.04	14.46	0.01	2.199	10.84	0.38	5.5	94.5	0.0	3.00	1.24	0.67	0.84	—	137200	18800	200	0	0	0	0	logfile
✔	7RoG	24594	2023-08-20	2021-07-30	3.8	4.00	—	3.7	0.007	0.74	0.0	0.05	12.33	0.01	2.355	14.52	1.33	5.4	94.6	0.0	1.76	0.67	0.85	1.80	3.8	0.004	0.77	0.0	0.04	14.26	0.01	2.175	11.90	0.23	4.4	95.6	0.0	3.10	1.65	0.66	0.84	2.05	137200	18800	200	0	0	0	0	logfile
✔	7Roi	24597	2023-08-21	2021-07-30	4.3	4.43	—	4.1	0.004	0.66	0.0	0.05	12.41	0.01	2.400	9.73	1.33	4.3	95.7	0.0	1.63	0.67	0.85	—	4.1	0.004	0.77	0.0	0.05	11.38	0.01	2.186	11.55	0.00	4.3	95.7	0.0	2.65	0.64	0.67	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7WKK	32566	2023-08-22	2022-01-10	4.2	4.30	—	3.9	0.006	0.63	0.0	0.04	4.94	0.00	2.138	2.83	0.00	4.7	95.2	0.1	-2.36	0.46	0.60	—	3.8	0.005	0.74	0.0	0.04	5.51	0.00	2.124	3.84	0.00	9.6	90.4	0.0	-0.97	0.64	0.52	0.69	—	92821	18728	30	0	0	0	0	logfile
✔	7YEV	33778	2023-08-30	2022-07-06	3.6	3.85	3.59	3.8	0.006	1.01	3.0	0.07	9.92	0.01	1.289	5.98	0.18	6.9	93.0	0.1	-3.55	0.52	0.85	2.42	3.8	0.003	0.69	1.0	0.04	14.22	0.00	2.076	10.38	0.44	5.2	94.8	0.0	-0.33	0.65	0.53	0.86	1.88	146393	18559	35	0	18	0	0	logfile
✔	7YEZ	33779	2023-08-29	2022-07-06	3.4	4.04	3.50	3.9	0.008	1.09	6.0	0.07	10.70	0.01	1.398	7.56	0.30	8.8	91.1	0.1	-3.92	0.45	0.78	1.22	3.9	0.003	0.78	0.0	0.04	15.40	0.00	2.041	13.18	0.39	6.2	93.8	0.0	-0.87	2.15	0.49	0.86	1.48	146052	18531	28	0	6	0	0	logfile
✔	6AB5	6999	2023-08-24	2018-07-20	3.7	3.79	—	3.7	0.007	0.96	6.0	0.06	11.27	0.01	1.686	24.89	0.75	5.6	94.4	0.0	-3.80	0.85	0.86	3.48	3.7	0.007	0.66	0.0	0.05	14.07	0.00	2.100	12.10	0.29	7.2	92.8	0.0	-2.04	0.62	0.87	0.87	2.34	139740	18180	60	0	0	0	0	logfile
✔	7o3W	12710	2023-08-22	2021-04-03	4.9	6.81	5.80	7.1	0.017	1.84	0.0	0.11	18.08	0.01	0.360	24.19	0.30	3.5	96.4	0.2	1.74	0.66	0.54	—	7.1	0.004	0.92	0.0	0.04	15.52	0.00	1.988	27.22	0.01	1.6	98.3	0.1	1.59	2.07	0.75	0.81	—	138390	17976	98	0	14	0	0	logfile

• ← previous
• Page 2 of 542
• next →