Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Z5L	11079	2022-07-11	2020-05-26	3.8	4.08	—	3.9	0.004	0.63	0.0	0.03	15.41	0.00	1.986	3.72	0.00	5.2	94.8	0.0	1.60	0.53	0.68	0.31	3.9	0.003	0.73	0.0	0.04	17.26	0.00	2.171	14.13	0.12	4.0	96.0	0.0	2.44	1.28	0.58	0.85	0.94	154880	20080	80	0	0	0	0	logfile
✔	6WH3	21667	2022-07-12	2020-04-07	2.96	3.01	—	3.0	0.011	1.09	60.0	0.08	9.53	0.01	2.204	31.73	0.68	3.9	96.1	0.0	-1.75	0.74	0.87	5.56	3.0	0.004	0.64	0.0	0.05	16.07	0.00	2.097	15.42	3.49	5.4	94.6	0.0	-1.05	0.61	0.71	0.88	4.59	157740	20040	120	0	60	0	0	logfile
✔	5GJR	9512	2022-07-07	2016-07-01	3.5	3.65	—	3.5	0.013	1.53	38.0	0.08	16.77	0.01	1.114	63.78	11.56	13.2	81.8	5.0	-4.66	0.71	0.77	1.82	3.6	0.004	0.83	1.0	0.04	16.58	0.00	2.040	14.76	0.95	6.4	93.0	0.6	0.11	1.03	0.73	0.80	1.62	142753	19945	76	0	12	0	0	logfile
✔	6SSK	10296	2022-07-11	2019-09-08	3.18	3.64	—	3.6	0.008	0.88	10.0	0.06	14.40	0.01	1.561	4.60	0.18	3.5	96.2	0.3	-4.85	0.57	0.57	0.07	3.6	0.004	0.72	0.0	0.04	16.93	0.01	2.101	9.14	0.39	2.8	97.2	0.0	-0.23	1.36	0.73	0.86	1.58	155900	19870	90	0	0	0	0	logfile
✔	6QN1	4595	2022-07-07	2019-02-08	3.28	3.37	3.25	3.3	0.007	0.66	0.0	0.04	14.37	0.00	1.898	4.69	0.41	4.9	95.1	0.0	-2.95	0.81	0.85	2.33	3.3	0.003	0.59	0.0	0.04	17.84	0.00	2.083	5.56	0.49	1.8	98.2	0.0	0.22	0.78	0.82	0.87	1.99	141480	19740	240	0	0	0	0	logfile
✔	6U2L	20623	2022-07-11	2019-08-20	2.83	2.89	2.94	2.9	0.009	1.02	0.0	0.06	9.92	0.01	2.351	3.26	0.19	7.1	92.9	0.0	-3.75	0.78	0.84	3.92	2.9	0.003	0.70	0.0	0.04	15.72	0.01	2.100	7.01	2.61	5.9	94.1	0.0	-0.51	0.70	0.80	0.86	3.03	153756	19616	64	0	96	0	0	logfile
✔	6UZC	20956	2022-07-10	2019-11-14	4.5	5.36	—	5.2	0.018	1.84	8.0	0.10	10.97	0.01	1.850	7.09	0.26	5.0	94.4	0.6	-0.66	0.48	0.67	—	5.2	0.005	0.87	1.0	0.05	13.46	0.01	2.021	25.39	0.04	8.8	91.1	0.1	-1.51	1.83	0.51	0.72	—	150312	19473	42	0	0	0	0	logfile
✔	6LB0	0866	2022-07-09	2019-11-13	3.6	3.79	—	3.7	0.006	0.86	0.0	0.05	13.62	0.01	0.919	7.46	0.00	6.5	93.5	0.0	-3.90	0.74	0.89	4.20	3.7	0.003	0.60	0.0	0.04	14.23	0.00	2.180	7.82	0.18	6.4	93.6	0.0	-1.90	0.52	0.74	0.89	3.78	148140	19440	60	0	0	0	0	logfile
✔	7o3X	12711	2022-07-08	2021-04-03	3.9	4.85	4.22	6.5	0.017	1.96	0.0	0.11	18.05	0.01	0.321	15.91	1.39	1.6	97.8	0.6	2.94	0.58	0.46	-0.41	6.7	0.005	1.18	0.0	0.05	19.84	0.01	1.938	33.55	1.00	1.9	98.0	0.1	1.55	2.43	0.76	0.84	0.06	148395	19290	105	0	15	0	0	logfile
✘	7RoD	24592	2022-07-07	2021-07-30	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139944	19176	204	0	0	0	0	logfile
✔	6ZQA	11357	2022-07-05	2020-07-09	4.4	4.48	—	4.4	0.006	1.11	1.0	0.06	14.62	0.01	1.928	5.28	0.00	9.3	90.4	0.3	-3.27	0.77	0.74	—	4.4	0.008	1.21	0.0	0.06	16.57	0.01	1.705	19.08	0.00	18.9	81.0	0.1	-3.57	1.32	0.76	0.74	—	125991	19047	63	1485	5	0	0	logfile
✔	6J0N	9765	2022-07-10	2018-12-25	3.5	3.55	—	3.5	0.007	1.09	0.0	0.06	16.27	0.01	2.196	6.21	2.74	6.5	93.3	0.1	-4.63	0.69	0.80	2.09	3.5	0.006	0.78	2.0	0.04	17.17	0.01	1.812	12.31	0.41	5.9	94.1	0.0	-1.54	0.72	0.68	0.82	1.74	149886	19044	54	0	0	0	0	logfile
✔	7WPR	32689	2022-07-08	2022-01-24	4.39	5.44	—	4.2	0.007	0.95	0.0	0.05	10.41	0.01	1.865	4.30	0.17	9.6	90.2	0.2	-4.16	0.90	0.77	—	4.2	0.004	0.73	0.0	0.04	11.50	0.00	2.064	19.11	0.10	8.6	91.4	0.0	-1.88	2.37	0.91	0.79	—	145764	19024	64	0	98	0	0	logfile
✔	7WQT	32713	2022-07-08	2022-01-26	4.3	4.33	—	3.6	0.007	0.95	0.0	0.05	10.41	0.01	1.865	4.29	0.17	9.6	90.2	0.2	-4.16	0.89	0.74	—	3.4	0.003	0.72	0.0	0.04	11.80	0.00	2.097	14.53	0.10	7.6	92.4	0.0	-1.96	1.43	0.88	0.74	—	145764	19024	64	0	98	0	0	logfile
✔	6WH7	21668	2022-07-10	2020-04-07	2.78	2.79	—	2.9	0.011	0.89	0.0	0.07	9.91	0.01	1.989	21.15	0.71	3.5	96.2	0.3	-1.50	0.74	0.88	5.74	2.9	0.005	0.67	0.0	0.05	15.61	0.00	2.075	13.60	3.82	6.6	93.4	0.0	-1.13	0.57	0.74	0.89	4.03	151800	19020	60	0	0	0	0	logfile
✔	7AEF	11745	2022-07-09	2020-09-17	2.8	2.86	—	2.8	0.015	1.59	7.0	0.09	11.19	0.01	1.331	4.77	0.02	2.5	97.4	0.1	-0.11	0.67	0.78	3.01	2.8	0.004	0.68	0.0	0.05	16.76	0.00	1.980	4.42	2.23	4.0	96.0	0.0	-0.21	0.74	0.72	0.85	3.05	149535	19014	48	0	0	0	0	logfile
✔	6NUT	0522	2022-07-11	2019-02-01	3.1	3.21	3.12	3.2	0.016	1.35	0.0	0.08	12.09	0.01	1.275	4.10	0.32	0.8	99.2	0.0	-0.03	0.51	0.63	1.07	3.2	0.003	0.55	0.0	0.04	17.17	0.00	2.094	7.73	0.19	1.2	98.8	0.0	1.62	2.60	0.62	0.84	2.59	156150	18950	100	300	0	0	0	logfile
✘	7Roi	24597	2022-07-06	2021-07-30	4.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	137886	18894	201	0	0	0	0	logfile
✘	7Ro5	24588	2022-07-06	2021-07-30	4.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	137886	18894	201	0	0	0	0	logfile
✘	7RoH	24595	2022-07-06	2021-07-30	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	137886	18894	201	0	0	0	0	logfile

• ← previous
• Page 2 of 392
• next →