Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6AZ3	7025	2023-04-26	2017-09-09	2.5	3.08	—	3.1	0.012	1.29	0.0	0.06	16.54	0.03	1.349	4.53	0.96	6.4	93.4	0.2	-4.53	0.54	0.78	5.15	3.1	0.006	0.88	0.0	0.04	17.29	0.01	1.945	8.72	3.08	6.3	93.6	0.1	-1.41	0.34	0.54	0.80	3.89	126561	6390	91	3507	44	1019	0	logfile
✔	6ZGL	11210	2023-04-23	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.52	0.0	0.04	15.83	0.00	2.114	4.28	0.93	0.9	99.1	0.0	3.77	0.76	0.75	0.83	7.09	15760	1848	24	0	0	964	0	logfile
✘	8DBX	27316	2023-04-24	2022-06-14	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16968	1998	12	0	10	914	0	logfile
✔	7R44	14266	2023-04-25	2022-02-08	2.4	2.43	—	2.4	0.008	0.81	0.0	0.84	15.16	0.00	1.908	3.31	0.00	2.5	97.5	0.0	0.40	0.70	0.90	6.05	2.5	0.007	1.30	0.0	0.25	16.34	0.00	1.997	4.87	0.60	1.6	98.4	0.0	1.68	0.32	0.70	0.90	5.12	68213	8163	113	0	50	905	0	logfile
✔	7R43	14261	2023-04-25	2022-02-08	2.4	2.41	—	2.5	0.007	0.79	0.0	0.84	15.03	0.00	1.899	3.40	0.01	2.5	97.4	0.0	0.39	0.69	0.89	5.73	2.4	0.007	1.30	0.0	0.25	16.38	0.00	1.204	4.60	0.56	1.6	98.4	0.0	1.60	0.31	0.69	0.90	4.85	68334	8188	109	0	47	885	0	logfile
✔	7R46	14277	2023-04-24	2022-02-08	2.4	2.44	—	2.5	0.008	0.81	0.0	0.85	15.41	0.01	1.964	3.47	0.01	2.9	97.1	0.0	0.30	0.70	0.90	5.72	2.4	0.007	1.30	0.0	0.25	16.54	0.00	2.203	5.23	0.51	1.8	98.2	0.0	1.76	0.35	0.70	0.90	4.84	67614	8100	113	0	51	859	0	logfile
✘	8ENN	28274	2023-04-24	2022-09-30	2.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16749	1974	12	0	9	858	0	logfile
✔	7R4G	14307	2023-04-23	2022-02-08	2.5	2.48	—	2.5	0.008	0.81	0.0	0.86	15.25	0.01	1.869	4.23	0.03	3.2	96.8	0.0	-0.01	0.70	0.89	5.55	2.5	0.007	1.34	0.0	0.26	16.56	0.00	2.142	5.07	0.94	2.3	97.7	0.0	1.33	0.79	0.70	0.90	4.69	65153	7802	111	0	47	851	0	logfile
✔	7XMU	33305	2023-04-23	2022-04-26	2.3	2.51	2.33	2.5	0.016	0.90	0.0	0.05	17.56	0.04	1.897	4.23	1.57	2.6	97.4	0.0	-0.10	0.75	0.87	4.86	2.5	0.003	1.81	0.0	0.04	17.21	0.00	1.872	4.69	0.46	2.6	97.4	0.0	0.29	1.11	0.77	0.88	4.57	15294	1842	18	0	36	822	0	logfile
✔	7XMV	33306	2023-04-23	2022-04-27	2.6	2.75	2.70	2.8	0.014	0.89	0.0	0.05	15.79	0.03	1.853	5.35	1.18	3.6	96.4	0.0	-0.87	0.72	0.86	4.88	2.8	0.004	1.24	0.0	0.05	17.46	0.00	1.861	4.67	0.85	3.3	96.7	0.0	-0.01	1.13	0.74	0.87	4.48	15228	1842	18	0	30	810	0	logfile
✘	7VB7	31874	2023-04-29	2021-08-30	2.4	2.41	—	2.4	0.007	0.77	1.0	0.05	16.42	0.01	1.988	6.35	1.28	3.0	96.9	0.1	0.48	0.76	0.90	5.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29279	3543	45	0	19	736	0	logfile
✔	7VYN	32210	2023-04-29	2021-11-14	2.4	2.47	—	2.5	0.008	0.78	1.0	0.05	16.97	0.01	2.198	5.50	1.15	3.5	96.5	0.1	0.41	0.77	0.91	5.04	2.4	0.003	0.57	0.0	0.04	17.05	0.00	2.157	4.55	1.68	3.5	96.5	0.1	0.59	0.60	0.76	0.92	5.01	29298	3543	45	0	20	735	0	logfile
✔	7VBZ	31886	2023-04-29	2021-09-01	2.4	2.48	—	2.5	0.009	0.93	6.0	0.06	16.44	0.01	1.907	11.30	2.07	3.7	96.0	0.3	-0.05	0.74	0.89	4.87	2.5	0.003	0.56	0.0	0.04	17.07	0.00	2.104	5.66	1.64	3.0	96.9	0.1	0.42	0.90	0.75	0.91	5.12	29292	3543	45	0	19	730	0	logfile
✘	7Pi5	13430	2023-04-28	2021-08-19	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76287	7455	123	0	343	718	0	logfile
✔	7VBN	31883	2023-04-28	2021-08-31	2.4	2.48	—	2.5	0.006	0.75	2.0	0.05	16.47	0.01	2.002	8.61	1.39	3.1	96.8	0.1	0.39	0.78	0.89	4.54	2.5	0.003	0.58	0.0	0.04	16.95	0.00	2.109	5.90	2.12	3.2	96.7	0.1	0.33	0.81	0.78	0.91	4.61	29042	3522	44	0	17	713	0	logfile
✔	7VZ1	32218	2023-04-28	2021-11-15	2.5	2.55	—	2.5	0.008	0.78	0.0	0.05	17.15	0.01	2.201	6.34	1.17	3.3	96.6	0.1	0.11	0.79	0.91	4.60	2.5	0.003	0.54	0.0	0.04	17.22	0.00	2.155	5.08	1.84	3.4	96.6	0.0	0.37	0.25	0.78	0.92	4.45	28737	3488	44	0	17	712	0	logfile
✔	7VWJ	32154	2023-04-28	2021-11-10	2.6	2.67	—	2.7	0.007	0.72	0.0	0.04	14.07	0.01	1.965	7.48	0.13	2.9	97.0	0.0	0.65	0.77	0.89	4.69	2.6	0.003	0.54	0.0	0.04	16.51	0.00	2.128	6.78	1.47	3.3	96.7	0.0	0.39	0.32	0.77	0.91	4.33	28748	3488	44	0	17	711	0	logfile
✘	6TRC	10558	2023-04-28	2019-12-18	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75591	6849	99	0	402	651	0	logfile
✘	6KMX	0727	2023-04-23	2019-08-01	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65112	5919	72	0	363	636	0	logfile
✘	6KMW	0726	2023-04-22	2019-08-01	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64083	5739	63	0	366	627	0	logfile

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