Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SHT	10205	2022-05-17	2019-08-08	2.73	2.88	2.78	2.8	0.015	1.55	0.0	0.07	17.80	0.01	0.000	10.21	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.004	0.57	0.0	0.04	19.60	0.00	0.000	5.46	2.24	1.4	98.3	0.3	5.07	1.76	0.72	0.84	2.18	37152	4176	24	0	48	1728	0	logfile
✔	7KoD	22972	2022-05-14	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.81	0.00	1.858	2.53	0.27	0.6	99.4	0.0	5.26	0.58	0.88	0.94	8.02	68186	4128	48	0	0	1727	32643	logfile
✔	7DCo	30637	2022-05-16	2020-10-26	2.5	2.59	—	2.6	0.010	1.11	8.0	0.08	13.06	0.01	2.079	5.98	1.87	4.4	95.1	0.5	-3.91	0.53	0.65	3.00	2.6	0.007	0.80	1.0	0.05	16.26	0.01	1.790	8.95	2.61	4.3	95.6	0.1	-0.06	0.72	0.56	0.71	2.31	129875	15294	91	556	24	1714	0	logfile
✔	7o71	12742	2022-05-14	2021-04-12	2.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67428	8041	102	0	49	1616	0	logfile
✔	6ZK9	11241	2022-05-16	2020-06-30	2.3	2.55	—	2.4	0.008	1.05	0.0	1.58	10.49	0.01	2.257	5.22	0.07	3.2	96.8	0.0	-2.52	0.78	0.92	6.57	2.4	0.012	2.33	0.0	0.48	15.10	0.00	2.075	8.96	0.93	2.6	97.4	0.0	0.54	0.47	0.80	0.93	6.04	29587	3480	45	0	19	1472	0	logfile
✔	7o6E	12738	2022-05-17	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.61	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.004	0.52	0.0	0.03	18.17	0.01	2.172	3.96	0.38	0.6	99.4	0.0	4.21	0.27	0.88	0.89	5.41	35304	4248	48	0	0	1392	0	logfile
✔	6Z0U	11023	2022-05-16	2020-05-11	2.9	2.99	—	2.9	0.007	0.73	0.0	0.05	13.19	0.01	2.040	10.20	0.52	6.5	93.5	0.0	-3.59	0.78	0.89	4.49	2.9	0.003	0.60	0.0	0.04	15.05	0.00	2.090	8.80	0.58	4.1	95.9	0.0	-0.06	0.38	0.75	0.87	3.60	87288	10896	72	0	24	1392	0	logfile
✔	6ZKA	11242	2022-05-17	2020-06-30	2.5	2.55	—	2.5	0.009	1.02	0.0	0.16	12.79	0.01	2.189	4.74	0.07	2.5	97.5	0.0	-2.18	0.74	0.91	6.10	2.5	0.004	0.61	0.0	0.04	15.95	0.00	2.110	9.23	1.35	2.1	97.9	0.0	1.72	1.12	0.75	0.91	5.17	40800	4694	74	0	28	1293	0	logfile
✔	7RCV	24407	2022-05-12	2021-07-08	2.01	1.78	—	1.9	0.024	2.35	0.0	0.13	20.29	0.01	1.915	14.01	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.004	0.79	0.0	0.05	18.79	0.01	2.078	12.10	1.79	2.8	97.2	0.0	0.86	0.91	0.79	0.82	5.23	54656	5544	114	0	228	1236	0	logfile
✔	7N8o	24239	2022-05-12	2021-06-15	1.93	1.73	—	1.9	0.024	2.36	0.0	0.13	20.20	0.01	1.522	14.85	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.9	0.005	0.77	0.0	0.04	18.49	0.01	2.020	11.59	1.40	2.6	97.4	0.0	1.31	0.36	0.75	0.77	5.38	54656	5544	113	0	228	1236	0	logfile
✔	7JFo	22308	2022-05-17	2020-07-17	2.13	2.12	—	2.1	0.022	1.67	2.0	0.11	12.07	0.01	2.198	6.82	1.23	3.9	96.1	0.0	-0.96	0.72	0.78	6.96	2.1	0.004	0.70	0.0	0.05	14.50	0.01	2.200	7.44	0.77	2.8	97.2	0.0	1.05	0.78	0.70	0.81	5.91	38958	4832	40	0	0	1198	0	logfile
✔	6QSU	4629	2022-05-15	2019-02-22	2.4	2.64	2.56	2.6	0.006	0.64	0.0	0.05	13.49	0.00	1.918	4.91	0.61	4.6	95.4	0.0	0.27	0.81	0.87	4.68	2.6	0.002	0.53	0.0	0.04	16.53	0.00	1.949	6.16	0.91	3.2	96.8	0.0	0.40	1.15	0.73	0.86	4.20	75758	9684	60	0	36	1178	0	logfile
✔	5WFS	8829	2022-05-25	2017-07-12	3.0	3.09	3.13	3.0	0.008	1.18	2.0	0.10	18.12	0.02	1.324	4.25	3.10	9.3	88.2	2.4	-4.11	0.73	0.77	2.42	3.0	0.006	0.84	0.0	0.04	17.51	0.01	1.080	12.75	3.60	8.3	91.1	0.5	-1.91	0.63	0.83	0.84	2.24	155100	6324	114	4802	1479	1175	0	logfile
✔	7JSX	22462	2022-05-17	2020-08-16	2.06	2.05	—	2.1	0.022	1.67	2.0	0.11	11.97	0.01	2.201	6.88	1.26	3.9	96.1	0.0	-1.03	0.74	0.76	5.10	2.0	0.012	1.10	0.0	0.04	14.60	0.00	2.135	9.41	0.80	2.4	97.6	0.0	1.01	0.64	0.82	0.89	6.51	38813	4832	40	0	0	1141	0	logfile
✔	7P8W	13256	2022-05-14	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.89	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.62	0.0	0.04	15.61	0.00	2.221	3.56	0.46	2.9	97.1	0.0	0.56	1.15	0.86	0.91	6.13	17668	2008	12	0	8	1110	0	logfile
✔	5K12	8194	2022-05-13	2016-05-17	1.8	2.40	—	2.8	0.008	0.97	0.0	0.06	10.27	0.01	2.051	19.79	0.82	3.8	96.2	0.0	-2.53	0.66	0.74	5.80	2.8	0.010	1.13	2.0	0.04	15.20	0.00	1.443	13.43	0.20	1.8	98.2	0.0	1.71	1.05	0.71	0.89	3.78	14856	1764	12	0	0	1086	0	logfile
✘	5XNL	6741	2022-05-17	2017-05-23	2.7	2.75	—	2.8	0.013	1.56	0.0	0.08	15.89	0.02	1.207	10.24	0.08	2.1	97.9	0.0	-3.12	0.55	0.78	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98986	9364	136	0	490	1076	0	logfile
✔	7M4Y	23670	2022-05-17	2021-03-22	2.5	1.72	—	1.5	0.008	0.60	2.0	0.05	16.30	0.02	1.783	3.52	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.005	0.79	0.0	0.04	16.55	0.01	1.670	4.79	3.79	3.1	96.7	0.1	0.33	0.30	0.79	0.77	3.89	139817	5511	80	4453	200	1044	0	logfile
✘	6AZ3	7025	2022-05-15	2017-09-09	2.5	3.08	—	3.1	0.012	1.23	0.0	0.06	16.44	0.03	1.349	4.56	0.96	6.4	93.4	0.2	-4.53	0.54	0.78	5.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126561	6390	91	3507	44	1019	0	logfile
✘	7A5V	11657	2022-05-14	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	13.54	0.02	0.000	2.47	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21155	2275	30	0	85	1015	0	logfile

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