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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7P8W | 13256 | 2022-04-06 | 2021-07-23 | 2.2 | 2.34 | — | 2.3 | 0.014 | 1.79 | 4.0 | 0.09 | 14.82 | 0.01 | 2.340 | 1.39 | 0.75 | 3.8 | 96.0 | 0.2 | -1.36 | 0.85 | 0.92 | 6.91 | 2.3 | 0.003 | 0.62 | 0.0 | 0.04 | 15.61 | 0.00 | 2.221 | 3.19 | 0.46 | 2.9 | 97.1 | 0.0 | 0.56 | 1.15 | 0.86 | 0.91 | 6.13 | 17668 | 2008 | 12 | 0 | 8 | 1110 | 0 | logfile |
✔ | 5K12 | 8194 | 2022-04-05 | 2016-05-17 | 1.8 | 2.40 | — | 2.8 | 0.008 | 0.97 | 0.0 | 0.06 | 10.27 | 0.01 | 2.051 | 19.79 | 0.82 | 3.8 | 96.2 | 0.0 | -2.53 | 0.66 | 0.74 | 5.80 | 2.8 | 0.010 | 1.13 | 2.0 | 0.04 | 15.20 | 0.00 | 1.443 | 13.32 | 0.20 | 1.8 | 98.2 | 0.0 | 1.71 | 1.05 | 0.71 | 0.89 | 3.78 | 14856 | 1764 | 12 | 0 | 0 | 1086 | 0 | logfile |
✘ | 5XNL | 6741 | 2022-04-09 | 2017-05-23 | 2.7 | 2.75 | — | 2.8 | 0.013 | 1.36 | 0.0 | 0.07 | 15.73 | 0.02 | 1.207 | 10.15 | 0.08 | 2.1 | 97.9 | 0.0 | -3.12 | 0.55 | 0.78 | 3.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98986 | 9364 | 136 | 0 | 490 | 1076 | 0 | logfile |
✔ | 7M4Y | 23670 | 2022-04-09 | 2021-03-22 | 2.5 | 1.72 | — | 1.5 | 0.008 | 0.60 | 2.0 | 0.05 | 16.30 | 0.02 | 1.783 | 3.46 | 2.14 | 2.5 | 97.3 | 0.2 | 1.41 | 0.77 | 0.73 | 3.74 | 1.5 | 0.005 | 0.79 | 0.0 | 0.04 | 16.55 | 0.01 | 1.670 | 4.70 | 3.79 | 3.1 | 96.7 | 0.1 | 0.33 | 0.30 | 0.79 | 0.77 | 3.89 | 139817 | 5511 | 80 | 4453 | 200 | 1044 | 0 | logfile |
✘ | 6AZ3 | 7025 | 2022-04-07 | 2017-09-09 | 2.5 | 3.08 | — | 3.1 | 0.012 | 1.23 | 0.0 | 0.06 | 16.44 | 0.03 | 1.349 | 4.52 | 0.96 | 6.4 | 93.4 | 0.2 | -4.53 | 0.54 | 0.78 | 5.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126561 | 6390 | 91 | 3507 | 44 | 1019 | 0 | logfile |
✘ | 7A5V | 11657 | 2022-04-06 | 2020-08-22 | 1.7 | 1.73 | 1.69 | 1.8 | 0.014 | 1.59 | 0.0 | 0.09 | 13.54 | 0.02 | 0.000 | 2.35 | 0.48 | 2.2 | 97.8 | 0.0 | -0.05 | 0.61 | 0.79 | 6.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21155 | 2275 | 30 | 0 | 85 | 1015 | 0 | logfile |
✔ | 5WE4 | 8814 | 2022-04-16 | 2017-07-07 | 3.1 | 3.04 | 3.02 | 3.0 | 0.008 | 1.16 | 3.0 | 0.10 | 17.51 | 0.02 | 1.575 | 3.75 | 3.52 | 9.8 | 87.9 | 2.3 | -4.03 | 0.78 | 0.81 | 2.62 | 3.0 | 0.009 | 0.94 | 0.0 | 0.05 | 17.15 | 0.01 | 0.977 | 12.67 | 0.99 | 9.2 | 90.2 | 0.6 | -2.13 | 3.97 | 0.83 | 0.82 | 2.48 | 155067 | 6324 | 117 | 4802 | 1620 | 996 | 0 | logfile |
✔ | 6ZGL | 11210 | 2022-04-05 | 2020-06-19 | 1.9 | 1.87 | — | 1.9 | 0.013 | 1.55 | 0.0 | 0.12 | 15.52 | 0.01 | 2.196 | 9.00 | 3.73 | 1.1 | 98.9 | 0.0 | 0.13 | 0.73 | 0.83 | 7.03 | 1.9 | 0.003 | 0.56 | 0.0 | 0.04 | 15.75 | 0.00 | 2.118 | 4.55 | 1.00 | 0.6 | 99.4 | 0.0 | 3.59 | 0.75 | 0.76 | 0.83 | 7.07 | 15760 | 1848 | 24 | 0 | 0 | 964 | 0 | logfile |
✔ | 6TSK | 10564 | 2022-04-08 | 2019-12-20 | 2.3 | 2.36 | — | 2.3 | 0.012 | 1.54 | 24.0 | 0.11 | 16.57 | 0.02 | 1.535 | 1.57 | 2.42 | 2.9 | 97.0 | 0.1 | -1.00 | 0.84 | 0.94 | 7.33 | 2.3 | 0.003 | 0.63 | 0.0 | 0.05 | 17.01 | 0.00 | 1.964 | 3.03 | 1.73 | 2.5 | 97.5 | 0.0 | 0.43 | 0.82 | 0.81 | 0.91 | 6.45 | 33632 | 4060 | 12 | 0 | 8 | 964 | 0 | logfile |
✔ | 7DD9 | 30650 | 2022-04-08 | 2020-10-28 | 2.4 | 2.49 | 2.37 | 2.4 | 0.007 | 0.71 | 0.0 | 0.05 | 15.88 | 0.00 | 1.932 | 8.69 | 1.93 | 7.1 | 92.9 | 0.0 | -1.19 | 0.79 | 0.87 | 4.70 | 2.4 | 0.004 | 0.64 | 0.0 | 0.05 | 16.22 | 0.00 | 1.945 | 9.39 | 2.10 | 6.2 | 93.8 | 0.0 | -0.98 | 0.22 | 0.80 | 0.88 | 4.84 | 37149 | 4516 | 12 | 0 | 12 | 949 | 0 | logfile |
✔ | 7oLC | 12976 | 2022-04-17 | 2021-05-19 | 2.9 | 3.43 | — | 3.2 | 0.003 | 0.45 | 0.0 | 0.03 | 14.06 | 0.01 | 1.848 | 4.35 | 0.04 | 4.4 | 95.6 | 0.0 | -1.10 | 0.78 | 0.86 | 3.30 | 3.2 | 0.006 | 0.65 | 0.0 | 0.04 | 15.41 | 0.01 | 1.691 | 6.73 | 2.43 | 5.5 | 94.5 | 0.0 | -0.70 | 0.32 | 0.81 | 0.88 | 2.82 | 207344 | 11862 | 127 | 5231 | 579 | 945 | 0 | logfile |
✔ | 6Z0V | 11024 | 2022-04-09 | 2020-05-11 | 2.6 | 2.68 | — | 2.6 | 0.010 | 0.87 | 0.0 | 0.06 | 13.09 | 0.01 | 1.818 | 9.89 | 0.27 | 5.3 | 94.7 | 0.0 | -2.69 | 0.73 | 0.87 | 5.10 | 2.7 | 0.003 | 0.60 | 0.0 | 0.04 | 14.73 | 0.00 | 2.032 | 7.66 | 0.53 | 2.5 | 97.5 | 0.0 | 0.35 | 1.23 | 0.76 | 0.88 | 4.39 | 42972 | 5424 | 36 | 0 | 12 | 936 | 0 | logfile |
✔ | 7oJ5 | 12938 | 2022-04-08 | 2021-05-13 | 2.4 | 2.43 | — | 2.4 | 0.002 | 0.53 | 0.0 | 0.04 | 16.61 | 0.00 | 2.177 | 1.81 | 1.95 | 1.6 | 98.4 | 0.0 | -0.94 | 0.76 | 0.87 | 3.97 | 2.4 | 0.004 | 0.83 | 0.0 | 0.05 | 16.82 | 0.00 | 2.124 | 3.47 | 1.30 | 2.7 | 97.3 | 0.0 | 0.60 | 0.34 | 0.79 | 0.89 | 4.75 | 35323 | 4416 | 72 | 0 | 48 | 931 | 0 | logfile |
✔ | 5WDT | 8813 | 2022-04-16 | 2017-07-06 | 3.0 | 3.20 | 3.19 | 3.2 | 0.008 | 1.15 | 2.0 | 0.10 | 17.68 | 0.02 | 1.527 | 4.72 | 3.29 | 9.7 | 88.1 | 2.3 | -4.08 | 0.77 | 0.80 | 2.46 | 3.1 | 0.009 | 0.93 | 0.0 | 0.05 | 17.21 | 0.01 | 1.642 | 11.94 | 4.67 | 9.6 | 89.9 | 0.6 | -1.85 | 3.20 | 0.85 | 0.86 | 2.43 | 155275 | 6324 | 125 | 4802 | 1910 | 920 | 0 | logfile |
✔ | 6YBQ | 10771 | 2022-04-08 | 2020-03-17 | 1.96 | 2.06 | — | 2.0 | 0.039 | 1.58 | 0.0 | 0.05 | 15.05 | 0.01 | 1.550 | 4.58 | 0.00 | 2.7 | 97.3 | 0.0 | -1.94 | 0.82 | 0.87 | 6.46 | 2.0 | 0.003 | 0.72 | 0.0 | 0.05 | 15.91 | 0.00 | 2.108 | 4.57 | 0.41 | 2.4 | 97.6 | 0.0 | 0.00 | 0.46 | 0.84 | 0.89 | 6.08 | 34092 | 4289 | 36 | 0 | 12 | 871 | 0 | logfile |
✔ | 7B5K | 12035 | 2022-04-12 | 2020-12-03 | 2.9 | 2.60 | 2.95 | 2.8 | 0.006 | 0.90 | 0.0 | 0.05 | 14.17 | 0.02 | 1.504 | 11.12 | 0.45 | 3.9 | 95.9 | 0.1 | -3.45 | 0.76 | 0.80 | 3.32 | 2.8 | 0.005 | 0.75 | 1.0 | 0.05 | 14.92 | 0.01 | 1.419 | 6.73 | 2.41 | 4.3 | 95.6 | 0.0 | -0.49 | 0.42 | 0.77 | 0.82 | 2.86 | 148576 | 5684 | 80 | 4790 | 362 | 854 | 0 | logfile |
✔ | 3JCJ | 6559 | 2022-04-12 | 2015-12-18 | 3.7 | 3.96 | — | 3.8 | 0.007 | 1.05 | 18.0 | 0.10 | 12.45 | 0.01 | 1.344 | 2.06 | 0.39 | 9.2 | 89.0 | 1.8 | -3.55 | 0.80 | 0.75 | 1.31 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 15.33 | 0.01 | 1.817 | 18.09 | 0.79 | 11.5 | 87.6 | 0.9 | -2.50 | 2.01 | 0.83 | 0.85 | 1.24 | 148347 | 6249 | 82 | 4594 | 197 | 837 | 0 | logfile |
✘ | 7M4V | 23667 | 2022-04-08 | 2021-03-22 | 2.54 | 2.36 | — | 2.4 | 0.002 | 0.51 | 0.0 | 0.03 | 14.92 | 0.00 | 1.183 | 2.89 | 0.00 | 2.3 | 97.6 | 0.2 | 0.82 | 0.71 | 0.79 | 4.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 86404 | 3128 | 48 | 2847 | 162 | 802 | 0 | logfile |
✔ | 7o1C | 12695 | 2022-04-12 | 2021-03-29 | 2.6 | 3.02 | 2.70 | 2.4 | 0.018 | 1.91 | 0.0 | 0.06 | 14.39 | 0.02 | 0.055 | 6.78 | 0.04 | 5.1 | 94.8 | 0.1 | -1.96 | 0.80 | 0.83 | 3.37 | 2.3 | 0.005 | 0.71 | 0.0 | 0.04 | 14.72 | 0.01 | 0.867 | 8.21 | 2.44 | 4.4 | 95.5 | 0.1 | -0.43 | 1.00 | 0.81 | 0.84 | 2.98 | 148175 | 6042 | 76 | 4638 | 489 | 800 | 0 | logfile |
✔ | 7M4W | 23668 | 2022-04-08 | 2021-03-22 | 2.55 | 1.74 | — | 1.6 | 0.008 | 0.57 | 0.0 | 0.05 | 15.01 | 0.01 | 1.760 | 3.08 | 0.02 | 2.8 | 97.0 | 0.2 | 1.38 | 0.77 | 0.74 | 3.81 | 1.5 | 0.008 | 0.91 | 0.0 | 0.05 | 16.24 | 0.01 | 1.619 | 4.94 | 2.38 | 3.6 | 96.3 | 0.1 | 0.19 | 0.91 | 0.80 | 0.78 | 3.76 | 137923 | 5518 | 76 | 4373 | 195 | 797 | 0 | logfile |