Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZK9	11241	2023-08-20	2020-06-30	2.3	2.55	—	2.4	0.008	1.05	0.0	1.58	10.47	0.01	2.257	5.07	0.07	3.2	96.8	0.0	-2.52	0.78	0.92	6.57	2.4	0.012	2.33	0.0	0.48	15.01	0.00	2.065	8.80	1.07	2.7	97.3	0.0	0.40	0.47	0.80	0.93	6.07	29587	3480	45	0	19	1472	0	logfile
✔	7FGH	31581	2023-08-26	2021-07-27	2.18	2.32	—	2.3	0.009	1.06	0.0	0.06	16.10	0.01	2.118	1.61	1.31	3.8	96.2	0.0	-0.25	0.77	0.80	5.03	2.3	0.002	0.54	0.0	0.04	16.20	0.00	2.275	1.96	0.87	2.1	97.9	0.0	0.51	1.24	0.82	0.88	4.51	44532	5448	36	12	12	1416	0	logfile
✔	8CAi	16526	2023-08-24	2023-01-24	2.08	1.77	1.93	1.9	0.014	1.53	2.0	0.14	13.98	0.03	1.839	0.59	0.86	3.7	96.2	0.1	-1.66	0.65	0.81	5.19	1.9	0.005	0.84	0.0	0.05	14.26	0.01	1.790	7.42	1.41	3.0	97.0	0.0	0.45	1.58	0.74	0.85	4.96	37814	1552	33	1114	90	1416	0	logfile
✔	7R4F	14302	2023-08-13	2022-02-08	2.4	2.39	—	2.3	0.007	0.79	0.0	0.87	17.28	0.01	1.904	2.94	1.29	2.5	97.5	0.0	0.66	0.73	0.90	5.70	2.4	0.007	1.32	0.0	0.26	17.02	0.00	2.082	4.51	1.41	1.6	98.4	0.0	1.78	0.28	0.73	0.91	5.00	65494	7788	114	0	44	1415	0	logfile
✔	6Z0U	11023	2023-08-21	2020-05-11	2.9	2.99	—	2.9	0.007	0.73	0.0	0.05	13.19	0.01	2.040	10.02	0.52	6.5	93.5	0.0	-3.59	0.78	0.89	4.49	2.9	0.002	0.60	0.0	0.04	14.99	0.00	2.101	8.84	0.83	4.5	95.5	0.0	-0.17	0.38	0.77	0.89	3.55	87288	10896	72	0	24	1392	0	logfile
✔	7o6E	12738	2023-08-23	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.47	0.0	0.03	18.14	0.00	2.203	3.42	0.38	0.7	99.3	0.0	4.41	0.27	0.88	0.90	5.26	35304	4248	48	0	0	1392	0	logfile
✔	8A5i	15175	2023-08-21	2022-06-15	2.3	1.92	2.20	2.2	0.011	1.72	1.0	0.12	15.57	0.02	1.234	3.32	2.48	5.4	93.2	1.4	-2.45	0.49	0.73	5.52	2.1	0.005	0.83	0.0	0.04	15.73	0.01	1.569	7.88	2.08	4.3	95.5	0.2	-0.37	0.88	0.68	0.85	5.34	89799	2973	56	3022	172	1381	0	logfile
✔	7R45	14272	2023-08-15	2022-02-08	2.4	2.37	—	2.3	0.008	0.84	0.0	0.85	17.20	0.01	1.801	2.78	1.20	2.3	97.7	0.0	0.76	0.72	0.90	5.82	2.3	0.007	1.32	0.0	0.26	17.11	0.00	1.962	4.17	1.25	1.7	98.3	0.0	1.61	1.06	0.73	0.91	5.46	68195	8098	115	0	52	1334	0	logfile
✔	8AB6	15312	2023-08-22	2022-07-04	2.0	1.80	1.92	1.9	0.010	1.60	28.0	0.11	16.93	0.01	2.091	3.07	1.89	2.3	97.7	0.0	-0.82	0.68	0.86	6.61	1.9	0.004	0.68	0.0	0.04	16.61	0.00	1.996	3.87	0.65	1.7	98.3	0.0	1.95	0.98	0.73	0.87	6.06	32914	3878	53	0	30	1326	0	logfile
✔	7SCA	25031	2023-08-10	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.55	0.0	0.04	16.60	0.00	2.121	8.28	0.87	0.9	99.1	0.0	2.87	1.09	0.79	0.85	5.28	55437	6836	116	0	54	1325	0	logfile
✔	7R41	14251	2023-08-16	2022-02-08	2.3	2.35	—	2.4	0.008	0.85	0.0	0.84	16.93	0.01	1.904	3.40	1.01	2.4	97.5	0.0	0.57	0.71	0.90	5.72	2.4	0.007	1.30	0.0	0.25	16.85	0.00	2.035	5.04	1.01	1.7	98.2	0.0	1.70	0.79	0.71	0.91	5.10	69138	8194	111	0	57	1307	0	logfile
✔	6ZKA	11242	2023-08-25	2020-06-30	2.5	2.55	—	2.5	0.009	1.02	0.0	0.16	12.78	0.01	2.189	4.53	0.07	2.5	97.5	0.0	-2.18	0.74	0.91	6.10	2.5	0.003	0.59	0.0	0.04	15.85	0.00	2.131	9.15	1.01	2.1	97.9	0.0	1.81	1.13	0.75	0.91	5.09	40800	4694	74	0	28	1293	0	logfile
✔	7RCV	24407	2023-08-10	2021-07-08	2.01	1.78	—	1.9	0.024	2.38	0.0	0.11	20.31	0.01	1.915	13.94	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.007	0.98	0.0	0.06	19.24	0.01	1.984	13.17	1.79	3.0	97.0	0.0	0.41	0.91	0.81	0.84	5.30	54656	5544	114	0	228	1236	0	logfile
✔	7N8o	24239	2023-08-10	2021-06-15	1.93	1.73	—	1.9	0.025	2.40	0.0	0.11	20.28	0.01	1.522	14.77	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.004	0.81	0.0	0.05	18.74	0.01	2.000	12.74	1.66	3.0	97.0	0.0	0.83	0.34	0.77	0.80	5.41	54656	5544	113	0	228	1236	0	logfile
✔	7JFo	22308	2023-08-24	2020-07-17	2.13	2.12	—	2.1	0.022	1.67	2.0	0.11	12.07	0.01	2.198	6.71	1.23	3.9	96.1	0.0	-0.96	0.72	0.78	6.96	2.1	0.003	0.66	0.0	0.05	14.53	0.01	2.219	7.32	1.08	2.6	97.4	0.0	1.20	0.78	0.71	0.82	5.81	38958	4832	40	0	0	1198	0	logfile
✔	6QSU	4629	2023-08-18	2019-02-22	2.4	2.64	2.56	2.6	0.006	0.65	0.0	0.05	13.44	0.00	1.918	4.58	0.61	4.6	95.4	0.0	0.27	0.81	0.87	4.68	2.6	0.002	0.53	0.0	0.04	16.49	0.00	1.940	5.87	0.67	3.1	96.9	0.0	0.36	1.15	0.72	0.86	4.21	75758	9684	60	0	36	1178	0	logfile
✘	7Z15	14441	2023-08-26	2022-02-24	1.93	2.40	1.98	2.3	0.012	1.01	9.0	0.06	15.49	0.01	1.723	3.87	0.83	1.6	98.4	0.0	1.32	0.83	0.86	6.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46112	2888	32	0	16	1171	22357	logfile
✔	7JSX	22462	2023-08-24	2020-08-16	2.06	2.05	—	2.1	0.022	1.67	2.0	0.11	11.97	0.01	2.201	6.77	1.26	3.9	96.1	0.0	-1.03	0.74	0.76	5.10	2.0	0.004	0.68	0.0	0.04	14.32	0.00	2.118	8.07	0.82	2.5	97.5	0.0	0.99	0.64	0.83	0.90	6.36	38813	4832	40	0	0	1141	0	logfile
✔	7P8W	13256	2023-08-15	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.55	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.64	0.0	0.04	15.80	0.00	2.207	3.16	0.52	3.0	97.0	0.0	0.52	1.15	0.85	0.91	6.20	17668	2008	12	0	8	1110	0	logfile
✔	7QSN	14139	2023-08-16	2022-01-13	2.81	2.74	2.82	2.7	0.008	0.92	0.0	0.85	15.31	0.00	1.443	3.83	0.01	3.3	96.7	0.0	-0.45	0.77	0.87	4.68	2.7	0.007	1.33	0.0	0.26	16.43	0.00	1.937	6.36	1.15	2.4	97.6	0.0	1.19	1.17	0.77	0.88	4.03	69320	8201	116	0	59	1096	0	logfile

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