Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oJ5	12938	2021-10-06	2021-05-13	2.4	2.43	—	2.4	0.002	0.53	0.0	0.04	16.61	0.00	2.177	1.84	1.95	1.6	98.4	0.0	-0.94	0.76	0.87	3.97	2.4	0.005	0.85	0.0	0.05	17.00	0.00	2.115	3.46	1.35	2.7	97.3	0.0	0.56	0.34	0.78	0.89	4.45	35323	4416	72	0	48	931	0	logfile
✔	5WDT	8813	2021-10-13	2017-07-06	3.0	3.20	3.19	3.2	0.008	1.15	2.0	0.10	17.68	0.02	1.527	4.72	3.29	9.7	88.1	2.3	-4.08	0.77	0.80	2.46	3.1	0.009	0.92	0.0	0.05	17.17	0.01	1.425	12.16	4.47	9.4	90.1	0.5	-1.68	3.22	0.79	0.82	2.46	155275	6324	125	4802	1910	920	0	logfile
✘	6YBQ	10771	2021-10-06	2020-03-17	1.96	2.06	—	2.0	0.039	1.60	0.0	0.05	15.08	0.01	1.550	4.52	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34092	4289	36	0	12	871	0	logfile
✔	7B5K	12035	2021-10-10	2020-12-03	2.9	2.60	2.95	2.8	0.006	0.90	0.0	0.05	14.17	0.02	1.504	11.10	0.45	3.9	95.9	0.1	-3.45	0.76	0.80	3.32	2.8	0.006	0.79	0.0	0.04	15.07	0.01	1.375	6.90	2.48	4.7	95.2	0.0	-0.58	0.42	0.79	0.84	2.90	148576	5684	80	4790	362	854	0	logfile
✔	3JCJ	6559	2021-10-10	2015-12-18	3.7	3.96	—	3.8	0.007	1.05	18.0	0.10	12.45	0.01	1.344	2.04	0.39	9.2	89.0	1.8	-3.55	0.80	0.75	1.31	3.8	0.006	0.76	0.0	0.04	15.70	0.01	1.808	20.86	1.18	12.7	86.5	0.8	-2.57	3.25	0.83	0.86	1.21	148347	6249	82	4594	197	837	0	logfile
✘	7M4V	23667	2021-10-06	2021-03-22	2.54	2.36	—	2.4	0.002	0.51	0.0	0.03	14.92	0.00	1.183	2.88	0.00	2.3	97.6	0.2	0.82	0.71	0.79	4.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	86404	3128	48	2847	162	802	0	logfile
✔	7o1C	12695	2021-10-10	2021-03-29	2.6	3.02	2.70	2.4	0.018	1.91	0.0	0.06	14.39	0.02	0.055	6.72	0.04	5.1	94.8	0.1	-1.96	0.80	0.83	3.37	2.3	0.004	0.65	0.0	0.04	14.59	0.01	1.028	8.34	2.10	4.0	95.9	0.1	-0.35	1.37	0.81	0.83	2.94	148175	6042	76	4638	489	800	0	logfile
✔	7M4W	23668	2021-10-06	2021-03-22	2.55	1.74	—	1.6	0.008	0.57	0.0	0.05	15.01	0.01	1.760	3.05	0.02	2.8	97.0	0.2	1.38	0.77	0.74	3.81	1.5	0.009	1.00	0.0	0.05	16.39	0.01	1.651	5.30	2.58	3.8	96.1	0.2	-0.01	0.92	0.80	0.78	3.83	137923	5518	76	4373	195	797	0	logfile
✔	7o19	12693	2021-10-08	2021-03-29	2.9	3.19	2.93	2.6	0.016	1.85	0.0	0.05	14.10	0.02	1.430	6.52	0.04	3.7	96.2	0.1	-1.50	0.82	0.86	3.50	2.6	0.003	0.63	0.0	0.04	14.31	0.01	1.850	8.25	1.76	3.5	96.4	0.1	0.12	0.40	0.85	0.87	3.36	145019	5694	74	4635	173	793	0	logfile
✘	7EFC	31083	2021-10-04	2021-03-21	1.7	1.76	1.83	1.9	0.033	3.25	80.0	0.10	14.95	0.00	0.000	2.92	2.15	2.5	96.6	0.8	-0.84	0.73	0.80	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✘	7EFD	31084	2021-10-04	2021-03-21	1.77	1.79	1.83	1.9	0.034	3.25	60.0	0.10	15.30	0.00	0.000	2.62	2.15	1.7	97.5	0.8	-0.54	0.71	0.78	5.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	5A1A	2984	2021-10-06	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.14	0.01	0.020	13.89	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.004	0.76	0.0	0.05	17.54	0.01	1.962	11.69	2.95	3.6	96.3	0.1	-0.66	0.61	0.53	0.79	4.13	33696	4088	12	0	20	776	0	logfile
✔	7N8H	24236	2021-10-06	2021-06-14	2.3	2.39	2.37	2.4	0.012	1.25	0.0	0.08	11.01	0.01	2.409	1.59	0.00	1.7	98.3	0.0	0.64	0.73	0.78	4.69	2.4	0.004	0.66	0.0	0.05	14.36	0.00	1.997	4.16	1.26	1.9	98.1	0.0	0.60	0.99	0.76	0.84	4.73	32921	4356	36	0	60	771	0	logfile
✔	7LXY	23579	2021-10-06	2021-03-05	2.2	2.32	2.27	2.3	0.011	1.21	0.0	0.07	11.01	0.01	2.182	1.39	0.09	1.8	98.2	0.0	0.45	0.75	0.81	4.97	2.3	0.004	0.63	0.0	0.05	14.31	0.00	2.031	5.24	1.39	1.9	98.1	0.0	1.03	0.54	0.77	0.84	4.46	33987	4446	36	0	69	729	0	logfile
✔	5WF0	8826	2021-10-12	2017-07-11	3.6	3.35	3.39	3.3	0.008	1.13	3.0	0.10	17.65	0.02	0.789	3.27	4.47	9.7	87.8	2.4	-4.19	0.75	0.77	2.17	3.3	0.006	0.82	0.0	0.04	16.93	0.01	1.815	13.55	0.89	8.7	90.7	0.6	-1.75	3.17	0.76	0.78	2.03	154600	6324	110	4802	1486	676	0	logfile
✘	6TRC	10558	2021-10-05	2019-12-18	2.98	3.06	—	3.1	0.009	0.99	0.0	0.07	18.71	0.01	1.220	9.37	1.42	7.9	92.1	0.0	-3.92	0.71	0.79	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75591	6849	99	0	402	651	0	logfile
✘	6KMX	0727	2021-10-04	2019-08-01	2.41	2.47	—	2.4	0.024	2.30	0.0	0.08	19.63	0.02	1.209	6.49	2.13	3.1	96.8	0.1	-4.21	0.75	0.87	4.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65112	5919	72	0	363	636	0	logfile
✘	6KMW	0726	2021-10-04	2019-08-01	2.35	2.41	—	2.4	0.026	2.46	0.0	0.08	20.20	0.02	1.212	6.36	3.70	4.3	95.6	0.1	-4.06	0.77	0.85	4.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64083	5739	63	0	366	627	0	logfile
✘	6KAC	9955	2021-10-05	2019-06-21	2.7	2.84	—	2.8	0.011	1.48	0.0	0.07	15.51	0.02	1.198	8.34	0.64	4.9	95.0	0.1	-4.64	0.72	0.84	4.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77947	7858	126	0	318	595	0	logfile
✔	7N06	24101	2021-10-04	2021-05-25	2.2	2.33	—	2.2	0.007	0.63	0.0	0.05	14.55	0.00	2.096	3.28	2.10	2.5	97.4	0.1	-1.80	0.83	0.88	7.00	2.2	0.003	0.53	0.0	0.05	16.52	0.00	2.041	3.62	0.97	1.4	98.6	0.0	0.45	1.12	0.84	0.89	6.24	17223	2082	21	18	0	555	0	logfile

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