Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WYK	21967	2022-11-29	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.004	0.82	0.0	0.04	16.48	0.00	2.158	11.62	0.31	2.7	97.3	0.0	1.72	0.84	0.62	0.78	—	3083	415	1	0	0	0	0	logfile
✔	6VPS	21316	2022-11-29	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.004	0.53	0.0	0.03	20.06	0.00	2.403	4.27	0.98	6.9	93.1	0.0	-3.78	1.19	0.48	0.88	6.47	2736	279	9	0	0	0	0	logfile
✔	6Z3T	11064	2022-11-29	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.84	1.0	0.07	18.57	0.01	2.284	6.72	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.003	1.12	0.0	0.04	19.79	0.00	2.256	13.72	2.14	7.7	92.3	0.0	-1.72	0.92	0.21	0.66	1.55	3608	441	4	0	21	0	0	logfile
✔	7BP3	30143	2022-11-29	2020-03-21	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6080	788	2	0	0	0	0	logfile
✔	6BNP	7116	2022-11-29	2017-11-17	4.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56792	7160	22	0	16	0	0	logfile
✘	5A7U	3079	2022-11-29	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	30.77	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	6MRT	9212	2022-11-29	2018-10-15	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26868	3420	12	0	0	0	0	logfile
✔	6WM0	21846	2022-11-29	2020-04-20	3.52	3.75	—	3.7	0.003	0.59	0.0	0.04	14.11	0.00	2.281	6.43	0.00	2.6	97.4	0.0	-0.89	0.74	0.81	2.63	3.7	0.003	0.64	0.0	0.04	16.30	0.00	2.226	7.39	0.47	3.0	97.0	0.0	3.21	2.37	0.73	0.81	2.04	4105	510	3	0	5	0	0	logfile
✔	6XPD	22285	2022-11-29	2020-07-08	3.8	3.62	—	3.7	0.007	0.77	0.0	0.04	14.37	0.00	1.461	13.89	0.20	9.4	90.6	0.0	-3.83	0.60	0.85	1.65	3.6	0.004	0.74	0.0	0.04	16.82	0.00	1.978	10.69	0.78	5.1	94.9	0.0	1.30	1.38	0.60	0.83	2.30	4622	606	4	0	4	0	0	logfile
✘	6YV1	10940	2022-11-29	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.76	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✔	7KNT	22962	2022-11-29	2020-11-06	3.15	4.00	3.32	3.7	0.004	0.75	0.0	0.05	14.56	0.00	2.116	11.65	0.74	3.6	96.4	0.0	-0.48	0.58	0.75	1.64	3.7	0.003	0.71	0.0	0.04	16.05	0.00	2.229	12.73	0.25	2.7	97.3	0.0	0.57	0.49	0.57	0.75	0.28	3716	455	2	0	0	0	0	logfile
✔	7KNU	22963	2022-11-29	2020-11-06	3.49	4.38	3.61	4.1	0.003	0.64	0.0	0.04	14.11	0.01	2.141	9.64	0.00	4.0	96.0	0.0	-1.59	0.59	0.76	1.17	4.1	0.003	0.70	0.0	0.04	16.16	0.00	2.174	14.14	0.00	4.0	96.0	0.0	-0.39	0.58	0.59	0.77	0.52	3809	467	3	0	0	0	0	logfile
✔	6UKN	20807	2022-11-29	2019-10-05	3.65	3.85	—	3.8	0.005	0.78	0.0	0.05	14.79	0.01	2.280	4.10	0.47	7.7	92.3	0.0	-2.59	0.70	0.82	2.20	3.9	0.003	0.75	0.0	0.05	16.57	0.00	2.206	8.57	0.93	7.5	92.5	0.0	0.32	1.29	0.69	0.81	1.16	4109	536	4	0	8	0	0	logfile
✔	6WiK	21684	2022-11-29	2020-04-10	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6077	859	3	0	0	0	0	logfile
✔	6LZ0	30020	2022-11-29	2020-02-16	3.3	4.24	—	4.2	0.008	1.17	10.0	0.09	15.05	0.01	2.126	17.56	5.25	11.1	88.7	0.2	-4.02	0.46	0.61	1.68	4.2	0.003	0.79	0.0	0.04	16.17	0.01	2.163	9.24	0.31	6.2	93.8	0.0	-0.24	1.27	0.41	0.67	1.61	4006	591	3	0	1	0	0	logfile
✔	7CWo	30485	2022-11-29	2020-08-29	3.9	4.25	—	4.1	0.007	1.04	0.0	0.06	9.37	0.01	2.262	9.56	0.28	8.4	91.6	0.0	-3.72	0.58	0.74	2.31	4.1	0.005	0.78	0.0	0.05	14.28	0.00	2.126	21.79	0.28	8.2	91.8	0.0	-2.11	1.72	0.59	0.75	2.34	3254	422	3	0	0	0	0	logfile
✔	6M49	30074	2022-11-29	2020-03-06	3.7	4.45	—	4.4	0.008	0.85	0.0	0.05	14.32	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.84	0.0	0.04	16.18	0.00	2.192	10.57	0.66	2.9	97.1	0.0	1.84	3.61	0.48	0.73	1.18	3098	420	3	0	1	0	0	logfile
✔	6LYY	30019	2022-11-29	2020-02-16	3.2	3.40	—	3.9	0.010	1.16	9.0	0.10	13.41	0.01	2.152	14.72	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.8	0.003	0.73	0.0	0.04	15.49	0.00	2.267	9.94	0.60	4.6	95.4	0.0	0.46	1.24	0.46	0.66	2.02	4104	597	3	0	1	0	0	logfile
✔	6ZPG	11338	2022-11-29	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	6.9	0.003	0.83	0.0	0.04	15.55	0.00	2.211	18.10	0.00	7.2	92.8	0.0	0.34	1.95	0.65	0.63	—	3808	463	1	0	0	0	0	logfile
✔	6X0U	21984	2022-11-29	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.69	0.0	0.03	17.56	0.00	2.197	6.86	0.29	2.9	97.1	0.0	1.58	0.81	0.27	0.78	2.25	3091	398	4	0	0	0	0	logfile

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