Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P8W	13256	2022-04-06	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.39	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.62	0.0	0.04	15.61	0.00	2.221	3.19	0.46	2.9	97.1	0.0	0.56	1.15	0.86	0.91	6.13	17668	2008	12	0	8	1110	0	logfile
✔	5K12	8194	2022-04-05	2016-05-17	1.8	2.40	—	2.8	0.008	0.97	0.0	0.06	10.27	0.01	2.051	19.79	0.82	3.8	96.2	0.0	-2.53	0.66	0.74	5.80	2.8	0.010	1.13	2.0	0.04	15.20	0.00	1.443	13.32	0.20	1.8	98.2	0.0	1.71	1.05	0.71	0.89	3.78	14856	1764	12	0	0	1086	0	logfile
✘	5XNL	6741	2022-04-09	2017-05-23	2.7	2.75	—	2.8	0.013	1.36	0.0	0.07	15.73	0.02	1.207	10.15	0.08	2.1	97.9	0.0	-3.12	0.55	0.78	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98986	9364	136	0	490	1076	0	logfile
✔	7M4Y	23670	2022-04-09	2021-03-22	2.5	1.72	—	1.5	0.008	0.60	2.0	0.05	16.30	0.02	1.783	3.46	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.005	0.79	0.0	0.04	16.55	0.01	1.670	4.70	3.79	3.1	96.7	0.1	0.33	0.30	0.79	0.77	3.89	139817	5511	80	4453	200	1044	0	logfile
✘	6AZ3	7025	2022-04-07	2017-09-09	2.5	3.08	—	3.1	0.012	1.23	0.0	0.06	16.44	0.03	1.349	4.52	0.96	6.4	93.4	0.2	-4.53	0.54	0.78	5.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126561	6390	91	3507	44	1019	0	logfile
✘	7A5V	11657	2022-04-06	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	13.54	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21155	2275	30	0	85	1015	0	logfile
✔	5WE4	8814	2022-04-16	2017-07-07	3.1	3.04	3.02	3.0	0.008	1.16	3.0	0.10	17.51	0.02	1.575	3.75	3.52	9.8	87.9	2.3	-4.03	0.78	0.81	2.62	3.0	0.009	0.94	0.0	0.05	17.15	0.01	0.977	12.67	0.99	9.2	90.2	0.6	-2.13	3.97	0.83	0.82	2.48	155067	6324	117	4802	1620	996	0	logfile
✔	6ZGL	11210	2022-04-05	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.56	0.0	0.04	15.75	0.00	2.118	4.55	1.00	0.6	99.4	0.0	3.59	0.75	0.76	0.83	7.07	15760	1848	24	0	0	964	0	logfile
✔	6TSK	10564	2022-04-08	2019-12-20	2.3	2.36	—	2.3	0.012	1.54	24.0	0.11	16.57	0.02	1.535	1.57	2.42	2.9	97.0	0.1	-1.00	0.84	0.94	7.33	2.3	0.003	0.63	0.0	0.05	17.01	0.00	1.964	3.03	1.73	2.5	97.5	0.0	0.43	0.82	0.81	0.91	6.45	33632	4060	12	0	8	964	0	logfile
✔	7DD9	30650	2022-04-08	2020-10-28	2.4	2.49	2.37	2.4	0.007	0.71	0.0	0.05	15.88	0.00	1.932	8.69	1.93	7.1	92.9	0.0	-1.19	0.79	0.87	4.70	2.4	0.004	0.64	0.0	0.05	16.22	0.00	1.945	9.39	2.10	6.2	93.8	0.0	-0.98	0.22	0.80	0.88	4.84	37149	4516	12	0	12	949	0	logfile
✔	7oLC	12976	2022-04-17	2021-05-19	2.9	3.43	—	3.2	0.003	0.45	0.0	0.03	14.06	0.01	1.848	4.35	0.04	4.4	95.6	0.0	-1.10	0.78	0.86	3.30	3.2	0.006	0.65	0.0	0.04	15.41	0.01	1.691	6.73	2.43	5.5	94.5	0.0	-0.70	0.32	0.81	0.88	2.82	207344	11862	127	5231	579	945	0	logfile
✔	6Z0V	11024	2022-04-09	2020-05-11	2.6	2.68	—	2.6	0.010	0.87	0.0	0.06	13.09	0.01	1.818	9.89	0.27	5.3	94.7	0.0	-2.69	0.73	0.87	5.10	2.7	0.003	0.60	0.0	0.04	14.73	0.00	2.032	7.66	0.53	2.5	97.5	0.0	0.35	1.23	0.76	0.88	4.39	42972	5424	36	0	12	936	0	logfile
✔	7oJ5	12938	2022-04-08	2021-05-13	2.4	2.43	—	2.4	0.002	0.53	0.0	0.04	16.61	0.00	2.177	1.81	1.95	1.6	98.4	0.0	-0.94	0.76	0.87	3.97	2.4	0.004	0.83	0.0	0.05	16.82	0.00	2.124	3.47	1.30	2.7	97.3	0.0	0.60	0.34	0.79	0.89	4.75	35323	4416	72	0	48	931	0	logfile
✔	5WDT	8813	2022-04-16	2017-07-06	3.0	3.20	3.19	3.2	0.008	1.15	2.0	0.10	17.68	0.02	1.527	4.72	3.29	9.7	88.1	2.3	-4.08	0.77	0.80	2.46	3.1	0.009	0.93	0.0	0.05	17.21	0.01	1.642	11.94	4.67	9.6	89.9	0.6	-1.85	3.20	0.85	0.86	2.43	155275	6324	125	4802	1910	920	0	logfile
✔	6YBQ	10771	2022-04-08	2020-03-17	1.96	2.06	—	2.0	0.039	1.58	0.0	0.05	15.05	0.01	1.550	4.58	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	2.0	0.003	0.72	0.0	0.05	15.91	0.00	2.108	4.57	0.41	2.4	97.6	0.0	0.00	0.46	0.84	0.89	6.08	34092	4289	36	0	12	871	0	logfile
✔	7B5K	12035	2022-04-12	2020-12-03	2.9	2.60	2.95	2.8	0.006	0.90	0.0	0.05	14.17	0.02	1.504	11.12	0.45	3.9	95.9	0.1	-3.45	0.76	0.80	3.32	2.8	0.005	0.75	1.0	0.05	14.92	0.01	1.419	6.73	2.41	4.3	95.6	0.0	-0.49	0.42	0.77	0.82	2.86	148576	5684	80	4790	362	854	0	logfile
✔	3JCJ	6559	2022-04-12	2015-12-18	3.7	3.96	—	3.8	0.007	1.05	18.0	0.10	12.45	0.01	1.344	2.06	0.39	9.2	89.0	1.8	-3.55	0.80	0.75	1.31	3.8	0.004	0.70	0.0	0.04	15.33	0.01	1.817	18.09	0.79	11.5	87.6	0.9	-2.50	2.01	0.83	0.85	1.24	148347	6249	82	4594	197	837	0	logfile
✘	7M4V	23667	2022-04-08	2021-03-22	2.54	2.36	—	2.4	0.002	0.51	0.0	0.03	14.92	0.00	1.183	2.89	0.00	2.3	97.6	0.2	0.82	0.71	0.79	4.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	86404	3128	48	2847	162	802	0	logfile
✔	7o1C	12695	2022-04-12	2021-03-29	2.6	3.02	2.70	2.4	0.018	1.91	0.0	0.06	14.39	0.02	0.055	6.78	0.04	5.1	94.8	0.1	-1.96	0.80	0.83	3.37	2.3	0.005	0.71	0.0	0.04	14.72	0.01	0.867	8.21	2.44	4.4	95.5	0.1	-0.43	1.00	0.81	0.84	2.98	148175	6042	76	4638	489	800	0	logfile
✔	7M4W	23668	2022-04-08	2021-03-22	2.55	1.74	—	1.6	0.008	0.57	0.0	0.05	15.01	0.01	1.760	3.08	0.02	2.8	97.0	0.2	1.38	0.77	0.74	3.81	1.5	0.008	0.91	0.0	0.05	16.24	0.01	1.619	4.94	2.38	3.6	96.3	0.1	0.19	0.91	0.80	0.78	3.76	137923	5518	76	4373	195	797	0	logfile

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