Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	3JCJ	6559	2023-08-31	2015-12-18	3.7	3.96	—	3.8	0.007	1.05	18.0	0.10	12.45	0.01	1.344	2.06	0.39	9.2	89.0	1.8	-3.55	0.80	0.75	1.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	148347	6249	82	4594	197	837	0	logfile
✔	7XMU	33305	2023-08-14	2022-04-26	2.3	2.51	2.33	2.5	0.016	0.90	0.0	0.05	17.56	0.04	1.897	4.23	1.57	2.6	97.4	0.0	-0.10	0.75	0.87	4.86	2.5	0.003	1.81	0.0	0.04	17.21	0.00	1.872	4.69	0.46	2.6	97.4	0.0	0.29	1.11	0.77	0.88	4.57	15294	1842	18	0	36	822	0	logfile
✔	7XMV	33306	2023-08-14	2022-04-27	2.6	2.75	2.70	2.8	0.014	0.89	0.0	0.05	15.79	0.03	1.853	5.35	1.18	3.6	96.4	0.0	-0.87	0.72	0.86	4.88	2.8	0.004	1.24	0.0	0.05	17.46	0.00	1.861	4.67	0.85	3.3	96.7	0.0	-0.01	1.13	0.74	0.87	4.48	15228	1842	18	0	30	810	0	logfile
✔	7M4V	23667	2023-08-21	2021-03-22	2.54	2.36	—	2.4	0.006	0.60	0.0	0.03	15.18	0.02	1.808	2.89	0.00	2.3	97.6	0.2	0.82	0.71	0.79	4.43	2.4	0.004	0.73	0.0	0.04	15.97	0.01	1.766	3.92	1.54	2.9	97.0	0.1	0.02	1.72	0.74	0.87	4.35	86404	3128	48	2847	162	802	0	logfile
✘	7o1C	12695	2023-08-31	2021-03-29	2.6	3.02	2.70	2.4	0.018	1.90	0.0	0.06	14.38	0.02	0.055	6.76	0.04	5.1	94.8	0.1	-1.96	0.80	0.83	3.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	148175	6042	76	4638	489	800	0	logfile
✔	7o19	12693	2023-08-27	2021-03-29	2.9	3.19	2.93	2.6	0.016	1.84	0.0	0.05	14.09	0.02	1.430	6.55	0.04	3.7	96.2	0.1	-1.50	0.82	0.86	3.50	2.6	0.005	0.66	0.0	0.04	14.27	0.01	1.761	7.39	1.59	3.6	96.3	0.1	0.08	0.37	0.86	0.88	3.40	145019	5694	74	4635	173	793	0	logfile
✔	5A1A	2984	2023-08-22	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.15	0.01	0.020	14.13	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.003	0.66	0.0	0.04	17.63	0.00	1.961	10.92	2.75	2.3	97.6	0.1	-0.56	1.09	0.53	0.79	3.86	33696	4088	12	0	20	776	0	logfile
✔	7N8H	24236	2023-08-22	2021-06-14	2.3	2.39	2.37	2.4	0.012	1.26	0.0	0.08	11.08	0.01	2.409	1.69	0.00	1.7	98.3	0.0	0.64	0.73	0.78	4.69	2.4	0.003	0.63	0.0	0.05	14.55	0.00	1.989	4.07	1.06	1.7	98.3	0.0	0.87	0.98	0.74	0.79	4.61	32921	4356	36	0	60	771	0	logfile
✘	8DBY	27317	2023-08-14	2022-06-15	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16794	1998	12	0	8	770	0	logfile
✘	7VB7	31874	2023-08-20	2021-08-30	2.4	2.41	—	2.4	0.007	0.77	1.0	0.05	16.42	0.01	1.988	6.35	1.28	3.0	96.9	0.1	0.48	0.76	0.90	5.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29279	3543	45	0	19	736	0	logfile
✔	7VYN	32210	2023-08-20	2021-11-14	2.4	2.47	—	2.5	0.008	0.78	1.0	0.05	16.97	0.01	2.198	5.50	1.15	3.5	96.5	0.1	0.41	0.77	0.91	5.04	2.4	0.003	0.57	0.0	0.04	17.05	0.00	2.157	4.55	1.68	3.5	96.5	0.1	0.59	0.60	0.76	0.92	5.01	29298	3543	45	0	20	735	0	logfile
✔	7VBZ	31886	2023-08-20	2021-09-01	2.4	2.48	—	2.5	0.009	0.93	6.0	0.06	16.44	0.01	1.907	11.30	2.07	3.7	96.0	0.3	-0.05	0.74	0.89	4.87	2.5	0.003	0.56	0.0	0.04	17.07	0.00	2.104	5.66	1.64	3.0	96.9	0.1	0.42	0.90	0.75	0.91	5.12	29292	3543	45	0	19	730	0	logfile
✔	8PHo	17669	2023-08-21	2023-06-20	2.34	2.07	2.33	2.2	0.005	0.77	0.0	0.06	13.64	0.01	2.128	1.78	0.00	1.0	99.0	0.0	-0.02	0.73	0.85	3.99	2.2	0.002	0.50	0.0	0.04	16.96	0.00	2.202	2.96	0.78	0.4	99.6	0.0	1.21	0.50	0.72	0.85	4.41	32172	3804	12	0	0	720	0	logfile
✘	7Pi5	13430	2023-08-18	2021-08-19	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76287	7455	123	0	343	718	0	logfile
✔	7VBN	31883	2023-08-20	2021-08-31	2.4	2.48	—	2.5	0.006	0.75	2.0	0.05	16.47	0.01	2.002	8.61	1.39	3.1	96.8	0.1	0.39	0.78	0.89	4.54	2.5	0.003	0.58	0.0	0.04	16.95	0.00	2.109	5.90	2.12	3.2	96.7	0.1	0.33	0.81	0.78	0.91	4.61	29042	3522	44	0	17	713	0	logfile
✔	7VZ1	32218	2023-08-20	2021-11-15	2.5	2.55	—	2.5	0.008	0.78	0.0	0.05	17.15	0.01	2.201	6.34	1.17	3.3	96.6	0.1	0.11	0.79	0.91	4.60	2.5	0.003	0.54	0.0	0.04	17.22	0.00	2.155	5.08	1.84	3.4	96.6	0.0	0.37	0.25	0.78	0.92	4.45	28737	3488	44	0	17	712	0	logfile
✔	7VWJ	32154	2023-08-20	2021-11-10	2.6	2.67	—	2.7	0.007	0.72	0.0	0.04	14.07	0.01	1.965	7.48	0.13	2.9	97.0	0.0	0.65	0.77	0.89	4.69	2.6	0.003	0.54	0.0	0.04	16.51	0.00	2.128	6.78	1.47	3.3	96.7	0.0	0.39	0.32	0.77	0.91	4.33	28748	3488	44	0	17	711	0	logfile
✔	7VQo	32091	2023-08-24	2021-10-20	2.19	3.23	2.29	3.0	0.008	0.75	0.0	0.05	17.42	0.00	1.865	12.17	3.25	9.3	90.7	0.0	-1.44	0.58	0.80	3.45	3.0	0.008	0.73	0.0	0.05	17.56	0.00	1.905	13.04	2.61	8.3	91.7	0.0	-0.90	0.30	0.58	0.80	3.32	38640	4720	12	0	4	688	0	logfile
✘	6TRC	10558	2023-08-18	2019-12-18	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75591	6849	99	0	402	651	0	logfile
✘	6KMX	0727	2023-08-12	2019-08-01	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65112	5919	72	0	363	636	0	logfile

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