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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8CSW | 26973 | 2023-12-07 | 2022-05-13 | 2.5 | 2.22 | 2.46 | 2.3 | 0.007 | 0.86 | 0.0 | 0.06 | 14.46 | 0.01 | 2.219 | 5.03 | 2.33 | 1.2 | 98.8 | 0.0 | 0.83 | 0.64 | 0.88 | 6.02 | 2.3 | 0.002 | 0.52 | 0.0 | 0.04 | 16.70 | 0.00 | 2.152 | 4.25 | 1.25 | 1.4 | 98.6 | 0.0 | 1.11 | 0.50 | 0.62 | 0.88 | 5.56 | 5332 | 657 | 1 | 0 | 0 | 165 | 0 | logfile |
✔ | 6S8J | 10124 | 2023-12-09 | 2019-07-10 | 2.91 | 3.06 | 3.00 | 3.0 | 0.006 | 1.00 | 0.0 | 0.06 | 13.16 | 0.01 | 2.185 | 7.67 | 3.27 | 3.3 | 96.5 | 0.2 | -0.67 | 0.74 | 0.84 | 4.26 | 3.0 | 0.004 | 0.72 | 0.0 | 0.05 | 15.71 | 0.00 | 2.175 | 6.08 | 3.82 | 3.7 | 96.3 | 0.0 | -0.66 | 1.01 | 0.77 | 0.88 | 3.72 | 12391 | 1584 | 27 | 0 | 6 | 163 | 0 | logfile |
✔ | 8P6Y | 17511 | 2023-12-07 | 2023-05-30 | 1.9 | 1.73 | 1.95 | 1.9 | 0.005 | 0.60 | 0.0 | 0.04 | 17.03 | 0.00 | 2.148 | 3.62 | 0.36 | 1.0 | 98.9 | 0.2 | 1.99 | 0.68 | 0.84 | 6.33 | 1.9 | 0.003 | 0.61 | 0.0 | 0.04 | 17.07 | 0.00 | 2.132 | 4.41 | 1.26 | 1.5 | 98.4 | 0.2 | 1.70 | 0.21 | 0.68 | 0.85 | 6.44 | 5266 | 630 | 7 | 0 | 3 | 158 | 0 | logfile |
✔ | 7P92 | 13258 | 2023-12-09 | 2021-07-23 | 2.7 | 2.17 | 2.57 | 2.3 | 0.003 | 0.56 | 1.0 | 0.04 | 14.12 | 0.00 | 1.985 | 4.69 | 0.18 | 3.7 | 96.3 | 0.0 | 0.23 | 0.52 | 0.78 | 3.78 | 2.4 | 0.002 | 0.52 | 0.0 | 0.04 | 17.07 | 0.00 | 2.196 | 5.77 | 1.20 | 2.7 | 97.3 | 0.0 | 0.75 | 1.88 | 0.51 | 0.78 | 3.47 | 10436 | 1322 | 9 | 0 | 12 | 157 | 0 | logfile |
✔ | 7ZZ6 | 15036 | 2023-12-08 | 2022-05-25 | 2.15 | 2.39 | 2.12 | 2.1 | 0.006 | 0.68 | 0.0 | 0.04 | 17.30 | 0.00 | 1.385 | 8.71 | 3.48 | 2.9 | 97.1 | 0.0 | 0.64 | 0.91 | 0.90 | 4.87 | 2.1 | 0.004 | 0.61 | 0.0 | 0.04 | 17.09 | 0.00 | 1.999 | 8.27 | 3.14 | 3.0 | 97.0 | 0.0 | 0.69 | 0.24 | 0.93 | 0.92 | 4.82 | 8257 | 1017 | 6 | 0 | 6 | 157 | 0 | logfile |
✔ | 7EFC | 31083 | 2023-12-07 | 2021-03-21 | 1.7 | 1.76 | 1.76 | 1.9 | 0.032 | 3.16 | 16.0 | 0.09 | 14.88 | 0.02 | 0.001 | 2.15 | 2.15 | 2.5 | 96.6 | 0.8 | -0.84 | 0.75 | 0.84 | 6.42 | 1.9 | 0.004 | 0.75 | 0.0 | 0.05 | 14.46 | 0.00 | 1.841 | 7.51 | 1.08 | 3.2 | 96.8 | 0.0 | 0.63 | 0.92 | 0.80 | 0.85 | 6.49 | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✘ | 7EFD | 31084 | 2023-12-07 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.32 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✘ | 6L4U | 0835 | 2023-12-09 | 2019-10-21 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62199 | 5075 | 72 | 0 | 557 | 156 | 0 | logfile |
✔ | 8CSX | 26974 | 2023-12-08 | 2022-05-13 | 2.4 | 2.08 | 2.44 | 2.1 | 0.006 | 0.79 | 1.0 | 0.05 | 15.46 | 0.01 | 2.208 | 4.92 | 3.86 | 1.7 | 98.2 | 0.1 | 1.76 | 0.69 | 0.88 | 5.16 | 2.1 | 0.005 | 0.64 | 0.0 | 0.04 | 15.22 | 0.01 | 2.052 | 6.64 | 1.93 | 1.9 | 98.1 | 0.0 | 1.96 | 0.37 | 0.69 | 0.88 | 4.87 | 9116 | 1158 | 8 | 0 | 4 | 150 | 0 | logfile |
✔ | 7U5K | 26353 | 2023-12-10 | 2022-03-02 | 2.78 | 2.62 | 2.83 | 2.7 | 0.003 | 0.64 | 0.0 | 0.04 | 17.75 | 0.00 | 1.465 | 8.53 | 2.48 | 1.9 | 98.1 | 0.0 | 0.18 | 0.61 | 0.77 | 3.89 | 2.7 | 0.003 | 0.62 | 0.0 | 0.04 | 17.98 | 0.00 | 2.022 | 10.23 | 3.09 | 2.5 | 97.5 | 0.0 | 0.29 | 0.36 | 0.72 | 0.83 | 3.85 | 15316 | 1972 | 8 | 0 | 0 | 148 | 0 | logfile |
✘ | 8H87 | 34531 | 2023-12-08 | 2022-10-21 | 2.53 | 2.73 | 2.50 | 2.7 | 0.011 | 1.55 | 0.0 | 0.08 | 18.83 | 0.02 | 2.300 | 4.49 | 0.91 | 2.3 | 97.7 | 0.0 | -1.32 | 0.58 | 0.79 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7083 | 777 | 6 | 0 | 48 | 147 | 0 | logfile |
✔ | 6ZHX | 11220 | 2023-12-09 | 2020-06-24 | 2.5 | 3.01 | 2.43 | 2.7 | 0.005 | 0.92 | 0.0 | 0.06 | 26.79 | 0.01 | 2.203 | 2.63 | 0.46 | 1.0 | 99.0 | 0.0 | 0.63 | 0.88 | 0.90 | 5.80 | 2.7 | 0.004 | 0.60 | 0.0 | 0.03 | 28.37 | 0.00 | 2.100 | 5.18 | 0.77 | 0.9 | 99.1 | 0.0 | 2.73 | 0.44 | 0.89 | 0.92 | 4.61 | 12313 | 784 | 22 | 290 | 0 | 146 | 0 | logfile |
✘ | 7ATE | 11921 | 2023-12-08 | 2020-10-30 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9056 | 1098 | 10 | 0 | 9 | 145 | 0 | logfile |
✔ | 3JCS | 6583 | 2023-12-09 | 2016-01-21 | 2.8 | 3.07 | — | 3.0 | 0.009 | 0.98 | 1.0 | 0.05 | 24.41 | 0.03 | 1.093 | 24.89 | 1.41 | 11.8 | 88.0 | 0.2 | -5.35 | 0.72 | 0.78 | 3.98 | 3.0 | 0.007 | 0.88 | 0.0 | 0.04 | 24.23 | 0.01 | 1.866 | 17.67 | 3.28 | 9.9 | 90.0 | 0.1 | -2.48 | 0.54 | 0.70 | 0.80 | 2.75 | 117257 | 5847 | 74 | 3420 | 109 | 144 | 0 | logfile |
✔ | 6TU4 | 10587 | 2023-12-10 | 2020-01-02 | 2.6 | 2.70 | 2.54 | 2.7 | 0.023 | 2.09 | 0.0 | 0.06 | 17.77 | 0.00 | 2.007 | 3.51 | 3.10 | 1.5 | 98.5 | 0.0 | -1.72 | 0.66 | 0.87 | 4.94 | 2.7 | 0.003 | 1.23 | 0.0 | 0.05 | 18.54 | 0.00 | 1.896 | 5.82 | 2.40 | 2.0 | 98.0 | 0.0 | 0.88 | 0.37 | 0.67 | 0.89 | 4.17 | 15690 | 1860 | 15 | 0 | 15 | 140 | 0 | logfile |
✘ | 6TM2 | 10517 | 2023-12-08 | 2019-12-03 | 2.95 | 3.12 | — | 3.1 | 0.008 | 1.01 | 0.0 | 0.06 | 11.48 | 0.01 | 2.181 | 3.02 | 0.10 | 11.3 | 88.7 | 0.0 | -4.14 | 0.44 | 0.47 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55254 | 7230 | 60 | 0 | 54 | 138 | 0 | logfile |
✔ | 8P6V | 17508 | 2023-12-07 | 2023-05-30 | 1.9 | 1.76 | 1.97 | 1.9 | 0.005 | 0.62 | 0.0 | 0.04 | 16.30 | 0.00 | 2.221 | 5.67 | 1.26 | 1.8 | 98.1 | 0.2 | 1.53 | 0.64 | 0.77 | 5.52 | 1.9 | 0.004 | 0.63 | 0.0 | 0.04 | 16.87 | 0.00 | 2.112 | 6.45 | 2.17 | 1.6 | 98.2 | 0.2 | 1.22 | 0.75 | 0.65 | 0.78 | 5.55 | 5243 | 630 | 7 | 0 | 2 | 138 | 0 | logfile |
✔ | 6X19 | 21993 | 2023-12-09 | 2020-05-18 | 2.1 | 2.20 | 2.11 | 2.1 | 0.009 | 1.29 | 6.0 | 0.08 | 14.32 | 0.01 | 2.134 | 12.92 | 1.01 | 2.7 | 97.3 | 0.1 | -1.61 | 0.73 | 0.84 | 4.93 | 2.2 | 0.003 | 0.75 | 0.0 | 0.04 | 16.73 | 0.00 | 2.129 | 6.39 | 1.10 | 2.3 | 97.7 | 0.0 | 1.19 | 1.31 | 0.72 | 0.88 | 4.55 | 10277 | 1258 | 9 | 0 | 1 | 136 | 0 | logfile |
✔ | 8QEE | 18353 | 2023-12-10 | 2023-08-31 | 2.43 | 2.62 | 2.45 | 2.7 | 0.002 | 0.45 | 0.0 | 0.04 | 17.85 | 0.00 | 2.021 | 4.01 | 2.15 | 1.7 | 98.3 | 0.0 | 2.41 | 0.61 | 0.81 | 4.25 | 2.7 | 0.003 | 0.51 | 0.0 | 0.04 | 16.98 | 0.00 | 1.999 | 6.01 | 2.42 | 1.7 | 98.2 | 0.1 | 2.21 | 0.71 | 0.62 | 0.81 | 3.62 | 13746 | 823 | 3 | 0 | 6 | 130 | 6889 | logfile |
✔ | 6EBL | 9025 | 2023-12-10 | 2018-08-06 | 3.0 | 3.15 | — | 3.1 | 0.011 | 1.41 | 0.0 | 0.08 | 11.60 | 0.01 | 2.034 | 8.10 | 0.21 | 2.7 | 97.3 | 0.0 | -4.53 | 0.69 | 0.87 | 4.42 | 3.1 | 0.003 | 0.64 | 0.0 | 0.04 | 15.87 | 0.00 | 2.092 | 6.54 | 1.85 | 2.8 | 97.2 | 0.0 | 0.65 | 0.68 | 0.73 | 0.89 | 3.81 | 13952 | 1708 | 20 | 0 | 4 | 128 | 0 | logfile |