Table showing results for July 2023

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7XY9	33514	2023-07-06	2022-06-01	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	0.43	—	—	5.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10962	1376	12	0	12	574	0	logfile
✘	7QiX	14002	2023-07-14	2021-12-16	2.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	83517	2911	42	1110	81	570	35777	logfile
✔	8A2Z	15109	2023-07-07	2022-06-06	2.15	2.27	2.11	2.2	0.004	0.58	0.0	0.04	11.91	0.00	2.190	1.81	0.00	2.1	97.7	0.3	-1.13	0.74	0.87	6.56	2.2	0.003	0.59	0.0	0.04	15.50	0.00	2.041	4.24	0.52	1.7	98.3	0.0	1.11	1.46	0.74	0.89	5.98	15060	1830	15	0	10	570	0	logfile
✔	8A2T	15106	2023-07-07	2022-06-06	2.24	2.35	2.17	2.3	0.004	0.56	0.0	0.04	13.20	0.00	1.880	2.50	0.32	1.9	98.1	0.0	-1.62	0.71	0.87	5.89	2.3	0.003	0.61	0.0	0.04	16.32	0.00	1.898	3.79	0.52	1.1	98.9	0.0	1.10	0.81	0.74	0.90	5.29	15046	1830	15	0	10	556	0	logfile
✔	7N06	24101	2023-07-08	2021-05-25	2.2	2.34	—	2.2	0.007	0.63	0.0	0.05	14.55	0.00	2.096	3.28	2.10	2.5	97.4	0.1	-1.80	0.83	0.88	7.00	2.2	0.003	0.52	0.0	0.05	16.56	0.00	2.105	3.80	0.92	1.5	98.5	0.0	0.44	1.11	0.84	0.90	6.25	17223	2082	21	18	0	555	0	logfile
✔	7M4X	23669	2023-07-15	2021-03-22	2.66	1.75	—	1.6	0.006	0.56	0.0	0.03	15.11	0.01	1.789	3.62	0.00	2.5	97.4	0.1	1.32	0.77	0.73	3.46	1.6	0.004	0.72	0.0	0.04	16.10	0.01	1.684	5.41	2.69	3.2	96.7	0.1	0.26	0.35	0.79	0.76	3.35	139446	5528	73	4453	194	552	0	logfile
✔	7XXF	33501	2023-07-14	2022-05-30	2.24	2.16	2.23	2.2	0.023	2.96	0.0	0.05	21.41	0.02	2.014	7.34	1.31	2.8	97.2	0.0	1.59	0.77	0.88	5.31	2.2	0.003	1.46	0.0	0.04	18.67	0.00	1.986	7.47	1.02	2.8	97.2	0.0	2.26	0.89	0.77	0.90	4.60	29826	3004	120	0	98	538	0	logfile
✔	7oE0	12856	2023-07-20	2021-04-30	2.69	2.88	2.81	2.8	0.014	1.07	0.0	0.06	16.90	0.01	1.980	24.23	0.00	10.1	89.9	0.0	-2.59	0.77	0.72	2.51	2.8	0.003	0.62	0.0	0.03	16.48	0.00	2.045	15.70	2.42	8.6	91.4	0.0	-1.08	0.41	0.76	0.70	1.86	50296	2208	29	1510	0	530	0	logfile
✔	8A2Y	15108	2023-07-07	2022-06-06	2.15	2.21	2.10	2.2	0.005	0.61	0.0	0.05	13.42	0.00	2.177	2.39	0.64	1.9	98.1	0.0	-1.01	0.72	0.87	6.39	2.2	0.003	0.62	0.0	0.05	15.79	0.00	2.140	4.05	0.58	1.1	98.9	0.0	0.97	0.83	0.72	0.89	6.11	15078	1835	15	0	15	528	0	logfile
✔	6XZ7	10655	2023-07-16	2020-02-03	2.1	2.05	2.12	2.1	0.010	0.84	1.0	0.05	14.69	0.04	1.564	6.31	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	2.1	0.002	0.73	0.0	0.03	14.89	0.01	1.829	6.68	2.07	2.0	97.9	0.1	0.41	0.93	0.71	0.89	5.12	94915	3351	45	3169	179	528	0	logfile
✔	7o0X	12682	2023-07-04	2021-03-28	2.44	2.39	—	2.3	0.018	4.34	0.0	0.06	24.66	0.01	2.099	1.65	0.23	1.4	98.6	0.0	1.33	0.82	0.86	5.55	2.3	0.004	1.73	0.0	0.04	20.98	0.00	2.058	6.64	1.13	1.0	99.0	0.0	3.90	0.49	0.83	0.88	4.22	56446	5072	237	0	316	521	0	logfile
✔	8A2U	15107	2023-07-07	2022-06-06	2.21	2.31	2.16	2.3	0.004	0.63	0.0	0.04	13.27	0.00	2.173	2.75	0.65	2.5	97.5	0.0	-1.41	0.72	0.86	6.31	2.3	0.002	0.59	0.0	0.04	16.64	0.00	2.155	3.93	0.52	1.3	98.7	0.0	1.13	1.06	0.73	0.88	6.00	15022	1830	15	0	15	512	0	logfile
✔	7PCH	13320	2023-07-05	2021-08-03	2.89	3.82	2.93	3.4	0.012	1.54	0.0	0.10	13.62	0.01	2.343	0.97	0.55	3.7	96.3	0.0	1.22	0.89	0.83	3.70	3.4	0.004	0.64	0.0	0.04	14.40	0.00	2.170	6.27	0.55	0.8	99.2	0.0	2.33	1.58	0.91	0.89	3.66	10798	1254	16	0	4	510	0	logfile
✔	8BC3	15961	2023-07-08	2022-10-14	2.1	2.00	2.14	2.2	0.014	2.07	0.0	0.11	17.99	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.83	5.67	2.1	0.002	0.54	0.0	0.04	15.44	0.00	2.168	4.01	0.63	0.6	99.4	0.0	1.85	0.51	0.76	0.87	5.99	16880	2170	30	0	10	500	0	logfile
✔	7o0U	12679	2023-07-04	2021-03-27	2.35	2.42	—	2.3	0.018	4.37	0.0	0.06	24.75	0.01	2.121	1.73	0.41	1.2	98.8	0.0	1.39	0.83	0.86	5.52	2.3	0.003	1.70	0.0	0.03	21.23	0.00	1.834	7.34	1.15	0.9	99.1	0.0	4.12	2.04	0.84	0.89	4.24	55758	4972	236	0	320	491	0	logfile
✔	7o0V	12680	2023-07-04	2021-03-27	2.5	2.50	—	2.4	0.018	4.38	0.0	0.06	24.68	0.01	2.117	1.81	0.31	1.2	98.8	0.0	1.63	0.82	0.86	5.41	2.4	0.007	1.84	0.0	0.04	22.08	0.00	2.013	8.44	1.38	1.0	99.0	0.0	3.41	0.50	0.84	0.89	4.41	55475	4947	238	0	317	489	0	logfile
✔	8A2R	15104	2023-07-07	2022-06-06	2.17	2.31	2.13	2.2	0.005	0.67	0.0	0.04	13.67	0.00	1.880	2.75	0.65	2.5	97.5	0.0	-1.52	0.72	0.86	5.94	2.2	0.002	0.57	0.0	0.04	16.82	0.00	1.938	3.48	0.90	1.4	98.6	0.0	1.29	1.70	0.73	0.90	5.61	14990	1830	15	0	15	480	0	logfile
✔	7Z19	14445	2023-07-15	2022-02-24	2.57	3.23	2.64	3.0	0.005	0.62	0.0	0.04	13.36	0.00	2.000	7.08	0.28	2.6	97.4	0.0	1.13	0.78	0.88	4.29	3.0	0.003	0.50	0.0	0.04	14.96	0.00	2.007	7.14	0.39	2.4	97.6	0.0	1.51	0.31	0.77	0.88	4.34	34105	2174	21	0	6	477	16717	logfile
✘	7UMH	26601	2023-07-16	2022-04-07	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	140516	12747	124	0	798	461	0	logfile
✔	8BC2	15960	2023-07-08	2022-10-14	2.6	2.43	2.67	2.8	0.012	1.66	0.0	0.10	18.31	0.03	2.311	3.08	13.21	4.2	95.8	0.0	-4.52	0.75	0.84	4.09	2.7	0.003	0.56	0.0	0.04	16.80	0.00	2.053	4.98	1.26	1.4	98.6	0.0	1.88	1.05	0.76	0.83	4.52	16770	2180	20	0	0	460	0	logfile

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