Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iKA	35507	2023-04-25	2023-02-28	2.75	2.89	2.81	2.9	0.008	1.22	0.0	0.07	12.95	0.02	2.225	4.42	0.00	1.5	98.5	0.0	-0.45	0.82	0.88	4.57	2.9	0.005	0.55	0.0	0.04	16.79	0.00	2.145	3.77	1.06	1.4	98.6	0.0	1.61	1.50	0.82	0.90	4.07	122040	15900	60	0	0	0	0	logfile
✔	8iD9	35360	2023-04-20	2023-02-12	3.0	3.00	—	2.9	0.005	0.73	0.0	0.05	13.95	0.02	2.182	9.55	0.13	2.7	97.3	0.0	-0.21	0.88	0.84	3.28	2.9	0.005	0.65	0.0	0.04	14.91	0.00	2.166	6.84	1.56	4.0	96.0	0.0	0.29	1.80	0.89	0.87	3.28	7996	1095	5	0	1	0	0	logfile
✔	8iD8	35359	2023-04-20	2023-02-12	3.0	3.25	3.12	3.3	0.004	0.66	0.0	0.04	13.18	0.00	1.393	8.92	0.33	3.3	96.7	0.0	-0.43	0.67	0.78	2.54	3.3	0.003	0.60	0.0	0.04	15.71	0.00	2.175	7.16	2.77	3.0	97.0	0.0	0.47	0.41	0.62	0.78	2.33	8635	1137	6	0	1	0	0	logfile
✔	8iD6	35358	2023-04-21	2023-02-12	2.8	2.99	2.85	3.0	0.004	0.67	0.0	0.05	11.40	0.01	2.180	7.91	0.00	0.7	99.3	0.0	0.86	0.68	0.81	3.66	3.0	0.002	0.58	0.0	0.04	14.24	0.00	2.134	4.79	1.52	2.1	97.9	0.0	1.31	0.52	0.67	0.83	3.38	8727	1139	6	0	1	0	0	logfile
✔	8iD4	35357	2023-04-20	2023-02-12	3.1	3.26	3.09	3.2	0.004	0.73	1.0	0.05	12.92	0.01	2.217	8.68	0.22	3.7	96.1	0.2	-1.06	0.65	0.79	3.25	3.2	0.002	0.54	0.0	0.04	14.62	0.00	2.216	6.35	0.11	3.2	96.8	0.0	0.27	0.35	0.67	0.82	2.83	8665	1134	6	0	1	1	0	logfile
✔	8iD3	35356	2023-04-21	2023-02-12	3.1	3.38	3.17	3.3	0.005	0.87	0.0	0.05	14.38	0.01	2.199	8.84	0.76	3.9	96.1	0.0	-1.42	0.65	0.79	3.03	3.3	0.003	0.56	0.0	0.04	14.82	0.00	2.208	6.41	0.33	3.2	96.8	0.0	0.26	0.41	0.65	0.80	2.55	8742	1141	5	0	1	0	0	logfile
✔	8i6V	35208	2023-04-22	2023-01-29	3.06	2.71	2.98	2.9	0.004	0.57	0.0	0.04	15.26	0.00	2.114	5.15	0.28	3.2	96.6	0.2	2.38	0.61	0.81	2.61	3.0	0.003	0.54	0.0	0.04	16.37	0.00	2.116	4.99	0.21	2.9	97.1	0.0	2.27	0.34	0.62	0.84	2.73	13172	1594	10	0	6	4	0	logfile
✔	8i54	35191	2023-04-25	2023-01-24	3.95	4.70	4.01	4.1	0.013	1.03	0.0	0.05	18.00	0.01	2.207	13.04	0.98	12.8	86.8	0.4	-3.16	0.85	0.69	0.32	4.1	0.003	0.62	0.0	0.04	18.83	0.00	1.913	26.57	0.49	14.7	85.1	0.2	-3.14	0.57	0.86	0.72	0.61	19661	1113	4	67	0	0	9100	logfile
✔	8i1V	35123	2023-04-26	2023-01-13	2.6	3.00	2.59	3.0	0.005	0.62	0.0	0.04	13.20	0.00	2.058	7.77	0.04	3.2	96.8	0.0	-0.33	0.60	0.81	3.39	3.0	0.003	0.59	0.0	0.04	14.91	0.00	2.124	8.48	1.49	3.0	97.0	0.0	-0.02	0.54	0.61	0.89	3.11	23870	3127	14	0	0	0	0	logfile
✔	8i1T	35121	2023-04-26	2023-01-13	2.8	2.69	2.76	2.7	0.007	0.70	0.0	0.05	14.07	0.00	2.196	7.64	0.08	3.2	96.6	0.2	-1.01	0.58	0.87	4.08	2.7	0.002	0.55	0.0	0.04	15.55	0.00	2.181	7.49	1.30	2.5	97.3	0.2	-0.65	0.28	0.58	0.88	3.21	22939	3003	7	0	0	0	0	logfile
✔	8HW1	35080	2023-04-29	2022-12-28	3.13	3.07	2.93	3.2	0.028	2.49	0.0	0.29	22.01	0.03	2.137	14.51	6.74	11.3	88.7	0.0	-2.57	0.68	0.85	3.07	3.2	0.003	0.90	0.0	0.05	19.99	0.00	2.173	7.18	0.05	9.4	90.6	0.0	-0.34	0.45	0.66	0.86	3.07	29271	2651	22	0	143	0	0	logfile
✔	8HSC	34993	2023-04-21	2022-12-19	3.22	3.75	3.39	3.7	0.003	0.70	0.0	0.05	18.31	0.00	2.161	7.83	0.47	5.4	94.6	0.0	-1.27	0.63	0.82	1.68	3.7	0.003	0.61	0.0	0.04	17.98	0.00	2.102	12.57	0.28	5.9	94.1	0.0	-0.65	0.38	0.63	0.82	1.63	10180	1345	7	0	0	0	0	logfile
✔	8HS3	34984	2023-04-20	2022-12-16	3.14	3.64	3.25	3.6	0.005	0.75	0.0	0.05	16.98	0.01	2.141	7.14	0.36	5.6	94.4	0.0	-1.38	0.55	0.78	2.00	3.6	0.004	0.60	0.0	0.04	17.14	0.00	2.156	9.99	0.24	5.1	94.9	0.0	-0.41	0.31	0.54	0.77	2.03	8258	1124	5	0	0	0	0	logfile
✔	8HS2	34983	2023-04-20	2022-12-16	3.08	3.85	3.16	3.6	0.004	0.78	0.0	0.05	14.96	0.01	2.192	7.16	0.17	4.7	95.3	0.0	0.10	0.67	0.87	3.05	3.6	0.004	0.65	0.0	0.04	15.30	0.00	2.204	12.20	0.17	5.5	94.5	0.0	0.78	0.90	0.68	0.88	2.58	5456	716	3	0	0	0	0	logfile
✔	8HRC	34967	2023-04-28	2022-12-15	2.58	2.69	2.60	2.6	0.002	0.48	0.0	0.04	13.75	0.00	2.237	8.80	0.01	1.9	98.1	0.0	1.74	0.79	0.84	2.77	2.6	0.003	0.55	0.0	0.04	16.14	0.00	2.136	9.49	1.75	2.9	97.1	0.0	1.70	1.59	0.81	0.88	3.02	74964	9312	12	0	0	0	0	logfile
✔	8HR7	34962	2023-04-24	2022-12-15	3.96	4.06	4.11	3.9	0.002	0.52	0.0	0.04	14.32	0.00	1.995	11.90	0.07	3.6	96.4	0.0	-0.25	0.74	0.76	1.48	3.9	0.005	0.67	0.0	0.04	16.33	0.00	2.011	16.92	0.32	5.8	94.2	0.0	0.03	1.11	0.74	0.77	1.28	121662	15154	19	0	0	0	0	logfile
✔	8HMV	34903	2023-04-20	2022-12-05	2.91	3.27	3.06	3.2	0.005	0.63	0.0	0.04	13.38	0.00	2.150	4.96	0.00	3.3	96.7	0.0	-0.72	0.67	0.86	4.20	3.2	0.003	0.49	0.0	0.04	15.50	0.00	2.170	4.71	0.45	2.6	97.4	0.0	0.81	0.37	0.66	0.87	3.21	8127	1022	5	0	0	0	0	logfile
✔	8HLA	34859	2023-04-25	2022-11-29	2.81	2.68	2.73	2.8	0.011	0.96	0.0	0.06	14.25	0.01	2.027	19.94	0.09	8.2	91.7	0.1	-2.33	0.62	0.83	3.63	2.8	0.003	0.67	0.0	0.05	17.39	0.00	2.074	15.15	2.34	5.5	94.4	0.1	-0.84	1.24	0.60	0.83	3.21	20868	2580	20	0	12	0	0	logfile
✔	8HK1	34841	2023-04-29	2022-11-24	2.7	2.81	2.75	2.9	0.005	0.89	3.0	0.13	16.22	0.01	1.262	10.95	5.96	3.6	96.3	0.1	-2.81	0.56	0.61	2.14	2.8	0.005	0.78	0.0	0.05	16.67	0.00	2.036	7.86	4.06	5.1	94.9	0.0	0.06	1.31	0.66	0.81	2.51	30236	4205	24	148	5	0	0	logfile
✘	8HJ9	34835	2023-04-20	2022-11-22	3.12	3.29	3.00	3.2	0.004	0.65	0.0	0.04	15.54	0.00	2.234	10.94	0.00	2.7	97.3	0.0	1.80	0.43	0.76	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3274	416	1	0	1	0	0	logfile

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