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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8U2C | 41845 | 2023-12-10 | 2023-09-05 | 2.5 | 2.75 | 2.49 | 2.9 | 0.012 | 1.88 | 5.0 | 0.10 | 13.83 | 0.02 | 2.543 | 0.27 | 1.85 | 4.1 | 95.6 | 0.3 | -1.26 | 0.75 | 0.80 | 3.98 | 2.9 | 0.003 | 0.74 | 0.0 | 0.04 | 16.42 | 0.00 | 2.193 | 8.51 | 2.99 | 3.8 | 96.1 | 0.1 | 0.61 | 0.71 | 0.75 | 0.83 | 2.58 | 15042 | 1948 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8U1o | 41819 | 2023-12-10 | 2023-09-01 | 3.4 | 2.61 | 3.67 | 3.4 | 0.005 | 1.00 | 0.0 | 0.06 | 16.71 | 0.01 | 2.225 | 12.44 | 0.92 | 7.7 | 92.0 | 0.4 | -2.51 | 0.56 | 0.72 | 1.67 | 3.4 | 0.003 | 0.84 | 0.0 | 0.05 | 17.02 | 0.00 | 2.124 | 23.77 | 0.74 | 7.9 | 91.8 | 0.3 | -2.50 | 0.49 | 0.57 | 0.74 | 1.58 | 15096 | 1989 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8U1K | 41815 | 2023-12-07 | 2023-09-01 | 3.5 | 2.89 | 2.72 | 2.8 | 0.004 | 0.61 | 0.0 | 0.04 | 13.64 | 0.00 | 2.206 | 12.32 | 3.33 | 2.3 | 97.7 | 0.0 | -5.99 | 0.45 | 0.75 | 1.99 | 2.8 | 0.003 | 0.81 | 0.0 | 0.04 | 15.78 | 0.00 | 2.150 | 14.98 | 3.33 | 5.6 | 94.4 | 0.0 | -4.80 | 0.94 | 0.46 | 0.74 | 2.82 | 3060 | 450 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8U0T | 41784 | 2023-12-08 | 2023-08-29 | 3.2 | 3.49 | 3.24 | 3.5 | 0.013 | 1.40 | 2.0 | 0.09 | 10.78 | 0.01 | 2.291 | 1.69 | 0.47 | 2.7 | 97.1 | 0.1 | -1.05 | 0.70 | 0.79 | 4.40 | 3.5 | 0.002 | 0.59 | 0.0 | 0.04 | 13.63 | 0.00 | 2.251 | 4.16 | 0.16 | 2.0 | 98.0 | 0.0 | 1.11 | 0.58 | 0.70 | 0.83 | 3.00 | 6761 | 849 | 4 | 0 | 10 | 0 | 0 | logfile |
✔ | 8TZS | 41768 | 2023-12-07 | 2023-08-27 | 3.84 | 4.01 | 3.90 | 4.0 | 0.005 | 0.87 | 0.0 | 0.05 | 15.83 | 0.01 | 2.170 | 9.05 | 0.24 | 3.6 | 96.4 | 0.0 | 0.65 | 0.65 | 0.77 | 1.99 | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 16.70 | 0.00 | 2.092 | 11.72 | 0.24 | 4.6 | 95.4 | 0.0 | 1.34 | 0.96 | 0.66 | 0.77 | 1.31 | 3914 | 480 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TZR | 41767 | 2023-12-08 | 2023-08-27 | 3.5 | 4.05 | 3.67 | 4.0 | 0.006 | 0.84 | 0.0 | 0.05 | 16.85 | 0.01 | 2.229 | 6.61 | 0.53 | 4.5 | 95.5 | 0.0 | -0.18 | 0.55 | 0.74 | 1.80 | 4.0 | 0.005 | 0.70 | 0.0 | 0.04 | 16.06 | 0.00 | 2.183 | 9.48 | 0.32 | 4.5 | 95.5 | 0.0 | -0.30 | 0.94 | 0.57 | 0.76 | 1.74 | 8821 | 1079 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 8TZP | 41765 | 2023-12-08 | 2023-08-27 | 3.23 | 3.70 | 3.38 | 3.6 | 0.004 | 0.73 | 0.0 | 0.04 | 15.23 | 0.01 | 1.341 | 5.58 | 0.27 | 2.8 | 97.2 | 0.0 | 1.16 | 0.67 | 0.84 | 2.54 | 3.6 | 0.004 | 0.58 | 0.0 | 0.04 | 15.50 | 0.00 | 2.182 | 6.60 | 0.13 | 3.8 | 96.2 | 0.0 | 0.70 | 0.90 | 0.68 | 0.85 | 2.54 | 6920 | 859 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 8TZo | 41764 | 2023-12-08 | 2023-08-27 | 3.1 | 3.45 | 3.14 | 3.4 | 0.004 | 0.70 | 0.0 | 0.04 | 16.05 | 0.00 | 2.252 | 5.32 | 0.22 | 3.1 | 96.9 | 0.0 | 0.82 | 0.62 | 0.85 | 2.93 | 3.4 | 0.003 | 0.52 | 0.0 | 0.04 | 15.55 | 0.00 | 2.264 | 6.99 | 0.22 | 3.4 | 96.6 | 0.0 | 0.92 | 0.88 | 0.60 | 0.84 | 2.68 | 8737 | 1070 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 8TZE | 41756 | 2023-12-08 | 2023-08-26 | 2.9 | 3.19 | 2.95 | 3.2 | 0.006 | 0.77 | 0.0 | 0.05 | 15.06 | 0.02 | 2.140 | 7.97 | 1.30 | 3.8 | 95.9 | 0.3 | 0.15 | 0.49 | 0.75 | 3.59 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 16.07 | 0.00 | 2.205 | 5.74 | 1.88 | 3.8 | 96.0 | 0.1 | 0.38 | 0.42 | 0.49 | 0.75 | 3.41 | 6255 | 787 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8TZB | 41753 | 2023-12-08 | 2023-08-26 | 3.1 | 2.37 | — | 3.2 | 0.006 | 0.65 | 0.0 | 0.04 | 15.01 | 0.01 | 2.177 | 10.41 | 0.30 | 5.7 | 94.1 | 0.1 | -0.33 | 0.76 | 0.73 | 2.27 | 3.2 | 0.005 | 0.63 | 0.0 | 0.04 | 15.84 | 0.00 | 2.155 | 10.34 | 0.45 | 6.3 | 93.6 | 0.1 | -0.27 | 0.31 | 0.75 | 0.73 | 2.49 | 7283 | 1012 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8TYQ | 41728 | 2023-12-08 | 2023-08-25 | 2.99 | 2.37 | — | 3.2 | 0.007 | 0.98 | 3.0 | 0.05 | 14.10 | 0.01 | 2.195 | 13.81 | 0.53 | 3.7 | 96.1 | 0.2 | -0.16 | 0.71 | 0.64 | 1.66 | 3.2 | 0.003 | 0.73 | 0.0 | 0.04 | 16.34 | 0.00 | 2.179 | 12.00 | 1.70 | 3.2 | 96.8 | 0.0 | -0.20 | 1.22 | 0.77 | 0.76 | 2.20 | 8529 | 1069 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8TY1 | 41710 | 2023-12-10 | 2023-08-24 | 3.46 | 3.78 | 3.53 | 3.7 | 0.005 | 0.89 | 0.0 | 0.05 | 17.59 | 0.01 | 2.005 | 22.87 | 0.68 | 10.5 | 89.0 | 0.5 | -2.57 | 0.70 | 0.59 | 0.78 | 3.7 | 0.006 | 0.88 | 0.0 | 0.05 | 17.79 | 0.01 | 1.967 | 27.97 | 0.89 | 12.4 | 87.2 | 0.4 | -2.82 | 0.47 | 0.72 | 0.64 | 0.86 | 13508 | 1675 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 8TXB | 41679 | 2023-12-08 | 2023-08-23 | 3.9 | 4.67 | — | 3.9 | 0.012 | 1.13 | 4.0 | 0.05 | 13.61 | 0.01 | 2.101 | 12.59 | 0.57 | 7.2 | 91.8 | 1.0 | -3.20 | 0.58 | 0.79 | 1.71 | 3.9 | 0.004 | 0.75 | 0.0 | 0.04 | 13.99 | 0.01 | 2.106 | 15.26 | 0.27 | 9.0 | 90.5 | 0.5 | -1.74 | 0.63 | 0.58 | 0.80 | 1.77 | 54748 | 7576 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TX1 | 41674 | 2023-12-10 | 2023-08-22 | 3.62 | 4.05 | 3.79 | 3.4 | 0.006 | 0.92 | 0.0 | 0.04 | 15.94 | 0.01 | 2.136 | 12.74 | 0.20 | 6.6 | 93.2 | 0.2 | 0.18 | 0.34 | 0.51 | 0.26 | 3.4 | 0.004 | 0.76 | 0.0 | 0.04 | 16.14 | 0.01 | 2.109 | 17.31 | 0.20 | 10.2 | 89.5 | 0.3 | -1.40 | 1.51 | 0.35 | 0.55 | 0.75 | 13687 | 1894 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TWi | 41668 | 2023-12-08 | 2023-08-21 | 2.69 | 3.44 | 2.68 | 3.2 | 0.002 | 0.46 | 0.0 | 0.04 | 9.78 | 0.00 | 2.049 | 1.24 | 0.67 | 2.2 | 97.8 | 0.0 | 1.15 | 0.77 | 0.81 | 4.65 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 12.75 | 0.00 | 1.992 | 8.16 | 1.12 | 2.6 | 97.4 | 0.0 | 1.72 | 0.96 | 0.78 | 0.84 | 4.15 | 8096 | 510 | 4 | 0 | 2 | 0 | 4023 | logfile |
✔ | 8TWE | 41667 | 2023-12-10 | 2023-08-21 | 2.55 | 3.04 | 2.52 | 2.9 | 0.003 | 0.48 | 0.0 | 0.04 | 10.13 | 0.00 | 1.425 | 1.05 | 0.13 | 0.5 | 99.5 | 0.0 | 1.05 | 0.76 | 0.87 | 5.13 | 2.9 | 0.002 | 0.47 | 0.0 | 0.04 | 13.23 | 0.00 | 2.129 | 2.93 | 0.40 | 1.1 | 98.9 | 0.0 | 0.95 | 0.82 | 0.77 | 0.89 | 4.61 | 13305 | 833 | 4 | 0 | 0 | 0 | 6622 | logfile |
✔ | 8TVU | 41651 | 2023-12-08 | 2023-08-18 | 3.0 | 3.36 | — | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 19.51 | 0.01 | 2.196 | 8.23 | 3.55 | 3.3 | 96.7 | 0.0 | 1.18 | 0.64 | 0.85 | 2.26 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 19.54 | 0.00 | 2.056 | 8.06 | 3.24 | 3.2 | 96.8 | 0.0 | 1.86 | 0.28 | 0.59 | 0.84 | 2.55 | 72840 | 9120 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TUP | 41628 | 2023-12-10 | 2023-08-16 | 3.3 | 3.44 | 3.30 | 3.4 | 0.002 | 0.41 | 0.0 | 0.04 | 14.81 | 0.00 | 2.277 | 4.52 | 0.00 | 2.2 | 97.8 | 0.0 | 2.02 | 0.65 | 0.78 | 2.89 | 3.4 | 0.003 | 0.51 | 0.0 | 0.04 | 15.32 | 0.00 | 2.198 | 6.36 | 0.21 | 1.3 | 98.7 | 0.0 | 2.69 | 0.89 | 0.59 | 0.80 | 2.63 | 12869 | 1590 | 12 | 0 | 3 | 66 | 0 | logfile |
✔ | 8TUL | 41624 | 2023-12-10 | 2023-08-16 | 2.8 | 2.90 | 2.83 | 2.9 | 0.003 | 0.48 | 0.0 | 0.04 | 16.92 | 0.01 | 2.121 | 6.09 | 2.14 | 1.3 | 98.7 | 0.0 | 0.50 | 0.68 | 0.86 | 2.31 | 2.9 | 0.005 | 0.60 | 0.0 | 0.04 | 17.35 | 0.00 | 2.162 | 6.52 | 3.20 | 1.6 | 98.4 | 0.0 | 2.33 | 0.30 | 0.66 | 0.85 | 2.46 | 13070 | 1585 | 15 | 0 | 14 | 281 | 0 | logfile |
✔ | 8TQo | 41510 | 2023-12-09 | 2023-08-08 | 3.1 | 3.83 | 3.25 | 3.7 | 0.002 | 0.54 | 0.0 | 0.04 | 16.86 | 0.00 | 2.202 | 8.77 | 0.16 | 4.5 | 95.5 | 0.0 | 0.14 | 0.76 | 0.83 | 1.75 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 16.87 | 0.00 | 2.204 | 8.36 | 0.08 | 4.7 | 95.3 | 0.0 | 0.48 | 1.02 | 0.71 | 0.80 | 2.67 | 11122 | 1437 | 4 | 0 | 0 | 0 | 0 | logfile |