Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HG1	34731	2023-04-23	2022-11-13	2.8	2.33	2.94	2.1	0.004	0.67	0.0	0.04	15.21	0.00	2.100	5.91	0.13	5.0	94.7	0.3	0.19	0.79	0.79	3.89	2.1	0.003	0.60	0.0	0.04	17.61	0.00	2.184	7.02	1.39	4.7	95.1	0.2	0.39	0.95	0.81	0.82	3.39	14155	1642	6	36	2	0	0	logfile
✔	8HFS	34726	2023-04-23	2022-11-12	2.98	3.10	2.88	3.1	0.003	0.65	0.0	0.04	16.64	0.00	2.164	12.21	3.28	7.5	92.5	0.0	0.18	0.67	0.78	0.87	3.1	0.003	0.64	0.0	0.04	17.32	0.00	2.137	12.87	6.26	7.5	92.5	0.0	0.34	1.12	0.68	0.79	0.82	16216	1798	11	0	3	0	0	logfile
✔	8HDS	34679	2023-04-19	2022-11-06	3.57	3.28	3.59	3.4	0.007	1.11	0.0	0.06	10.70	0.01	2.312	4.13	0.63	10.9	89.1	0.0	-6.20	0.55	0.77	2.49	3.4	0.004	0.71	0.0	0.04	16.09	0.00	2.083	10.70	0.96	9.7	90.3	0.0	-2.59	1.26	0.56	0.78	1.67	53532	6864	24	0	0	0	0	logfile
✔	8HDP	34677	2023-04-20	2022-11-05	3.2	3.72	3.07	3.5	0.003	0.76	0.0	0.08	9.48	0.00	2.006	7.86	0.57	2.7	97.3	0.0	-1.79	0.67	0.75	1.99	3.5	0.003	0.80	0.0	0.07	14.52	0.00	2.145	12.58	0.23	3.5	96.5	0.0	0.66	2.05	0.68	0.80	2.02	8282	1041	5	0	5	0	0	logfile
✔	8HDo	34676	2023-04-20	2022-11-05	2.87	2.99	2.95	3.2	0.004	0.61	0.0	0.04	14.07	0.00	2.069	9.59	0.12	1.5	98.5	0.0	-1.31	0.63	0.77	1.80	3.2	0.003	0.57	0.0	0.04	15.87	0.00	2.140	10.02	3.11	2.5	97.5	0.0	0.97	1.03	0.65	0.85	2.74	8277	1028	5	0	8	0	0	logfile
✔	8HCX	34667	2023-04-21	2022-11-03	3.5	2.57	3.28	3.3	0.003	0.62	0.0	0.04	16.43	0.00	2.117	10.84	0.31	2.5	97.2	0.4	0.14	0.71	0.71	1.23	3.2	0.004	0.78	0.0	0.04	17.07	0.00	2.057	16.23	0.84	3.2	96.7	0.2	0.37	1.13	0.73	0.73	1.19	8933	1159	6	0	0	0	0	logfile
✔	8HCQ	34663	2023-04-21	2022-11-02	3.01	2.26	2.89	2.1	0.003	0.66	0.0	0.04	16.12	0.01	1.609	9.07	0.21	3.7	96.1	0.2	0.43	0.68	0.70	1.49	2.1	0.003	0.66	0.0	0.04	16.77	0.01	2.079	10.54	0.41	4.2	95.8	0.1	0.21	1.08	0.76	0.78	1.64	8991	1157	6	0	0	0	0	logfile
✔	8HC8	34655	2023-04-20	2022-11-01	3.95	4.00	3.84	4.0	0.003	0.71	0.0	0.05	16.65	0.01	2.317	5.70	0.56	4.2	95.8	0.0	-1.17	0.64	0.70	0.79	4.0	0.005	0.70	0.0	0.04	16.47	0.00	2.129	12.78	0.37	6.3	93.7	0.0	-1.61	0.58	0.69	0.78	1.60	4832	628	4	0	1	0	0	logfile
✔	8HC7	34654	2023-04-20	2022-11-01	4.54	4.75	4.46	4.5	0.003	0.61	0.0	0.04	13.42	0.00	2.255	5.72	0.00	4.7	95.3	0.0	-1.52	0.77	0.68	—	4.5	0.003	0.59	0.0	0.04	13.35	0.00	2.186	13.65	0.25	7.2	92.8	0.0	-1.21	1.75	0.80	0.75	—	7373	919	6	0	7	0	0	logfile
✔	8HC6	34653	2023-04-20	2022-11-01	4.69	5.06	4.63	4.8	0.003	0.57	0.0	0.05	13.45	0.00	2.296	4.88	0.12	4.6	95.4	0.0	-0.78	0.80	0.70	—	4.8	0.003	0.62	0.0	0.04	13.41	0.00	2.175	16.76	0.00	6.9	93.1	0.0	-1.56	0.77	0.82	0.75	—	7377	933	6	0	7	0	0	logfile
✔	8HC5	34652	2023-04-22	2022-11-01	3.43	3.51	3.37	3.6	0.002	0.53	0.0	0.04	15.57	0.00	2.249	5.34	0.00	4.0	96.0	0.0	-0.79	0.60	0.59	1.15	3.6	0.003	0.59	0.0	0.04	15.73	0.00	2.091	9.89	0.31	5.1	94.9	0.0	-0.44	0.58	0.69	0.73	2.01	11400	1493	6	0	1	0	0	logfile
✔	8HBD	34619	2023-04-21	2022-10-28	2.99	2.40	2.80	3.0	0.003	0.71	0.0	0.04	16.47	0.00	1.912	13.34	1.85	3.8	96.0	0.2	0.26	0.74	0.76	1.67	2.2	0.003	0.70	0.0	0.04	17.55	0.00	2.050	14.61	2.62	3.7	96.3	0.0	0.20	0.59	0.76	0.79	1.63	8803	1158	6	0	0	0	0	logfile
✔	8HAo	34598	2023-04-24	2022-10-26	3.76	3.06	3.49	3.8	0.003	0.50	0.0	0.04	15.90	0.00	1.785	5.73	0.40	2.9	96.9	0.2	1.91	0.58	0.52	-0.03	3.8	0.004	0.87	0.0	0.05	17.30	0.00	2.050	18.94	0.80	4.4	95.6	0.1	0.27	1.23	0.65	0.69	0.83	18479	2314	12	0	0	0	0	logfile
✔	8HAF	34587	2023-04-21	2022-10-26	3.25	2.28	3.09	2.2	0.003	0.82	0.0	0.07	14.58	0.00	1.671	7.15	0.40	2.8	97.2	0.0	0.83	0.70	0.74	2.25	2.1	0.003	0.79	0.0	0.07	15.75	0.00	1.678	8.89	0.60	2.8	97.2	0.0	0.55	0.53	0.77	0.80	2.95	9681	1167	6	0	17	0	0	logfile
✔	8HA0	34585	2023-04-21	2022-10-26	2.62	2.14	2.52	2.0	0.005	0.78	2.0	0.05	13.83	0.01	1.689	11.43	4.53	2.2	97.2	0.6	-0.68	0.76	0.78	2.69	2.0	0.005	0.62	0.0	0.04	16.38	0.01	2.191	6.20	2.82	3.3	96.4	0.4	0.99	1.31	0.79	0.83	3.88	9385	1155	6	0	7	0	0	logfile
✔	8H8J	34549	2023-04-21	2022-10-23	3.2	2.26	3.27	2.1	0.003	0.64	0.0	0.04	9.84	0.00	1.939	9.85	2.59	2.3	97.6	0.1	-0.78	0.71	0.72	2.45	2.0	0.004	0.66	0.0	0.04	14.13	0.00	2.026	13.27	0.76	3.7	96.3	0.0	0.63	1.17	0.74	0.77	2.27	8842	1139	6	0	5	0	0	logfile
✔	8H8C	34542	2023-04-24	2022-10-22	3.36	3.50	3.41	3.5	0.002	0.47	0.0	0.04	13.15	0.00	2.223	7.53	1.83	9.1	90.9	0.0	-4.07	0.67	0.73	2.31	3.5	0.003	0.67	0.0	0.04	16.15	0.00	2.090	9.51	0.22	13.4	86.6	0.0	-3.43	0.70	0.71	0.82	2.83	16940	2078	4	0	0	0	0	logfile
✔	8H8B	34541	2023-04-20	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.003	0.62	0.0	0.04	15.26	0.00	2.256	6.60	0.34	9.5	90.5	0.0	-1.76	0.61	0.74	0.85	3.67	8344	1027	1	0	0	0	0	logfile
✔	8H8A	34540	2023-04-20	2022-10-22	3.25	3.39	3.26	3.4	0.002	0.50	0.0	0.04	12.99	0.00	2.298	6.57	1.55	8.7	91.2	0.1	-3.31	0.71	0.79	2.16	3.4	0.003	0.66	0.0	0.04	15.54	0.00	2.234	6.27	0.22	11.9	87.9	0.2	-2.50	1.14	0.77	0.89	3.84	8454	1039	2	0	0	0	0	logfile
✔	8H77	34519	2023-04-23	2022-10-19	3.2	2.74	3.17	3.1	0.005	0.84	0.0	0.05	15.36	0.00	1.365	13.60	0.12	5.1	94.9	0.0	-1.57	0.59	0.67	2.51	3.1	0.004	0.66	0.0	0.04	17.53	0.00	0.978	10.16	0.29	4.2	95.8	0.0	-0.93	0.69	0.69	0.77	2.13	15726	1930	8	0	4	0	0	logfile

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