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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6Jo6 | 9854 | 2022-12-21 | 2019-03-20 | 2.9 | 2.92 | — | 2.9 | 0.027 | 2.68 | 0.0 | 0.09 | 18.20 | 0.02 | 1.209 | 8.01 | 0.55 | 4.2 | 95.8 | 0.1 | -2.50 | 0.79 | 0.85 | 4.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45099 | 3899 | 36 | 0 | 285 | 0 | 0 | logfile |
✘ | 3JCU | 6617 | 2022-12-19 | 2016-03-10 | 3.2 | 3.37 | — | 3.2 | 0.012 | 1.45 | 0.0 | 0.07 | 13.92 | 0.01 | 1.210 | 23.56 | 0.03 | 5.0 | 94.1 | 1.0 | -1.00 | 0.79 | 0.84 | 3.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75994 | 7648 | 76 | 0 | 322 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2022-12-19 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.96 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6B3Q | 7041 | 2022-12-18 | 2017-09-22 | 3.7 | 3.84 | 3.74 | 3.7 | 0.005 | 1.03 | 0.0 | 0.06 | 12.29 | 0.01 | 2.212 | 4.15 | 0.00 | 2.6 | 97.4 | 0.0 | -4.53 | 0.80 | 0.78 | 1.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15727 | 1929 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6QEM | 4538 | 2022-12-19 | 2019-01-08 | 3.4 | 3.53 | — | 3.5 | 0.013 | 1.06 | 0.0 | 0.05 | 12.15 | 0.01 | 1.290 | 4.49 | 0.51 | 11.1 | 88.9 | 0.0 | -4.45 | 0.74 | 0.71 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65750 | 4104 | 24 | 26 | 16 | 0 | 32652 | logfile |
✘ | 6PVL | 20492 | 2022-12-18 | 2019-07-21 | 4.4 | 4.48 | — | 4.4 | 0.008 | 1.13 | 0.0 | 0.06 | 11.67 | 0.01 | 2.202 | 6.90 | 1.39 | 15.4 | 84.2 | 0.5 | -5.53 | 0.69 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21006 | 2576 | 5 | 0 | 2 | 0 | 0 | logfile |
✘ | 6PZA | 20530 | 2022-12-18 | 2019-07-31 | 3.74 | 3.92 | — | 3.9 | 0.008 | 1.06 | 0.0 | 0.06 | 10.72 | 0.01 | 2.252 | 3.56 | 0.00 | 8.0 | 92.0 | 0.0 | -4.29 | 0.51 | 0.50 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9659 | 1441 | 3 | 0 | 2 | 0 | 0 | logfile |
✘ | 6i1X | 0326 | 2022-12-19 | 2018-10-30 | 3.7 | 3.83 | — | 3.8 | 0.013 | 1.81 | 34.0 | 0.10 | 14.94 | 0.01 | 0.458 | 50.06 | 4.35 | 7.5 | 90.6 | 1.9 | -3.51 | 0.50 | 0.32 | 0.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54915 | 7290 | 15 | 0 | 0 | 0 | 0 | logfile |
✘ | 6V8X | 21111 | 2022-12-18 | 2019-12-12 | 3.0 | 3.33 | — | 3.2 | 0.017 | 1.43 | 9.0 | 0.08 | 9.63 | 0.01 | 2.180 | 4.39 | 0.23 | 8.5 | 90.6 | 0.9 | -3.90 | 0.82 | 0.77 | 2.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24825 | 2997 | 54 | 0 | 105 | 0 | 0 | logfile |
✘ | 6D00 | 7782 | 2022-12-20 | 2018-04-09 | 4.0 | 3.65 | — | 3.0 | 0.001 | 0.45 | 0.0 | 0.04 | 9.42 | 0.00 | 2.284 | 4.03 | 0.05 | 6.5 | 92.8 | 0.7 | -4.95 | 0.62 | 0.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38328 | 4824 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 5NiK | 3652 | 2022-12-19 | 2017-03-24 | 3.3 | 3.47 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.04 | 10.30 | 0.01 | 0.941 | 22.03 | 0.24 | 6.4 | 91.6 | 1.9 | -1.88 | 0.64 | 0.59 | 1.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35215 | 4582 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ioL | 9696 | 2022-12-22 | 2018-10-30 | 3.76 | 3.62 | 3.77 | 3.8 | 0.005 | 0.97 | 0.0 | 0.06 | 10.77 | 0.01 | 2.201 | 5.12 | 0.33 | 5.6 | 94.4 | 0.0 | -4.06 | 0.63 | 0.80 | 2.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49077 | 6450 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2022-12-19 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.57 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6EXV | 3981 | 2022-12-18 | 2017-11-09 | 3.6 | 3.52 | 3.44 | 3.5 | 0.008 | 1.10 | 0.0 | 0.06 | 12.80 | 0.01 | 2.022 | 5.74 | 0.29 | 8.9 | 91.1 | 0.1 | -4.63 | 0.68 | 0.74 | 3.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32717 | 3905 | 22 | 75 | 9 | 0 | 0 | logfile |
✘ | 6oMB | 20124 | 2022-12-18 | 2019-04-18 | 3.7 | 3.91 | — | 3.8 | 0.010 | 0.96 | 0.0 | 0.05 | 15.28 | 0.03 | 1.515 | 4.75 | 0.18 | 7.3 | 92.7 | 0.0 | -4.26 | 0.75 | 0.81 | 0.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21815 | 2775 | 11 | 0 | 48 | 0 | 0 | logfile |
✘ | 5FN1 | 3236 | 2022-12-19 | 2015-11-10 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64714 | 4123 | 38 | 95 | 0 | 0 | 31749 | logfile |
✘ | 6V6B | 21067 | 2022-12-18 | 2019-12-04 | 3.8 | 3.96 | — | 3.9 | 0.005 | 0.55 | 0.0 | 0.04 | 14.36 | 0.00 | 2.211 | 5.44 | 0.00 | 5.1 | 94.9 | 0.0 | -5.29 | 0.54 | 0.84 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9115 | 1111 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RKo | 4908 | 2022-12-18 | 2019-04-30 | 2.68 | 2.73 | — | 2.7 | 0.008 | 0.98 | 1.0 | 0.04 | 17.31 | 0.00 | 1.130 | 8.11 | 0.42 | 1.4 | 98.6 | 0.0 | -4.70 | 0.73 | 0.88 | 4.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7289 | 875 | 8 | 0 | 9 | 31 | 0 | logfile |
✘ | 6QEL | 4537 | 2022-12-19 | 2019-01-08 | 3.9 | 4.04 | — | 4.0 | 0.011 | 1.02 | 0.0 | 0.05 | 11.57 | 0.01 | 1.292 | 4.73 | 0.46 | 11.6 | 88.4 | 0.0 | -4.53 | 0.79 | 0.76 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64816 | 4092 | 24 | 0 | 24 | 0 | 32302 | logfile |
✘ | 6K0A | 30036 | 2022-12-18 | 2019-05-05 | 4.6 | 4.81 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 15.45 | 0.01 | 2.316 | 2.94 | 0.83 | 5.3 | 94.7 | 0.0 | -4.65 | 0.80 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22276 | 1364 | 14 | 516 | 2 | 0 | 0 | logfile |