Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7BVG	30219	2022-07-04	2020-04-10	3.1	3.58	3.17	3.5	0.008	0.88	4.0	0.05	13.80	0.01	1.185	11.25	0.17	8.6	91.1	0.3	-4.51	0.71	0.86	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17231	2234	6	0	9	0	0	logfile
✘	7JJi	22352	2022-07-05	2020-07-26	3.6	4.10	3.68	4.0	0.020	1.75	0.0	0.13	9.94	0.01	1.183	1.15	0.21	1.6	98.4	0.0	0.52	0.84	0.85	3.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27459	3327	51	0	99	0	0	logfile
✘	6VY2	21456	2022-07-05	2020-02-25	4.86	6.05	—	5.2	0.006	0.91	0.0	0.07	14.28	0.00	2.056	18.44	4.96	5.7	93.8	0.5	-2.41	0.82	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21426	2442	66	0	180	0	0	logfile
✘	6WRD	21881	2022-07-06	2020-04-29	3.62	3.97	—	3.9	0.005	0.73	0.0	0.04	16.20	0.01	1.176	47.19	0.15	9.2	89.8	1.0	-3.06	0.78	0.84	1.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32349	3936	12	66	8	0	0	logfile
✘	6YMY	10848	2022-07-04	2020-04-10	3.41	3.81	3.50	3.7	0.008	1.25	0.0	0.06	16.55	0.01	0.424	7.47	0.27	8.9	91.0	0.1	-6.00	0.68	0.82	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14612	1766	19	0	16	0	0	logfile
✘	6YMX	10847	2022-07-08	2020-04-10	3.17	3.73	3.27	3.6	0.010	1.11	0.0	0.06	15.99	0.01	1.201	7.02	0.39	6.1	93.9	0.1	-5.84	0.76	0.85	2.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	47034	5759	47	0	38	0	0	logfile
✘	6WR6	21879	2022-07-06	2020-04-29	4.14	4.27	—	4.1	0.009	1.03	0.0	0.05	18.01	0.01	1.175	61.32	0.27	9.4	89.9	0.7	-3.01	0.81	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33509	3830	12	162	6	0	0	logfile
✘	6YXR	10995	2022-07-03	2020-05-03	3.4	3.53	3.43	3.5	0.019	2.23	2.0	0.13	19.52	0.02	1.197	27.04	0.44	4.1	95.7	0.3	-3.53	0.67	0.76	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31910	2783	20	0	194	0	0	logfile
✘	6VXK	21442	2022-07-04	2020-02-22	3.1	3.57	—	3.2	0.011	0.83	0.0	0.05	14.64	0.00	2.122	15.48	8.05	10.5	89.5	0.0	-3.69	0.86	0.88	3.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17418	2254	8	0	18	0	0	logfile
✘	6SL5	10236	2022-07-08	2019-08-18	2.84	2.97	2.83	3.0	0.026	2.95	9.0	0.13	20.95	0.02	1.187	20.83	0.73	7.3	92.0	0.7	-3.12	0.71	0.77	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43789	3744	36	0	292	0	0	logfile
✘	6KPJ	0748	2022-07-03	2019-08-15	2.56	3.82	—	3.3	0.014	0.91	0.0	0.06	12.13	0.00	1.218	8.38	0.00	6.7	93.3	0.0	-4.33	0.85	0.86	3.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62845	3936	24	0	48	0	31225	logfile
✘	6WRG	21883	2022-07-06	2020-04-29	3.58	3.96	—	3.9	0.009	0.96	0.0	0.05	17.28	0.01	1.173	50.61	0.24	9.1	90.1	0.8	-3.02	0.80	0.84	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32527	3850	12	102	8	0	0	logfile
✘	6KQo	0754	2022-07-03	2019-08-18	2.52	3.75	—	3.2	0.019	1.15	0.0	0.07	14.44	0.00	1.259	10.69	0.03	9.4	90.6	0.0	-5.07	0.87	0.85	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63373	3936	24	0	48	0	31225	logfile
✘	7BVE	30217	2022-07-06	2020-04-10	2.81	3.29	2.89	3.2	0.010	1.15	5.0	0.07	9.62	0.01	1.182	5.42	0.28	7.5	92.3	0.2	-4.01	0.64	0.82	4.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17146	2236	8	0	8	0	0	logfile
✘	6KPA	0742	2022-07-03	2019-08-15	2.75	3.85	—	3.3	0.015	0.92	0.0	0.06	13.60	0.00	1.260	6.66	0.00	6.7	93.3	0.0	-4.52	0.87	0.88	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62845	3936	24	0	48	0	31225	logfile
✘	6WR8	21880	2022-07-06	2020-04-29	3.53	3.69	—	3.5	0.009	0.89	0.0	0.05	20.31	0.01	1.175	56.50	7.88	8.0	91.4	0.6	-2.77	0.81	0.85	1.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31608	3688	10	124	5	0	0	logfile
✘	6KPH	0746	2022-07-03	2019-08-15	2.41	3.45	—	3.2	0.014	1.01	0.0	0.15	13.14	0.00	1.260	8.27	0.00	8.5	91.5	0.0	-4.25	0.81	0.85	4.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62832	3936	24	0	48	0	31212	logfile
✘	6VKS	21228	2022-07-05	2020-01-22	3.02	3.41	—	3.4	0.006	0.89	0.0	0.05	15.02	0.01	1.184	8.75	0.00	3.2	96.8	0.0	-3.88	0.74	0.79	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24034	3131	6	0	18	0	0	logfile
✘	6YAL	10760	2022-07-05	2020-03-12	3.0	3.10	—	3.1	0.022	2.09	46.0	0.12	14.75	0.02	0.805	12.14	2.62	10.0	86.1	3.9	-4.12	0.54	0.64	1.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	90085	6322	42	1861	5	0	0	logfile
✘	7JM6	22386	2022-07-04	2020-07-31	2.92	2.96	—	2.9	0.005	0.77	0.0	0.04	12.86	0.00	1.180	6.01	0.72	2.3	97.7	0.0	1.30	0.58	0.81	3.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21084	1334	6	0	12	72	10504	logfile

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