Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6Jo6	9854	2022-12-21	2019-03-20	2.9	2.92	—	2.9	0.027	2.68	0.0	0.09	18.20	0.02	1.209	8.01	0.55	4.2	95.8	0.1	-2.50	0.79	0.85	4.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45099	3899	36	0	285	0	0	logfile
✘	3JCU	6617	2022-12-19	2016-03-10	3.2	3.37	—	3.2	0.012	1.45	0.0	0.07	13.92	0.01	1.210	23.56	0.03	5.0	94.1	1.0	-1.00	0.79	0.84	3.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75994	7648	76	0	322	0	0	logfile
✘	5GW5	9541	2022-12-19	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.96	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	6B3Q	7041	2022-12-18	2017-09-22	3.7	3.84	3.74	3.7	0.005	1.03	0.0	0.06	12.29	0.01	2.212	4.15	0.00	2.6	97.4	0.0	-4.53	0.80	0.78	1.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15727	1929	4	0	0	0	0	logfile
✘	6QEM	4538	2022-12-19	2019-01-08	3.4	3.53	—	3.5	0.013	1.06	0.0	0.05	12.15	0.01	1.290	4.49	0.51	11.1	88.9	0.0	-4.45	0.74	0.71	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65750	4104	24	26	16	0	32652	logfile
✘	6PVL	20492	2022-12-18	2019-07-21	4.4	4.48	—	4.4	0.008	1.13	0.0	0.06	11.67	0.01	2.202	6.90	1.39	15.4	84.2	0.5	-5.53	0.69	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21006	2576	5	0	2	0	0	logfile
✘	6PZA	20530	2022-12-18	2019-07-31	3.74	3.92	—	3.9	0.008	1.06	0.0	0.06	10.72	0.01	2.252	3.56	0.00	8.0	92.0	0.0	-4.29	0.51	0.50	0.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9659	1441	3	0	2	0	0	logfile
✘	6i1X	0326	2022-12-19	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54915	7290	15	0	0	0	0	logfile
✘	6V8X	21111	2022-12-18	2019-12-12	3.0	3.33	—	3.2	0.017	1.43	9.0	0.08	9.63	0.01	2.180	4.39	0.23	8.5	90.6	0.9	-3.90	0.82	0.77	2.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24825	2997	54	0	105	0	0	logfile
✘	6D00	7782	2022-12-20	2018-04-09	4.0	3.65	—	3.0	0.001	0.45	0.0	0.04	9.42	0.00	2.284	4.03	0.05	6.5	92.8	0.7	-4.95	0.62	0.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38328	4824	12	0	12	0	0	logfile
✘	5NiK	3652	2022-12-19	2017-03-24	3.3	3.47	—	3.4	0.010	1.29	0.0	0.04	10.30	0.01	0.941	22.03	0.24	6.4	91.6	1.9	-1.88	0.64	0.59	1.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35215	4582	11	0	0	0	0	logfile
✘	6ioL	9696	2022-12-22	2018-10-30	3.76	3.62	3.77	3.8	0.005	0.97	0.0	0.06	10.77	0.01	2.201	5.12	0.33	5.6	94.4	0.0	-4.06	0.63	0.80	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49077	6450	12	0	0	0	0	logfile
✘	5GW4	9540	2022-12-19	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.57	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	6EXV	3981	2022-12-18	2017-11-09	3.6	3.52	3.44	3.5	0.008	1.10	0.0	0.06	12.80	0.01	2.022	5.74	0.29	8.9	91.1	0.1	-4.63	0.68	0.74	3.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32717	3905	22	75	9	0	0	logfile
✘	6oMB	20124	2022-12-18	2019-04-18	3.7	3.91	—	3.8	0.010	0.96	0.0	0.05	15.28	0.03	1.515	4.75	0.18	7.3	92.7	0.0	-4.26	0.75	0.81	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21815	2775	11	0	48	0	0	logfile
✘	5FN1	3236	2022-12-19	2015-11-10	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64714	4123	38	95	0	0	31749	logfile
✘	6V6B	21067	2022-12-18	2019-12-04	3.8	3.96	—	3.9	0.005	0.55	0.0	0.04	14.36	0.00	2.211	5.44	0.00	5.1	94.9	0.0	-5.29	0.54	0.84	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9115	1111	2	0	0	0	0	logfile
✘	6RKo	4908	2022-12-18	2019-04-30	2.68	2.73	—	2.7	0.008	0.98	1.0	0.04	17.31	0.00	1.130	8.11	0.42	1.4	98.6	0.0	-4.70	0.73	0.88	4.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7289	875	8	0	9	31	0	logfile
✘	6QEL	4537	2022-12-19	2019-01-08	3.9	4.04	—	4.0	0.011	1.02	0.0	0.05	11.57	0.01	1.292	4.73	0.46	11.6	88.4	0.0	-4.53	0.79	0.76	1.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64816	4092	24	0	24	0	32302	logfile
✘	6K0A	30036	2022-12-18	2019-05-05	4.6	4.81	—	4.5	0.003	0.70	0.0	0.04	15.45	0.01	2.316	2.94	0.83	5.3	94.7	0.0	-4.65	0.80	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22276	1364	14	516	2	0	0	logfile

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