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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6N1i | 8903 | 2024-03-15 | 2018-11-08 | 3.58 | 3.63 | — | 3.6 | 0.009 | 1.13 | 0.0 | 0.06 | 9.87 | 0.01 | 1.147 | 27.10 | 0.00 | 2.4 | 97.6 | 0.0 | -6.04 | 0.42 | 0.58 | 0.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11136 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BD3 | 15973 | 2024-03-13 | 2022-10-18 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 117990 | 10804 | 166 | 0 | 722 | 224 | 0 | logfile |
✘ | 8CE7 | 16600 | 2024-03-15 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BQW | 16189 | 2024-03-17 | 2023-01-18 | 2.3 | 2.12 | 2.14 | 2.2 | 0.008 | 1.14 | 0.0 | 0.07 | 8.96 | 0.00 | 0.052 | 12.77 | 0.00 | 9.6 | 90.4 | 0.0 | -3.78 | 0.46 | 0.75 | 7.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17385 | 2310 | 90 | 0 | 270 | 135 | 0 | logfile |
✘ | 8SS7 | 40746 | 2024-03-18 | 2023-05-08 | 2.76 | 2.92 | 2.87 | 3.0 | 0.022 | 1.64 | 0.0 | 0.36 | 22.55 | 0.01 | 2.252 | 6.95 | 1.45 | 5.7 | 93.8 | 0.5 | -5.34 | 0.68 | 0.77 | 4.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19437 | 2266 | 12 | 0 | 46 | 0 | 0 | logfile |
✘ | 8BQV | 16188 | 2024-03-11 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✘ | 7PLU | 13502 | 2024-03-19 | 2021-09-01 | 3.2 | 3.11 | 3.17 | 3.0 | 0.005 | 0.85 | 4.0 | 0.05 | 14.78 | 0.01 | 1.314 | 5.25 | 0.04 | 0.1 | 99.9 | 0.0 | -1.57 | 0.89 | 0.82 | 3.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23288 | 2906 | 13 | 0 | 9 | 0 | 0 | logfile |
✘ | 2XEA | 1730 | 2024-03-12 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.75 | 0.02 | 1.226 | 2.63 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |
✘ | 5LJV | 4062 | 2024-03-16 | 2016-07-21 | 3.64 | 3.75 | — | 3.7 | 0.030 | 2.85 | 85.0 | 0.16 | 18.81 | 0.02 | 2.070 | 21.28 | 11.82 | 7.4 | 89.7 | 2.9 | -4.53 | 0.71 | 0.84 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15000 | 1950 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 7EK1 | 31165 | 2024-03-10 | 2021-04-03 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.75 | — | — | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53500 | 6720 | 20 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FLE | 29276 | 2024-03-21 | 2022-12-21 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144139 | 8150 | 66 | 3646 | 93 | 0 | 0 | logfile |
✘ | 6NEF | 9357 | 2024-03-21 | 2018-12-17 | 3.4 | 3.55 | — | 3.5 | 0.021 | 1.83 | 0.0 | 0.07 | 16.56 | 0.01 | 1.696 | 41.21 | 0.04 | 24.1 | 72.2 | 3.7 | -6.35 | 0.42 | 0.36 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29457 | 3663 | 9 | 0 | 63 | 0 | 0 | logfile |
✘ | 8B3o | 15831 | 2024-03-18 | 2022-09-16 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8ADW | 15372 | 2024-03-11 | 2022-07-11 | 2.95 | 2.93 | 2.87 | 3.0 | 0.009 | 1.46 | 0.0 | 0.07 | 22.42 | 0.01 | 2.469 | 8.01 | 23.33 | 7.7 | 92.3 | 0.0 | -4.02 | 0.51 | 0.80 | 4.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6920 | 990 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 8JPo | 36485 | 2024-03-15 | 2023-06-12 | 3.4 | 3.43 | 3.16 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 12.94 | 0.00 | 2.267 | 6.38 | 0.00 | 2.8 | 97.2 | 0.0 | 0.44 | 0.75 | 0.90 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11476 | 1466 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 8T1E | 40961 | 2024-03-18 | 2023-06-02 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22115 | 2516 | 12 | 0 | 43 | 36 | 0 | logfile |
✘ | 6W64 | 21552 | 2024-03-11 | 2020-03-16 | 3.9 | 4.06 | — | 4.0 | 0.003 | 0.58 | 0.0 | 0.04 | 16.24 | 0.00 | 2.196 | 9.67 | 1.29 | 7.0 | 92.9 | 0.1 | 0.30 | 0.74 | 0.70 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8505 | 928 | 3 | 56 | 0 | 0 | 0 | logfile |
✘ | 6XXE | 10648 | 2024-03-15 | 2020-01-27 | 3.49 | 2.31 | — | 3.3 | 0.007 | 1.09 | 0.0 | 0.06 | 11.82 | 0.00 | 2.471 | 6.11 | 2.27 | 11.0 | 89.0 | 0.0 | -4.99 | 0.62 | 0.57 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12816 | 1776 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AZU | 15772 | 2024-03-19 | 2022-09-06 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.07 | — | — | 4.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23856 | 3108 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AZT | 15771 | 2024-03-10 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |