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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6BWF | 7298 | 2023-02-24 | 2017-12-14 | 4.1 | 4.19 | — | 4.2 | 0.008 | 1.49 | 2.0 | 0.07 | 12.82 | 0.01 | 2.204 | 12.32 | 0.59 | 12.1 | 86.6 | 1.3 | -5.34 | 0.62 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22174 | 2584 | 4 | 0 | 480 | 0 | 0 | logfile |
✘ | 7WTC | 32778 | 2023-02-26 | 2022-02-04 | 4.0 | 4.61 | — | 3.1 | 0.008 | 0.82 | 0.0 | 0.05 | 13.69 | 0.01 | 2.060 | 22.27 | 0.10 | 8.0 | 92.0 | 0.1 | -0.78 | 0.86 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28418 | 3661 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2023-02-24 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.53 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.69 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2023-02-25 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2023-02-25 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 5MLV | 3527 | 2023-02-22 | 2016-12-07 | 4.5 | 4.47 | — | 4.4 | 0.010 | 1.21 | 0.0 | 0.06 | 17.43 | 0.01 | 2.060 | 8.31 | 0.20 | 9.0 | 91.0 | 0.0 | -4.85 | 0.67 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56928 | 7218 | 36 | 6 | 24 | 0 | 0 | logfile |
✘ | 6RoH | 4972 | 2023-02-20 | 2019-05-13 | 2.8 | 2.94 | 2.83 | 2.9 | 0.006 | 0.88 | 0.0 | 0.05 | 13.67 | 0.01 | 1.709 | 4.00 | 0.23 | 3.4 | 96.6 | 0.0 | -4.73 | 0.68 | 0.79 | 3.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11758 | 1449 | 7 | 0 | 9 | 2 | 0 | logfile |
✘ | 7DH0 | 30677 | 2023-02-23 | 2020-11-12 | 4.2 | 4.70 | — | 4.5 | 0.007 | 1.27 | 0.0 | 0.06 | 11.24 | 0.01 | 1.514 | 6.99 | 0.60 | 16.3 | 83.1 | 0.6 | -5.67 | 0.84 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60091 | 7904 | 57 | 0 | 17 | 0 | 0 | logfile |
✘ | 7D44 | 30569 | 2023-02-26 | 2020-09-22 | 4.0 | 4.14 | — | 4.0 | 0.006 | 0.86 | 0.0 | 0.05 | 14.78 | 0.00 | 2.049 | 20.50 | 0.28 | 16.3 | 83.6 | 0.1 | -5.25 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28391 | 3825 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6LBH | 0869 | 2023-02-19 | 2019-11-14 | 3.7 | 3.79 | — | 3.8 | 0.006 | 0.82 | 0.0 | 0.05 | 13.62 | 0.00 | 2.079 | 18.56 | 0.20 | 7.7 | 92.2 | 0.2 | -2.87 | 0.75 | 0.83 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9219 | 1236 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ELA | 31178 | 2023-02-20 | 2021-04-09 | 3.4 | 3.44 | — | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 15.25 | 0.00 | 2.153 | 11.82 | 2.79 | 7.9 | 92.1 | 0.0 | -2.61 | 0.72 | 0.78 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11791 | 1451 | 5 | 7 | 3 | 0 | 0 | logfile |
✘ | 6JZo | 9898 | 2023-02-23 | 2019-05-03 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21405 | 2657 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6HiQ | 0227 | 2023-02-21 | 2018-08-30 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16110 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 7YPA | 33997 | 2023-02-25 | 2022-08-03 | 3.05 | 3.16 | 3.05 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 14.85 | 0.01 | 2.191 | 3.02 | 0.08 | 3.1 | 96.9 | 0.0 | -3.59 | 0.76 | 0.81 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26022 | 3129 | 10 | 86 | 3 | 0 | 0 | logfile |
✘ | 6NZK | 0557 | 2023-02-27 | 2019-02-13 | 2.8 | 2.92 | — | 2.9 | 0.025 | 1.80 | 0.0 | 0.17 | 10.31 | 0.01 | 2.033 | 0.97 | 0.39 | 1.6 | 98.3 | 0.1 | 0.52 | 0.79 | 0.85 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29268 | 3525 | 39 | 0 | 105 | 396 | 0 | logfile |
✘ | 6D6R | 7809 | 2023-02-28 | 2018-04-22 | 3.45 | 2.80 | — | 3.3 | 0.008 | 0.68 | 0.0 | 0.04 | 10.12 | 0.00 | 1.816 | 9.28 | 0.03 | 10.0 | 90.0 | 0.0 | -4.48 | 0.83 | 0.79 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31639 | 3889 | 17 | 61 | 3 | 0 | 0 | logfile |
✘ | 6i53 | 4411 | 2023-02-21 | 2018-11-12 | 3.2 | 3.37 | 3.20 | 3.3 | 0.006 | 0.88 | 0.0 | 0.05 | 9.04 | 0.01 | 2.264 | 3.96 | 0.00 | 3.7 | 96.3 | 0.0 | -4.72 | 0.52 | 0.70 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15362 | 1821 | 16 | 0 | 34 | 0 | 0 | logfile |
✘ | 7ZR8 | 14886 | 2023-02-17 | 2022-05-03 | 3.7 | 3.81 | 3.43 | 3.8 | 0.003 | 0.46 | 0.0 | 0.04 | 8.45 | 0.00 | 2.181 | 7.02 | 0.74 | 3.9 | 96.1 | 0.0 | -0.94 | 0.72 | 0.82 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3693 | 471 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 6QEM | 4538 | 2023-02-24 | 2019-01-08 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65750 | 4104 | 24 | 26 | 16 | 0 | 32652 | logfile |
✘ | 7K21 | 22639 | 2023-02-20 | 2020-09-08 | 3.0 | 3.25 | — | 3.1 | 0.007 | 0.87 | 0.0 | 0.06 | 10.39 | 0.01 | 2.066 | 5.07 | 0.00 | 2.5 | 97.5 | 0.0 | -4.23 | 0.72 | 0.87 | 4.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11848 | 1488 | 8 | 0 | 16 | 0 | 0 | logfile |