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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5M64 | 3449 | 2023-07-16 | 2016-10-24 | 4.6 | 4.57 | — | 4.5 | 0.003 | 0.69 | 2.0 | 0.05 | 12.90 | 0.00 | 1.067 | 13.00 | 2.03 | 4.9 | 95.0 | 0.1 | -4.55 | 0.71 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35876 | 4383 | 22 | 51 | 6 | 0 | 0 | logfile |
✘ | 6R0Y | 4700 | 2023-07-18 | 2019-03-13 | 3.9 | 3.89 | — | 3.9 | 0.009 | 1.08 | 0.0 | 0.06 | 10.27 | 0.01 | 2.169 | 5.26 | 0.31 | 7.3 | 92.7 | 0.0 | -4.22 | 0.84 | 0.84 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40169 | 5845 | 28 | 0 | 3 | 0 | 0 | logfile |
✘ | 8B3o | 15831 | 2023-07-10 | 2022-09-16 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6KUR | 9581 | 2023-07-06 | 2019-09-02 | 3.7 | 3.80 | — | 3.8 | 0.004 | 0.79 | 0.0 | 0.05 | 10.86 | 0.01 | 2.143 | 6.20 | 1.01 | 7.0 | 92.9 | 0.1 | -4.96 | 0.74 | 0.78 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12384 | 1465 | 5 | 28 | 0 | 0 | 0 | logfile |
✘ | 7BSP | 30163 | 2023-07-06 | 2020-03-31 | 4.0 | 4.12 | — | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 13.90 | 0.01 | 1.928 | 53.93 | 0.00 | 14.6 | 85.4 | 0.0 | -7.27 | 0.68 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11010 | 1352 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 6GDG | 4390 | 2023-07-04 | 2018-04-23 | 4.11 | 3.92 | — | 4.0 | 0.008 | 1.10 | 0.0 | 0.06 | 12.81 | 0.00 | 2.449 | 0.87 | 2.07 | 4.9 | 94.6 | 0.5 | -3.15 | 0.76 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7223 | 997 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7VDM | 31923 | 2023-07-04 | 2021-09-07 | 2.98 | 2.90 | — | 3.0 | 0.008 | 1.29 | 0.0 | 0.07 | 13.54 | 0.01 | 2.261 | 4.17 | 0.22 | 4.5 | 95.5 | 0.0 | -2.74 | 0.66 | 0.77 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8563 | 1096 | 7 | 0 | 1 | 0 | 0 | logfile |
✘ | 5UK1 | 8563 | 2023-07-16 | 2017-01-19 | 4.8 | 7.30 | — | 7.0 | 0.010 | 1.28 | 0.0 | 0.07 | 10.82 | 0.01 | 2.106 | 4.22 | 0.16 | 8.1 | 91.8 | 0.1 | -3.97 | 0.88 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 7DBH | 30631 | 2023-07-05 | 2020-10-20 | 3.6 | 4.18 | — | 3.4 | 0.007 | 0.74 | 1.0 | 0.05 | 28.88 | 0.00 | 1.451 | 11.99 | 0.17 | 3.2 | 96.8 | 0.0 | 0.54 | 0.91 | 0.85 | 2.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10631 | 697 | 10 | 252 | 0 | 0 | 0 | logfile |
✘ | 8DQ0 | 27645 | 2023-07-10 | 2022-07-18 | 3.74 | 3.61 | 3.79 | 3.6 | 0.008 | 0.98 | 0.0 | 0.05 | 15.88 | 0.01 | 2.203 | 6.20 | 1.20 | 4.9 | 95.1 | 0.0 | -1.54 | 0.53 | 0.72 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17129 | 1075 | 6 | 0 | 2 | 0 | 8445 | logfile |
✘ | 5ZAK | 6904 | 2023-07-06 | 2018-02-07 | 4.4 | 3.52 | — | 3.2 | 0.009 | 1.61 | 1.0 | 0.07 | 11.72 | 0.01 | 2.185 | 17.87 | 0.72 | 17.3 | 82.4 | 0.3 | -5.20 | 0.80 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11112 | 1389 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 5UK2 | 8564 | 2023-07-16 | 2017-01-19 | 4.8 | 4.64 | — | 4.6 | 0.012 | 1.36 | 0.0 | 0.07 | 11.26 | 0.01 | 2.083 | 3.96 | 0.16 | 8.7 | 91.1 | 0.1 | -4.11 | 0.80 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 7ND7 | 12278 | 2023-07-16 | 2021-01-30 | 3.6 | 3.91 | — | 3.8 | 0.004 | 0.63 | 0.0 | 0.05 | 11.00 | 0.00 | 2.229 | 3.62 | 0.38 | 3.7 | 96.2 | 0.2 | -0.12 | 0.77 | 0.72 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29591 | 3699 | 30 | 0 | 64 | 0 | 0 | logfile |
✘ | 6MZU | 9307 | 2023-07-15 | 2018-11-05 | 3.4 | 3.56 | — | 3.5 | 0.006 | 0.72 | 0.0 | 0.05 | 8.11 | 0.01 | 2.309 | 6.63 | 0.03 | 2.5 | 97.5 | 0.0 | -4.73 | 0.78 | 0.85 | 4.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32833 | 4523 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2023-07-11 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✘ | 7XJi | 33228 | 2023-07-04 | 2022-04-18 | 3.9 | 3.60 | 3.70 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 13.86 | 0.00 | 2.165 | 9.02 | 0.00 | 4.3 | 95.7 | 0.0 | -0.25 | 0.61 | 0.78 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7851 | 1027 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7oY8 | 13110 | 2023-07-11 | 2021-06-23 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22902 | 2293 | 103 | 0 | 68 | 372 | 0 | logfile |
✘ | 5M5W | 3446 | 2023-07-16 | 2016-10-23 | 3.8 | 3.89 | — | 3.9 | 0.003 | 0.62 | 4.0 | 0.05 | 12.18 | 0.00 | 1.405 | 11.80 | 1.35 | 4.3 | 95.6 | 0.1 | -4.15 | 0.68 | 0.68 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34780 | 4271 | 21 | 43 | 7 | 0 | 0 | logfile |
✘ | 6XKT | 22224 | 2023-07-06 | 2020-06-27 | 3.75 | 3.88 | — | 3.8 | 0.009 | 0.99 | 1.0 | 0.07 | 13.78 | 0.01 | 1.732 | 26.25 | 0.08 | 16.5 | 83.1 | 0.4 | -4.20 | 0.75 | 0.79 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13079 | 1678 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 6RAJ | 4777 | 2023-07-05 | 2019-04-06 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10198 | 1282 | 5 | 0 | 4 | 0 | 0 | logfile |