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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6VVZ | 21408 | 2022-12-18 | 2020-02-18 | 3.72 | 4.46 | — | 4.0 | 0.008 | 0.92 | 0.0 | 0.05 | 20.23 | 0.01 | 1.180 | 9.80 | 6.36 | 7.1 | 92.8 | 0.1 | -3.51 | 0.90 | 0.85 | 1.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29860 | 3508 | 12 | 127 | 4 | 0 | 0 | logfile |
✘ | 6YBP | 10770 | 2022-12-19 | 2020-03-17 | 3.48 | 3.86 | — | 3.8 | 0.008 | 0.76 | 0.0 | 0.05 | 14.57 | 0.01 | 1.184 | 8.10 | 0.00 | 6.4 | 93.6 | 0.0 | -2.69 | 0.74 | 0.85 | 2.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36410 | 4702 | 24 | 0 | 12 | 0 | 0 | logfile |
✘ | 7AoE | 11842 | 2022-12-18 | 2020-10-14 | 3.9 | 4.08 | — | 4.0 | 0.007 | 0.92 | 0.0 | 0.05 | 15.84 | 0.01 | 1.910 | 21.75 | 0.57 | 11.4 | 88.3 | 0.3 | -4.07 | 0.71 | 0.78 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30828 | 3768 | 20 | 46 | 6 | 0 | 0 | logfile |
✘ | 7CQK | 30442 | 2022-12-18 | 2020-08-11 | 3.3 | 3.38 | — | 3.3 | 0.010 | 1.35 | 3.0 | 0.08 | 19.24 | 0.01 | 0.963 | 30.09 | 21.66 | 11.3 | 87.7 | 1.0 | -5.35 | 0.70 | 0.84 | 2.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8859 | 1116 | 7 | 0 | 2 | 0 | 0 | logfile |
✘ | 6RPo | 4979 | 2022-12-19 | 2019-05-14 | 2.39 | 2.44 | — | 2.4 | 0.006 | 0.92 | 0.0 | 0.05 | 15.02 | 0.01 | 2.326 | 7.31 | 0.00 | 3.7 | 95.8 | 0.5 | -2.67 | 0.72 | 0.86 | 4.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 101400 | 12060 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 7LUM | 23522 | 2022-12-19 | 2021-02-22 | 4.5 | 4.68 | — | 4.6 | 0.007 | 0.85 | 0.0 | 0.05 | 14.02 | 0.00 | 1.970 | 26.31 | 0.00 | 7.5 | 92.3 | 0.2 | -0.70 | 0.79 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63978 | 8374 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RPK | 4977 | 2022-12-19 | 2019-05-14 | 2.84 | 2.92 | — | 2.9 | 0.006 | 0.83 | 0.0 | 0.05 | 13.25 | 0.01 | 0.152 | 22.63 | 0.00 | 5.5 | 94.0 | 0.5 | -3.71 | 0.71 | 0.83 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103090 | 12261 | 61 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VVX | 21406 | 2022-12-18 | 2020-02-18 | 3.39 | 4.23 | — | 3.8 | 0.007 | 0.84 | 0.0 | 0.05 | 18.93 | 0.01 | 1.182 | 5.43 | 3.99 | 6.2 | 93.8 | 0.0 | -3.74 | 0.90 | 0.87 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29858 | 3508 | 12 | 128 | 4 | 0 | 0 | logfile |
✘ | 6VEF | 21156 | 2022-12-18 | 2019-12-31 | 4.08 | 4.14 | — | 4.1 | 0.009 | 1.19 | 0.0 | 0.07 | 11.76 | 0.01 | 1.866 | 12.30 | 0.00 | 10.4 | 89.5 | 0.1 | -4.48 | 0.77 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13414 | 1688 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7CZY | 30521 | 2022-12-18 | 2020-09-09 | 3.3 | 3.38 | — | 3.3 | 0.011 | 1.00 | 0.0 | 0.07 | 17.68 | 0.01 | 1.865 | 25.81 | 12.01 | 10.3 | 87.0 | 2.6 | -3.80 | 0.62 | 0.70 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31186 | 3880 | 33 | 0 | 76 | 0 | 0 | logfile |
✘ | 6ZKS | 11260 | 2022-12-19 | 2020-06-30 | 3.1 | 2.60 | — | 2.9 | 0.007 | 0.99 | 0.0 | 1.03 | 11.39 | 0.01 | 2.218 | 6.07 | 0.10 | 3.9 | 96.1 | 0.0 | -3.09 | 0.57 | 0.78 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66294 | 8070 | 67 | 0 | 36 | 0 | 0 | logfile |
✘ | 7LH2 | 23334 | 2022-12-18 | 2021-01-21 | 3.43 | 4.01 | — | 3.9 | 0.003 | 0.56 | 0.0 | 0.04 | 13.18 | 0.00 | 2.030 | 7.06 | 0.18 | 2.7 | 97.3 | 0.0 | 0.96 | 0.66 | 0.82 | 1.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10528 | 1360 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7AGG | 11779 | 2022-12-18 | 2020-09-22 | 3.3 | 3.68 | — | 3.6 | 0.007 | 0.79 | 0.0 | 0.05 | 13.16 | 0.01 | 1.980 | 6.95 | 0.00 | 4.2 | 95.8 | 0.0 | -1.18 | 0.83 | 0.80 | 3.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8252 | 1056 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6YEZ | 10798 | 2022-12-20 | 2020-03-25 | 2.7 | 3.21 | 2.66 | 3.1 | 0.025 | 2.78 | 6.0 | 0.13 | 20.66 | 0.01 | 1.193 | 31.18 | 0.61 | 5.2 | 94.5 | 0.4 | -1.96 | 0.77 | 0.87 | 2.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39217 | 3438 | 35 | 0 | 244 | 2 | 0 | logfile |
✘ | 6T7S | 10371 | 2022-12-18 | 2019-10-23 | 4.5 | 4.67 | — | 4.5 | 0.004 | 0.93 | 0.0 | 0.06 | 14.16 | 0.01 | 2.278 | 7.26 | 0.28 | 6.0 | 94.0 | 0.0 | -4.74 | 0.65 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23436 | 3090 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6XZD | 10659 | 2022-12-19 | 2020-02-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7KDK | 22825 | 2022-12-18 | 2020-10-08 | 2.8 | 3.18 | — | 3.1 | 0.013 | 1.77 | 8.0 | 0.10 | 12.82 | 0.01 | 2.490 | 0.43 | 0.12 | 5.2 | 94.7 | 0.1 | -0.98 | 0.75 | 0.77 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23688 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✘ | 7CKZ | 30395 | 2022-12-18 | 2020-07-20 | 3.1 | 3.23 | — | 3.2 | 0.003 | 0.52 | 0.0 | 0.04 | 13.75 | 0.00 | 1.570 | 23.13 | 0.93 | 3.1 | 96.9 | 0.0 | -3.38 | 0.59 | 0.71 | 2.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8133 | 1037 | 5 | 0 | 3 | 0 | 0 | logfile |
✘ | 6WLW | 21844 | 2022-12-18 | 2020-04-20 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22145 | 2749 | 35 | 0 | 61 | 0 | 0 | logfile |
✘ | 7D0J | 30536 | 2022-12-19 | 2020-09-10 | 3.42 | 3.77 | — | 3.7 | 0.011 | 1.27 | 0.0 | 0.09 | 18.65 | 0.01 | 1.058 | 17.22 | 0.04 | 9.4 | 90.3 | 0.3 | -2.31 | 0.77 | 0.79 | 2.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 68860 | 5923 | 56 | 0 | 453 | 0 | 0 | logfile |