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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
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✘ | 8Q4H | 18148 | 2023-12-09 | 2023-08-07 | 2.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9694 | 1184 | 8 | 0 | 10 | 14 | 0 | logfile |
✘ | 8HPT | 34943 | 2023-12-08 | 2022-12-13 | 3.39 | 3.64 | 3.38 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 14.89 | 0.01 | 2.212 | 6.51 | 0.40 | 3.4 | 96.6 | 0.0 | 0.29 | 0.72 | 0.81 | 2.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7897 | 1094 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8T1J | 40969 | 2023-12-08 | 2023-06-02 | 2.7 | 2.99 | 2.81 | 3.0 | 0.012 | 1.45 | 0.0 | 0.07 | 12.84 | 0.01 | 2.502 | 0.95 | 0.00 | 2.4 | 97.6 | 0.0 | 0.15 | 0.76 | 0.80 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6973 | 840 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 8HL4 | 34869 | 2023-12-07 | 2022-11-28 | 4.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6RAJ | 4777 | 2023-12-09 | 2019-04-06 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10198 | 1282 | 5 | 0 | 4 | 0 | 0 | logfile |
✘ | 7WU5 | 32820 | 2023-12-08 | 2022-02-05 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6948 | 888 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7QEV | 13942 | 2023-12-07 | 2021-12-03 | 2.9 | 3.46 | — | 3.1 | 0.009 | 0.86 | 0.0 | 0.05 | 13.68 | 0.00 | 2.164 | 5.92 | 0.00 | 4.3 | 95.7 | 0.0 | -0.15 | 0.79 | 0.86 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3204 | 383 | 6 | 0 | 8 | 8 | 0 | logfile |
✘ | 6Hio | 0226 | 2023-12-11 | 2018-08-30 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16085 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 7X76 | 33033 | 2023-12-09 | 2022-03-09 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64334 | 3793 | 18 | 168 | 15 | 0 | 31436 | logfile |
✘ | 6RKo | 4908 | 2023-12-08 | 2019-04-30 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7289 | 875 | 8 | 0 | 9 | 31 | 0 | logfile |
✘ | 5W7G | 8780 | 2023-12-07 | 2017-06-19 | 4.5 | 4.20 | — | 4.2 | 0.015 | 1.17 | 0.0 | 0.07 | 16.66 | 0.01 | 2.165 | 7.63 | 0.45 | 1.2 | 98.8 | 0.0 | -0.31 | 0.50 | 0.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53508 | 5397 | 44 | 504 | 0 | 0 | 0 | logfile |
✘ | 7D5i | 30582 | 2023-12-08 | 2020-09-26 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6232 | 793 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 7E0K | 30935 | 2023-12-08 | 2021-01-28 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8044 | 677 | 6 | 0 | 58 | 0 | 0 | logfile |
✘ | 6K7M | 9941 | 2023-12-09 | 2019-06-07 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10591 | 1307 | 5 | 0 | 9 | 0 | 0 | logfile |
✘ | 5XNo | 6744 | 2023-12-09 | 2017-05-23 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✘ | 7DBH | 30631 | 2023-12-09 | 2020-10-20 | 3.6 | 4.18 | — | 3.4 | 0.007 | 0.74 | 1.0 | 0.05 | 28.57 | 0.00 | 1.451 | 11.99 | 0.17 | 3.2 | 96.8 | 0.0 | 0.54 | 0.91 | 0.85 | 2.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10631 | 697 | 10 | 252 | 0 | 0 | 0 | logfile |
✘ | 6KMW | 0726 | 2023-12-09 | 2019-08-01 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64083 | 5739 | 63 | 0 | 366 | 627 | 0 | logfile |
✘ | 6KMX | 0727 | 2023-12-09 | 2019-08-01 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65112 | 5919 | 72 | 0 | 363 | 636 | 0 | logfile |
✘ | 6HUo | 0282 | 2023-12-10 | 2018-10-09 | 3.26 | 3.38 | 3.25 | 3.3 | 0.006 | 0.89 | 0.0 | 0.06 | 9.67 | 0.01 | 2.257 | 4.69 | 0.00 | 3.8 | 96.2 | 0.0 | -4.15 | 0.74 | 0.83 | 4.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15227 | 1808 | 16 | 0 | 35 | 0 | 0 | logfile |
✘ | 7VG3 | 31964 | 2023-12-08 | 2021-09-14 | 3.73 | 3.86 | — | 3.8 | 0.006 | 1.15 | 2.0 | 0.06 | 15.38 | 0.01 | 1.935 | 7.51 | 5.13 | 10.8 | 88.7 | 0.6 | -4.51 | 0.80 | 0.84 | 3.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8118 | 860 | 4 | 62 | 3 | 0 | 0 | logfile |