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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6W17 | 21502 | 2024-03-20 | 2020-03-03 | 3.9 | 3.99 | 3.93 | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 13.38 | 0.00 | 1.894 | 5.87 | 0.00 | 4.9 | 95.1 | 0.0 | -3.15 | 0.87 | 0.82 | 1.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27396 | 3518 | 23 | 0 | 12 | 0 | 0 | logfile |
✘ | 6WTi | 21897 | 2024-03-14 | 2020-05-02 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9980 | 1207 | 8 | 0 | 14 | 0 | 0 | logfile |
✘ | 6R0Y | 4700 | 2024-03-24 | 2019-03-13 | 3.9 | 3.89 | — | 3.9 | 0.009 | 1.08 | 0.0 | 0.06 | 10.27 | 0.01 | 2.169 | 5.26 | 0.31 | 7.3 | 92.7 | 0.0 | -4.22 | 0.84 | 0.84 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40169 | 5845 | 28 | 0 | 3 | 0 | 0 | logfile |
✘ | 6MN7 | 9166 | 2024-03-18 | 2018-10-01 | 4.8 | 5.01 | — | 5.0 | 0.016 | 2.23 | 12.0 | 0.12 | 17.86 | 0.02 | 1.395 | 35.74 | 0.57 | 8.6 | 89.4 | 2.0 | -2.34 | 0.50 | 0.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21447 | 2418 | 66 | 0 | 192 | 0 | 0 | logfile |
✘ | 6WB8 | 21586 | 2024-03-16 | 2020-03-26 | 3.24 | 3.55 | — | 3.5 | 0.011 | 0.91 | 0.0 | 0.05 | 8.89 | 0.00 | 2.124 | 16.94 | 0.00 | 5.9 | 93.9 | 0.2 | -3.70 | 0.73 | 0.79 | 3.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14888 | 1852 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6XKT | 22224 | 2024-03-15 | 2020-06-27 | 3.75 | 3.88 | — | 3.8 | 0.009 | 0.99 | 1.0 | 0.07 | 13.78 | 0.01 | 1.732 | 26.25 | 0.08 | 16.5 | 83.1 | 0.4 | -4.20 | 0.75 | 0.79 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13079 | 1678 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 8F6T | 28890 | 2024-03-10 | 2022-11-17 | 2.76 | 3.61 | 2.91 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 12.87 | 0.00 | 2.119 | 4.79 | 0.00 | 5.4 | 94.6 | 0.0 | 0.80 | 0.65 | 0.86 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3473 | 428 | 1 | 0 | 4 | 0 | 0 | logfile |
✘ | 6R0Z | 4702 | 2024-03-24 | 2019-03-13 | 3.8 | 3.83 | — | 3.8 | 0.007 | 0.97 | 1.0 | 0.06 | 9.78 | 0.01 | 2.152 | 4.34 | 0.19 | 6.2 | 93.8 | 0.0 | -3.88 | 0.85 | 0.85 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40184 | 5847 | 27 | 0 | 3 | 0 | 0 | logfile |
✘ | 6XKU | 22225 | 2024-03-15 | 2020-06-27 | 4.2 | 4.32 | — | 4.2 | 0.009 | 1.00 | 1.0 | 0.07 | 13.80 | 0.01 | 1.987 | 25.66 | 0.16 | 16.5 | 83.2 | 0.4 | -4.29 | 0.75 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13079 | 1678 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 7o37 | 12702 | 2024-03-25 | 2021-04-01 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48610 | 5970 | 52 | 0 | 43 | 0 | 0 | logfile |
✘ | 8EAo | 27792 | 2024-03-16 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 5UK0 | 8562 | 2024-03-22 | 2017-01-19 | 4.8 | 5.42 | — | 5.2 | 0.010 | 1.26 | 0.0 | 0.06 | 12.08 | 0.01 | 2.096 | 3.58 | 0.16 | 8.3 | 91.6 | 0.1 | -3.58 | 0.84 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 7o3E | 12705 | 2024-03-24 | 2021-04-01 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44039 | 5417 | 45 | 0 | 34 | 0 | 0 | logfile |
✘ | 5UK1 | 8563 | 2024-03-22 | 2017-01-19 | 4.8 | 7.30 | — | 7.0 | 0.010 | 1.28 | 0.0 | 0.07 | 12.04 | 0.01 | 2.106 | 4.22 | 0.16 | 8.1 | 91.8 | 0.1 | -3.97 | 0.88 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 6V3E | 21034 | 2024-03-25 | 2019-11-25 | 4.4 | 4.86 | — | 3.6 | 0.002 | 0.47 | 0.0 | 0.03 | 22.69 | 0.02 | 2.039 | 11.24 | 0.05 | 2.4 | 97.6 | 0.0 | -1.40 | 0.88 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 50850 | 2311 | 20 | 1528 | 0 | 0 | 0 | logfile |
✘ | 7D3S | 30566 | 2024-03-11 | 2020-09-20 | 2.9 | 2.73 | 2.75 | 2.8 | 0.004 | 0.64 | 0.0 | 0.04 | 13.88 | 0.00 | 2.237 | 10.24 | 0.00 | 4.0 | 96.0 | 0.0 | -2.28 | 0.56 | 0.75 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8338 | 1048 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZZ3 | 15033 | 2024-03-22 | 2022-05-25 | 2.41 | 2.71 | 2.40 | 2.4 | 0.006 | 0.86 | 0.0 | 0.05 | 17.24 | 0.00 | 2.065 | 4.87 | 1.75 | 2.5 | 97.5 | 0.0 | -1.03 | 0.93 | 0.90 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34427 | 4311 | 12 | 0 | 26 | 166 | 0 | logfile |
✘ | 7DBH | 30631 | 2024-03-15 | 2020-10-20 | 3.6 | 4.18 | — | 3.4 | 0.007 | 0.74 | 1.0 | 0.05 | 28.57 | 0.00 | 1.451 | 11.99 | 0.17 | 3.2 | 96.8 | 0.0 | 0.54 | 0.91 | 0.85 | 2.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10631 | 697 | 10 | 252 | 0 | 0 | 0 | logfile |
✘ | 7Y3F | 33593 | 2024-03-24 | 2022-06-10 | 2.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39463 | 3158 | 37 | 0 | 1155 | 26 | 0 | logfile |
✘ | 7P5Y | 13208 | 2024-03-24 | 2021-07-15 | 3.29 | 2.97 | 3.19 | 3.1 | 0.002 | 0.49 | 0.0 | 0.04 | 11.33 | 0.00 | 2.158 | 10.43 | 2.64 | 3.5 | 96.5 | 0.0 | -0.32 | 0.72 | 0.72 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41106 | 5028 | 12 | 0 | 0 | 0 | 0 | logfile |