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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6FBS | 4225 | 2022-12-18 | 2017-12-19 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13421 | 1665 | 5 | 8 | 3 | 0 | 0 | logfile |
✘ | 6S3K | 10092 | 2022-12-18 | 2019-06-25 | 3.7 | 4.09 | 3.85 | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 15.38 | 0.01 | 2.276 | 5.98 | 0.62 | 10.7 | 89.3 | 0.0 | -4.54 | 0.57 | 0.75 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8902 | 1146 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 3JD6 | 6425 | 2022-12-21 | 2016-04-12 | 4.1 | 5.00 | — | 4.6 | 0.026 | 2.70 | 34.0 | 0.12 | 14.71 | 0.02 | 0.000 | 5.64 | 0.00 | 13.3 | 86.1 | 0.6 | -3.14 | 0.59 | 0.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45781 | 2839 | 17 | 0 | 0 | 0 | 22542 | logfile |
✘ | 2XEA | 1730 | 2022-12-19 | 2010-05-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63950 | 7700 | 100 | 150 | 0 | 0 | 0 | logfile |
✘ | 4CE4 | 2490 | 2022-12-19 | 2013-11-08 | 4.9 | 5.03 | — | 5.0 | 0.004 | 0.79 | 0.0 | 0.04 | 14.48 | 0.00 | 1.398 | 13.86 | 2.64 | 5.3 | 94.5 | 0.2 | -2.30 | 0.47 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✘ | 6BAJ | 7074 | 2022-12-18 | 2017-10-13 | 3.2 | 3.67 | — | 3.6 | 0.008 | 1.40 | 0.0 | 0.06 | 15.64 | 0.01 | 2.131 | 6.76 | 1.74 | 6.6 | 93.0 | 0.4 | -4.66 | 0.60 | 0.79 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24318 | 3042 | 7 | 0 | 42 | 1 | 0 | logfile |
✔ | 6MZU | 9307 | 2022-12-18 | 2018-11-05 | 3.4 | 3.56 | — | 3.5 | 0.006 | 0.72 | 0.0 | 0.05 | 8.11 | 0.01 | 2.309 | 6.63 | 0.03 | 2.5 | 97.5 | 0.0 | -4.73 | 0.78 | 0.85 | 4.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32833 | 4523 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Mi8 | 9126 | 2022-12-18 | 2018-09-19 | 4.3 | 4.20 | — | 4.2 | 0.007 | 1.17 | 0.0 | 0.07 | 11.58 | 0.01 | 1.262 | 6.40 | 0.13 | 8.8 | 91.2 | 0.0 | -5.13 | 0.56 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7139 | 911 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 6EF0 | 9042 | 2022-12-18 | 2018-08-15 | 4.43 | 3.84 | — | 4.1 | 0.011 | 1.07 | 0.0 | 0.06 | 12.59 | 0.01 | 2.089 | 8.62 | 0.00 | 16.8 | 83.2 | 0.0 | -5.24 | 0.62 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24748 | 3318 | 20 | 0 | 6 | 0 | 0 | logfile |
✘ | 6HCY | 0199 | 2022-12-18 | 2018-08-17 | 3.1 | 3.48 | 3.04 | 3.4 | 0.015 | 1.26 | 0.0 | 0.06 | 13.94 | 0.01 | 2.017 | 2.66 | 0.79 | 6.2 | 93.8 | 0.0 | -6.30 | 0.67 | 0.89 | 5.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11007 | 1308 | 6 | 0 | 15 | 0 | 0 | logfile |
✘ | 6UiA | 20784 | 2022-12-18 | 2019-09-30 | 4.3 | 4.41 | — | 4.3 | 0.020 | 1.71 | 18.0 | 0.09 | 15.65 | 0.01 | 1.174 | 14.61 | 1.60 | 8.4 | 90.9 | 0.7 | -4.29 | 0.70 | 0.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31720 | 4084 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 6Po1 | 20406 | 2022-12-19 | 2019-07-03 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53244 | 3407 | 20 | 0 | 18 | 0 | 26717 | logfile |
✘ | 5G06 | 3366 | 2022-12-18 | 2016-03-17 | 4.2 | 4.89 | — | 4.7 | 0.036 | 3.53 | 246.0 | 0.21 | 17.03 | 0.03 | 1.189 | 3.07 | 3.01 | 5.9 | 92.3 | 1.9 | -2.39 | 0.66 | 0.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26794 | 3420 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 6G2H | 4343 | 2022-12-19 | 2018-03-23 | 4.6 | 4.69 | — | 4.5 | 0.013 | 1.94 | 46.0 | 0.11 | 13.54 | 0.01 | 1.921 | 14.14 | 2.29 | 8.3 | 91.0 | 0.7 | -3.04 | 0.79 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103896 | 6454 | 6 | 0 | 0 | 0 | 51852 | logfile |
✘ | 5YKG | 6833 | 2022-12-22 | 2017-10-14 | 4.57 | 4.68 | 4.39 | 4.4 | 0.005 | 0.71 | 4.0 | 0.04 | 13.41 | 0.01 | 2.245 | 13.43 | 7.90 | 4.2 | 95.6 | 0.1 | -2.42 | 0.73 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 50868 | 6536 | 16 | 0 | 12 | 0 | 0 | logfile |
✘ | 6iP2 | 9698 | 2022-12-18 | 2018-11-01 | 3.7 | 3.82 | — | 3.8 | 0.008 | 1.38 | 0.0 | 0.06 | 11.73 | 0.01 | 2.237 | 6.67 | 0.26 | 12.2 | 87.7 | 0.1 | -5.47 | 0.70 | 0.77 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24660 | 3120 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6Bo5 | 7119 | 2022-12-18 | 2017-11-18 | 3.6 | 3.71 | — | 3.6 | 0.005 | 1.08 | 0.0 | 0.05 | 12.89 | 0.01 | 2.277 | 11.47 | 1.84 | 9.1 | 90.5 | 0.4 | -5.44 | 0.66 | 0.72 | 1.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17236 | 2228 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6KMX | 0727 | 2022-12-19 | 2019-08-01 | 2.41 | 2.47 | — | 2.4 | 0.025 | 2.34 | 0.0 | 0.08 | 19.68 | 0.03 | 1.209 | 6.49 | 2.13 | 3.1 | 96.8 | 0.1 | -4.21 | 0.75 | 0.87 | 4.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65112 | 5919 | 72 | 0 | 363 | 636 | 0 | logfile |
✘ | 6JP5 | 9866 | 2022-12-18 | 2019-03-25 | 2.9 | 3.03 | — | 3.1 | 0.016 | 1.53 | 4.0 | 0.12 | 14.51 | 0.01 | 1.921 | 28.88 | 6.11 | 7.7 | 91.7 | 0.6 | -3.65 | 0.56 | 0.62 | 2.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22068 | 2694 | 14 | 0 | 39 | 0 | 0 | logfile |
✘ | 6JPB | 9869 | 2022-12-18 | 2019-03-26 | 2.9 | 3.09 | — | 3.1 | 0.015 | 1.47 | 3.0 | 0.12 | 14.12 | 0.01 | 1.739 | 21.21 | 4.38 | 8.5 | 91.1 | 0.4 | -4.25 | 0.61 | 0.77 | 2.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21989 | 2694 | 14 | 0 | 35 | 0 | 0 | logfile |